prot_L-elsbetiae_contig5467.13725.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5467.13725.1
Unique Nameprot_L-elsbetiae_contig5467.13725.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1116
Homology
BLAST of mRNA_L-elsbetiae_contig5467.13725.1 vs. uniprot
Match: D8LNR4_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR4_ECTSI)

HSP 1 Score: 977 bits (2525), Expect = 0.000e+0
Identity = 665/1176 (56.55%), Postives = 746/1176 (63.44%), Query Frame = 0
Query:    1 MKPSISIDLPGWCTLKQRDNDVGSNNEPTPEKTPGPSDFQGLDDRSSSSARHGNDN--AGESDDDDG--------AIARLFSIGGLKRRTGSDSHQQTSGRDSGNRNSSG----GRARRGSAGFELQAEAFLDWPCVRCTFINACTEDACGGCGGGNRKRERLLRERREEVERLGRLQSARECRDRSLKEEAFKDLLEDSGDSXXXXXXXANSHTPATPAGHTSPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--RHPXXXXXXXXSSSRSQACVIGTLPPDTLLQCAEYLGDARSLCRVREVCLGWVVTLDDREAGQRLWRPLFYRLRACGSIHEATDATGQQHRQLKVYDLGTAAXXXXXXXXXXNSRGAALALAAAPGKSPAAGGVSTPMSPLXXXXXXXXXXXXXXXXXXXXXAAGKSPP-----GLAPAARPSSACMVCGLIQREAYSGRECEMCASSLVLVQSRESPAAPATPRLAYTRVNLSGAGVAPAPSGPPALVGHTQDSSRGGCAADENGYTAVSE-----RAG----AGA-AXXXXXXXXXXXXXXXXXXXAHGREERELGEGARSIDWHFLVKRLAEEKRIAGAWGSLHHGWVWLQRALQNMLRRRRGAEPLGATPSRAVSGSSSASPSQAEPPAFSGDSCSVGVGTGGSSRRVGAXXXXXXXXXXXASIP---AAGRPGGDGELDPTIARLVRKLASKKWVLLYDSLKATFTLQAEGIAREVVFEAMAAAANAAARDALEEGPG---AQGRRGAAAAELEGLRGCVAAWEAYKDWCEEVDMYCELLNEQISAERYRTAGAGCGRGDNTPYIRDTALLSFRHSFALNVQICTILRLSISKGMPTAATAAPDATESPLES--------GSRRKISRHEAAGATVGDAEELFTDLELMEDSRAIDFSVRKFSGSNASCGRSSGXXXXXAVDRAGGKGASGTSAXXXXXXXXXXXXPANSAAFIXXXXXXXXXSSRPGNYYDWFLSKLEGKEMGIIRGDIDARGKSV-KSGGSGXXXXXXXXXXXXXXXXSGG----LQTA-TLPELLEKVHDMVEELDVPDDGLSKDRHTQGAMRRLLFLPIKRWQAAV---------AEVNNAEEDPRNLLLAGLSPAPGEGGFHRLRGGAAGRR-KGTPPMSSLKKDAGKSWEHLSTLFG 1115
            MKPSISIDLPGWCTL++   +V S+ +              +DD + S   H  D   +GE+  +          AIARLFS+GGLKR+  SDS QQT   D G   SSG    GRA RG+A  +L+AEA+ DWPCVRCTFINA TEDACGGCGG N+KR+RLLRERREE E+L RLQ+AR CRDRSLKEEA KD+LEDS DS        ++     PA HT+                                  +HP               CVI  LPPD LLQCAEYLGDARSLCRVREV LGW++ LDDREAG RLWRPLFYRLRA GSIH+ATDATGQQ+RQLKVYDLGT             +RG++   A+A G    AG VSTP SP                      AAGK  P     G A AA  +S+C+VCGLIQR+ YSG++CEMCAS+LVLV+ RESPA   TPRLAYTRVNLSG G + +    P  +   Q     GC     G +   +     R G    AGA A                   A G EE E G GARS+DWHFLVKRLAEEKRIA  WGSL HGWVWLQR LQNMLRRRRG E LG  PS   +  +   P Q E  A S  S   GVGT G +   GA  XXXXXXXXX       AAGR   DGE DP IARLVRKL++KKWV+LYDSLKATFTLQAEGIARE+V  A +AAA AAAR+  ++G G   A GRR  A+A+LEGLRGCVAAWEAYKDWCEEVDMYCELLNE ISAERYRTAGAGCGRGDNTPYIRDTAL+SFRHSFALNVQ+C +LR +ISKGMPTA T +   T  PLE+        G+++   R + A +  GDA+ELFTDLELMEDSRAIDFSVR FSG         G XXXX     G +GAS  S   XXXXXXXX   A SA+           SSRPGNYYDWFLSKLEGKE GIIRGDIDARGKSV +S   G                +GG    LQ A T  ELLE V DMVEELDVPDD LSK+RHTQGAMRRLL LP+KRWQA           A  +NAE DPRNLL+AGLSPAPG+ GFHRLRGGAAGRR KG PPMSSL KDAGKSWEHLSTLFG
Sbjct:    1 MKPSISIDLPGWCTLRRDPKEVESDEQL----------LALMDDVAGSGGTHDLDGNASGENSGNXXXXXXXXXXAIARLFSVGGLKRKRSSDSRQQTG--DGGETRSSGSGSAGRAGRGTARSDLEAEAYADWPCVRCTFINAYTEDACGGCGGANKKRDRLLRERREEAEKLSRLQTARRCRDRSLKEEALKDVLEDSSDSENDD----HNRRGEGPASHTTKPVEDETPVSTASASETTSAAPADDNTGRTKTLQQHP----------GTGGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQNRQLKVYDLGTRPP----------NRGSS---ASAFGNGLTAG-VSTP-SP--------SQKTRLSSGGPPALAAGKGTPWSSGSGSAAAAVVASSCVVCGLIQRDGYSGKDCEMCASALVLVRGRESPA---TPRLAYTRVNLSGGGGSCSSFSSPTTMRWQQHP---GCLVTGAGSSRSPDLRQKGRVGGITPAGATADGAREAERSIGSCNSSGGGAQGLEE-EFGGGARSVDWHFLVKRLAEEKRIANGWGSLQHGWVWLQRELQNMLRRRRGHEQLGPAPSLTAAVPTHPPP-QVELAALSSAS---GVGTRGGASHPGAQQXXXXXXXXXXXXXTPTAAGRAAADGEPDPRIARLVRKLSTKKWVVLYDSLKATFTLQAEGIAREIVLAAASAAAVAAARE--DQGKGIVDACGRRPGASADLEGLRGCVAAWEAYKDWCEEVDMYCELLNEHISAERYRTAGAGCGRGDNTPYIRDTALISFRHSFALNVQVCAMLRTAISKGMPTACTDSFSVTGPPLEAARYEPGRGGAKQDNPRSDTAKSAAGDADELFTDLELMEDSRAIDFSVRSFSGP--------GGXXXXXXXXXGSRGASTISGACXXXXXXXXALRAASAS------RSSVGSSRPGNYYDWFLSKLEGKEAGIIRGDIDARGKSVVRSSPPGEGSGA-----------AGGAGCALQAAATQAELLEAVGDMVEELDVPDDALSKERHTQGAMRRLLLLPVKRWQAXXXXXXXXXXXARNDNAEGDPRNLLMAGLSPAPGKEGFHRLRGGAAGRRRKGAPPMSSLGKDAGKSWEHLSTLFG 1089          
BLAST of mRNA_L-elsbetiae_contig5467.13725.1 vs. uniprot
Match: A0A835YZ22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ22_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.170e-29
Identity = 121/404 (29.95%), Postives = 162/404 (40.10%), Query Frame = 0
Query:  742 LRGCVAAWEAYKDWCEEVDMYCELLNEQISAERYRTAGAGCGRGDNTPYIRDTALLSFRHSFALNVQICTILRLSISKGMPTAATAAPDATESPLESGSRRKISRHEAA-------------GATVGDA------EELFTDLELMEDSRAIDFSVRKFSGSNASCGRSSGXXXXXAVDRAGGKGASGTSAXXXXXXXXXXXXPANSAAFIXXXXXXXXXSSRPGNYYDWFLSKLEGKEMGIIRGDIDARGKSVKSGGSGXXXXXXXXXXXXXXXXSGGLQTA---TLPE----LLEKVHDMVEELDVPDDGLSKDRHTQGAMRRLLFLPIKRWQAAVