prot_L-elsbetiae_contig5470.13732.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5470.13732.1
Unique Nameprot_L-elsbetiae_contig5470.13732.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length92
Homology
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: D7G5C0_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C0_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.250e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA 91
            MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA
Sbjct:   23 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA 113          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A835ZED0_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.430e-32
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKM 68
            MKNGEIYRG L EAEDTMN F+T VTMT RDGRVSKLEQVYLRGSHIK ++LPD+LKNAPVFK VQKM
Sbjct:   26 MKNGEIYRGRLMEAEDTMNSFITEVTMTARDGRVSKLEQVYLRGSHIKFIILPDLLKNAPVFKGVQKM 93          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.910e-29
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 70
            ++NGEIYRG L EAEDTMNCF+  VTMT RDGRVSKLEQVY+RGS +KL++LP+VLK++P F  VQ MKK
Sbjct:   25 LRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKK 94          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A6S9H3G1_HETAK (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H3G1_HETAK)

HSP 1 Score: 106 bits (265), Expect = 5.380e-28
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQ 66
            +KNGEIYRG L+EAEDTMNC M+ VT T R+G+VSKLE VY+RGSH+KL++LPD+L+NAPVFK VQ
Sbjct:   25 LKNGEIYRGMLDEAEDTMNCAMSNVTFTARNGKVSKLESVYIRGSHVKLLILPDMLRNAPVFKKVQ 90          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: K3WSP0_GLOUD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSP0_GLOUD)

HSP 1 Score: 105 bits (262), Expect = 1.630e-27
Identity = 46/70 (65.71%), Postives = 61/70 (87.14%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 70
            +KNGEIYRGHL E+ED+MNC ++ V +T RDG+ +KLEQVY+RGSHIKL++LPD+LKN+P+F  VQ +KK
Sbjct:   24 LKNGEIYRGHLEESEDSMNCQLSNVVLTQRDGQKAKLEQVYVRGSHIKLIILPDILKNSPLFSKVQALKK 93          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: T0QL39_SAPDV (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QL39_SAPDV)

HSP 1 Score: 102 bits (253), Expect = 3.690e-26
Identity = 44/70 (62.86%), Postives = 61/70 (87.14%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 70
            +KNGEIY+GHL EAED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK +Q +KK
Sbjct:   24 LKNGEIYKGHLMEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKIQALKK 93          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A1V9ZC26_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC26_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.690e-26
Identity = 45/70 (64.29%), Postives = 61/70 (87.14%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 70
            +KNGEIY+GHL EAED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK
Sbjct:   24 LKNGEIYKGHLLEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALKK 93          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A485LB96_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB96_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.040e-26
Identity = 44/70 (62.86%), Postives = 61/70 (87.14%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 70
            +KNGE+YRGHL E+ED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK
Sbjct:   24 LKNGEVYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKK 93          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A5D6XZW3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZW3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.950e-26
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 70
            +KNGEIYRGHL E+ED+MNC M  V +T RDG+  KLEQVY+RGSHIKLV+LPDVLKN+P+   VQ +KK
Sbjct:   25 LKNGEIYRGHLLESEDSMNCQMRDVVLTQRDGQKRKLEQVYVRGSHIKLVILPDVLKNSPLLAKVQALKK 94          
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Match: A0A3R7A9P8_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A9P8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.320e-25
Identity = 45/70 (64.29%), Postives = 61/70 (87.14%), Query Frame = 0
Query:    1 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 70
            +KNGEIYRGHL E+ED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK
Sbjct:  122 LKNGEIYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYIRGSQVKLFILPDLLQKSPLFKKVQALKK 191          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5470.13732.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C0_ECTSI1.250e-47100.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835ZED0_9STRA3.430e-3283.82Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A7S2S181_9STRA4.910e-2971.43Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhiz... [more]
A0A6S9H3G1_HETAK5.380e-2872.73Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hete... [more]
K3WSP0_GLOUD1.630e-2765.71Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Glob... [more]
T0QL39_SAPDV3.690e-2662.86Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Sapr... [more]
A0A1V9ZC26_9STRA3.690e-2664.29Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Thra... [more]
A0A485LB96_9STRA6.040e-2662.86Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Apha... [more]
A0A5D6XZW3_9STRA6.950e-2668.57Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pyth... [more]
A0A3R7A9P8_9STRA4.320e-2564.29Sm domain-containing protein n=2 Tax=Aphanomyces i... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..52
e-value: 0.0023
score: 27.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..51
e-value: 5.1E-11
score: 42.1
NoneNo IPR availableGENE3D2.30.30.100coord: 1..63
e-value: 2.8E-21
score: 76.8
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 1..87
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..87
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5470contigL-elsbetiae_contig5470:6634..7598 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5470.13732.1mRNA_L-elsbetiae_contig5470.13732.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5470 6073..7664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5470.13732.1 ID=prot_L-elsbetiae_contig5470.13732.1|Name=mRNA_L-elsbetiae_contig5470.13732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLV
VLPDVLKNAPVFKPVQKMKKKDEEAGGGRGGGFKKSKKPKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf