mRNA_L-elsbetiae_contig547.13727.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig547.13727.1
Unique NamemRNA_L-elsbetiae_contig547.13727.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig547.13727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig547contigL-elsbetiae_contig547:1582..6574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size683
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig547.13727.1prot_L-elsbetiae_contig547.13727.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig547 5920..6574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.4289613-UTR-L-elsbetiae_contig547:1581..16851622816573.4289613-UTR-L-elsbetiae_contig547:1581..1685Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig547 1582..1685 +
1691683656.8161776-UTR-L-elsbetiae_contig547:1581..16851691683656.8161776-UTR-L-elsbetiae_contig547:1581..1685Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig547 1582..1685 +
1622816573.4414544-UTR-L-elsbetiae_contig547:5495..56001622816573.4414544-UTR-L-elsbetiae_contig547:5495..5600Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig547 5496..5600 +
1691683656.8270154-UTR-L-elsbetiae_contig547:5495..56001691683656.8270154-UTR-L-elsbetiae_contig547:5495..5600Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig547 5496..5600 +
1622816573.4547546-UTR-L-elsbetiae_contig547:5819..59191622816573.4547546-UTR-L-elsbetiae_contig547:5819..5919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig547 5820..5919 +
1691683656.8393795-UTR-L-elsbetiae_contig547:5819..59191691683656.8393795-UTR-L-elsbetiae_contig547:5819..5919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig547 5820..5919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.468875-CDS-L-elsbetiae_contig547:5919..59401622816573.468875-CDS-L-elsbetiae_contig547:5919..5940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 5920..5940 +
1691683656.8493242-CDS-L-elsbetiae_contig547:5919..59401691683656.8493242-CDS-L-elsbetiae_contig547:5919..5940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 5920..5940 +
1622816573.4804237-CDS-L-elsbetiae_contig547:6223..65741622816573.4804237-CDS-L-elsbetiae_contig547:6223..6574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 6224..6574 +
1691683656.8607213-CDS-L-elsbetiae_contig547:6223..65741691683656.8607213-CDS-L-elsbetiae_contig547:6223..6574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig547 6224..6574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig547.13727.1

>prot_L-elsbetiae_contig547.13727.1 ID=prot_L-elsbetiae_contig547.13727.1|Name=mRNA_L-elsbetiae_contig547.13727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MDAPPRGAPSAAASSNILAGTPLTSISDQGHDGAVSSLAAPSLEGARDGA
REEPPLNARRGGRGSGSVEDGGTCPPTAHEGEGDGTHQGDASSSSSSSLT
PEGSPAVGFCGWQAPDTKYAKKHR
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mRNA from alignment at L-elsbetiae_contig547:1582..6574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig547.13727.1 ID=mRNA_L-elsbetiae_contig547.13727.1|Name=mRNA_L-elsbetiae_contig547.13727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4993bp|location=Sequence derived from alignment at L-elsbetiae_contig547:1582..6574+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGACCCGCCATCAGAACAAGACTGTCCATCGACTGGCCAGCTCTTGTG
GGAATCCGTGGGTTGCAGCAGTTGACGCGCCCAAAGCGACGTAAAGCAAG
CGAGGTGCGTGCAACATATTTGTGTGCGGAGACGAAGTATGTATGTCACA
GGCTGACTTGGCCGACCGAAAAAACGTACCAAACGCAGTAGCGCGACATG
TTGCGGATTGAATCAATTATTGGCCAATCCCCTCCCCACCCTCCCACGGC
TGTACCATCTTGCCCCACCACCGGAGGAATTATGAGTGTTTGCGTTGTTT
TTGTTTTTTGTTTTTGCCCCTGGTCTTGTTTCATGTCATGTGGACGGTAA
ATTCGGCGGGGAGGACTATAGATGTTTGGGCCTGACCGGCGAGACCGGCA
CCGAACACCCTGGCATTGTTAGGGTACCAAGATAGAACCAGGGAGTGTAT
ACCCCTGGTTGGTGATGTTGGCTTTCTCAGTTTTGTTTTTTACCTCGCAT
CGCGTGTAGAGGTGAGCGAGGGGCTCCACACAATTTGTCTTTGATTTTTA
TGGCGTGCTGACCCTTCGGGTCCATTTTTTTCTTATTTTCGTAGATATAC
CTTGTTTTGTTTTTAGGTATAAGTTATCCTGTGACCACGGGAATTGACCG
CATCAAGTGTTGAATTGTACGGACATAGGGAGGTACTGGGTGGAGAGATC
GGAACGGTGTTTCTTGTGAAGAAACAACAACAAACAAACGCTCGTAGACT
TTGCGCATTGCGGTTTGCGGGAGAGCTCTGCAGAGAGAGCGAAAGAGACT
GCTTTGTGAAAAAAACGCCCCCCCCCTCCCCGGGCGAGATTTCCCCTTTG
GCAGTTCTGCCGAACAAGTAATAGGTCCCTCCCTGAACGCGATTTTTCCC
CGCGAACCTCCCGGGGGCGTTGGTTTCAGGAAAACAAAACAGAGGAGGGT
TTTATGCCAGCTTGTGACTTCACTATAATAAAAGCTGATCTCTCTTCCCC
TCGGGTTTCTGGACACGCCAAGCAAGAGGCAGCGAGAGCATGCCGCAAGA
GCACCAGAAATACCAACCACCGTCCCCCCTTCTCTCCCCCACCCCGAAAA
GGCCGACTCAATACACTGATTGCGTCAACCGACAGAACGTCGAAACAGCA
CCGAGAACCTCAAACCACTGGCCGGATAAATACGCAAGTGCGTGTGCATG
TTAGCCTGGATGTGTACCTTCGCTGGTGGTTTCCCTTTTGCATGACACTT
GCAGAGGGATGAGCTAAATTTAGGCATTCGTTTGTTTCAAACGTATAGCT
TTAGCTCTCTCTCACAGTGCAACATCAGCAACTGGGTTTGGTCGGTTGGT
CGTTTTGACGATTTTGTACATAGAAAACGATCCCAGCTTCTGGTGGCTGT
GCATGGTCTGTTGGGATTCGTCCTTGAGTGGCCAAGAATCTTAGCTCCAC
TGCAGAAGCGGGGTATCACCTCTATGGCTGGTTATCGCTCAGTTATCGGT
CGCCTTTTTGCGGTGTGTGTTGTTTGCGTGTTTGTGTTCCACGTTTTGTA
TAGCGGTGTGTGCTGTCTGAGTCACGACGGAAGACCACGTTTGTTTGTGT
TTCCGTTTTGTTTGCTTTGGACAAAGTTTGTTTTGCGGCCCCTGAACAGT
TTCCTGAATTTCCAAAACGCGTGTGGAAGTTCACTACATACATACACTAC
TTACCAGCGTCGGTTATTTCGTCTTCTCTACTTGTGTGATGATACTTAGA
TGAAAGTGTTCTTCGTCTCAACTTCGAGAAACAAGGTTCTCAAAAAAACA
GCGTTTGTTTTTTCAATACCCCCAACCTGCTCTTTGCTTGGACCGTTGCA
GGAGGGATTTCGTCCCCTTGGCCCGGGAGGTCCAAATGCACAGCATACAT
ATCATAACTGGCTCGTGTCTGTTTCCATGCTTTCGCCACGGGCCAGTGTT
TTTCGCTTGTGTGTATAGTCTACTCCTGTATTTGAGTGCAGGCGACCACA
GCTCTTAACAGTCACTTCATAGATTCTACACACAGCGGTGAAAGTTGTTG
ACAGTTAGTGTCGGTACATCATCCATTCATTTCAAGAGGCTTCGAGGTGG
CATTCATCCAACTTCTCCCTTGCTCGCGCTTGTTGGGTACGCCAGGTGTA
CGAAGCTCAAAGTGCGGCCGCATCCCATCGCAAAAACTGTGTTGTGAATT
AGTTCTACGAGCTGGTGTTGTTCTGTCGAGCACATATGCTCACGCCAAGT
TGGATTTCCAACCTGTGCAATCGTCAATTAGCAACTACTGGTAGCTGTAT
GCGCTTGGCATACCATACTACTATACCGCGAGATTTTTTCTGAAACTCGT
GTCAAAGTTCATTTCCTTGCAACTAACATGCTCCTGGATAGAACAGCACC
CCCTTTTCCAACACCACTCGCCTTACCTTGAACCCCCTACTTATTATCCT
CTTCCGCTGTGTAACCCGTATGTTCTCTCAACACTCCTTTAAAGGTGTCG
TTTACTTTTTCGGGTGTCAGTTTCTGTGTAGATGTGTGTATCTATATACA
GCCGAGCGGTTGCTTGGTTTGATTTTTAGGCCGGCCTGCCAGCCTCTACG
CTGGCCCACGCAGAACCCATAGCCACATACATATCATAGAGGGGCGTCGC
GTGCGATTGCCCTAGCCTTTTAGGCCCGTCTATTGTAGACCGCGCAGGCC
CGACAAGTGACTTTTCGCCAGAGAGCGAGGCCCAGAAATTGAATTTTTAT
CATCTTTCAGCATGGATATACCACCACATCTAGATACCCATCAACAGAGA
GGCGCCGCGTGCAGTTGTTCGAGCCTTTGAGCTCCTCCTAGACCACATCA
ACCCCGACCACCGGCTTGTTCAGCACAAGGGCTCCGTCTACCGCTCCAAA
CGTACACCCCTACAGTAGGGCGCTCAGTATTTTCGGCCAGTTACATTGTC
ACACACATGAGCAAGGGTTTAACTAGCACAACAACGCAGCACTAATTTAG
TGGCGCGCTCTCTCCTCCTCTCCCCTATCTCTCTCCCCCTCAAACTCTGT
ATGTAGCCGCTACACAAGACGCTATTAATCTTAGCCGGGGCGGCCGTTAC
GTATGTAAATACTGCAAAATGTTTTGTCAAACCGGGCTCAAATAAATCCG
TGAGCACCTCTCCAATATATCTTGTCTCCTACTCGGTTCACGCAAGCAAG
CTGTGCCTCCCTGCTCCTCGGCTCGACGTACTTACTTCGTTTCCTCATGC
GACGACCCCACTCTTGACCGTTTGTTACTACTAGTGGTCGGTTCCTTTCT
TCTGTCTCATCATCTACTGCTTCGCATTCTCTCTGCTACATACCTTCGTT
TTTGGTTGACTAAAGATCTACATAGTACCCATCATATCGACTTCTACGGG
TTCAAGAATTTGTCCACGGTGTGGAATTATTCAATCGGCGTTTTGTGGAT
TTCGTGCCTTGGTCGGACCTCAACGCCCCGACCGTCAGTACTTTTGTCTC
GTCGTGTACTGTTGCCGAACGCTGAGACTGGTGTCCCCCCAAATGTACCA
GCACCTTCAAATGAAAACTGGAAGCGCCCTGGGCCCAGGGCAATCGACAA
TGCAACGATAAGGGCTTACAGAGAATTTTAACAGAGTACTTTAGATTCCA
ATACTTCTACACCGGAGTATTTTTTGTCAGTTCTTGCTAGTGGTCTACAT
AGGTTTGATGAGGGATTTTGACGTCTCAAGGCATTTTTCCTCTCAAAACT
TGCATACTTTCTGTCCTTTGTGGAAGTACTAAGATCTGTTCGCTTTTATG
CTTCATGAATAGGTAGGTCACCGCCGCAATGGTAGTTTCGGACCATTTTG
TGACACTCGCATCCCTCCCTTCCCCCTCCTCCCACTCCTATCCATCTTGA
TTGAGTAAATCCAGTCGGCTAAAGATTCGGGCCTGCCGACAAAGCACCTG
CGGAGTGATAGGTCAACACAACCATCACTTTGATCCTCCGACCAAGGCAC
AAAGCGAGGGATTCTGCGGGTGAGCCGTTGATGGCCTCACAATAACGTCC
GAGGTTTGCGGGTTGTCCCTTCTTTATGCTGCCGTACTCTTGCCCATGGC
ACCATCGCGCCTTCAATTGTTTCGGATTTGGCTGTCCCTTCTACTCAACA
CTAGGCAATCCTAATTTGTAACTCTGTGTTGGGCGACGCTGATGTGGCCT
CTGGCCGATTTGCTGTTTGCTTTTGCACCCCTTTGTAGTGGACTGAAAAG
CCCAGACAGCGTGGAAGCCAGGAATCAGCTGGTGGACAACCTATTGAGCG
AGAGCACGGCACCTCCAAACAAGCGGAAATGTGGAACGATGGACGCGCCG
CCCAGGGGGGTAAGATCGGTACATACCATTATATACGGCGGCATTGGCCT
ATTGCCTTGAGGTTAAGATGGCTTTGGAAGAGTGCCATCGTGAGCCGTTT
ATAGATACGCAGTGTTTGCACTTCGAAGCCTAGGTGTTCTGGGTTGTGAT
GCTATTGCAACTCCGTATGAAAGTGATGGATGGGGGGGGCAGTTACGAGC
TGTCCTTGATGTTTTTTCAGAAAACAAGTGTCCGCCCTACCGCTAAATAC
CCTTAATCCGCTGATCGTCTTGTTCTCCCGTGTTTTGGACAGGCGCCCTC
TGCTGCGGCCTCGAGCAACATACTGGCCGGCACACCTCTCACTTCGATCA
GCGACCAGGGCCACGACGGGGCAGTCTCAAGCCTGGCTGCGCCTTCGCTG
GAGGGGGCGCGGGATGGTGCGCGGGAGGAGCCCCCACTCAACGCTCGTCG
CGGCGGTCGCGGCAGCGGCTCCGTCGAGGATGGTGGTACATGCCCCCCGA
CCGCCCATGAGGGGGAGGGGGACGGTACGCACCAAGGCGATGCTAGTTCT
AGCAGCAGCAGCAGCTTGACACCTGAGGGCTCTCCGGCGGTCGGCTTTTG
TGGTTGGCAAGCTCCGGATACCAAGTATGCGAAAAAACACCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig547:1582..6574+

>mRNA_L-elsbetiae_contig547.13727.1 ID=mRNA_L-elsbetiae_contig547.13727.1|Name=mRNA_L-elsbetiae_contig547.13727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig547:1582..6574+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGCGCCGCCCAGGGGGATGGACGCGCCGCCCAGGGGGGCGCCCTC
TGCTGCGGCCTCGAGCAACATACTGGCCGGCACACCTCTCACTTCGATCA
GCGACCAGGGCCACGACGGGGCAGTCTCAAGCCTGGCTGCGCCTTCGCTG
GAGGGGGCGCGGGATGGTGCGCGGGAGGAGCCCCCACTCAACGCTCGTCG
CGGCGGTCGCGGCAGCGGCTCCGTCGAGGATGGTGGTACATGCCCCCCGA
CCGCCCATGAGGGGGAGGGGGACGGTACGCACCAAGGCGATGCTAGTTCT
AGCAGCAGCAGCAGCTTGACACCTGAGGGCTCTCCGGCGGTCGGCTTTTG
TGGTTGGCAAGCTCCGGATACCAAGTATGCGAAAAAACACCGGGCGCCCT
CTGCTGCGGCCTCGAGCAACATACTGGCCGGCACACCTCTCACTTCGATC
AGCGACCAGGGCCACGACGGGGCAGTCTCAAGCCTGGCTGCGCCTTCGCT
GGAGGGGGCGCGGGATGGTGCGCGGGAGGAGCCCCCACTCAACGCTCGTC
GCGGCGGTCGCGGCAGCGGCTCCGTCGAGGATGGTGGTACATGCCCCCCG
ACCGCCCATGAGGGGGAGGGGGACGGTACGCACCAAGGCGATGCTAGTTC
TAGCAGCAGCAGCAGCTTGACACCTGAGGGCTCTCCGGCGGTCGGCTTTT
GTGGTTGGCAAGCTCCGGATACCAAGTATGCGAAAAAACACCGG
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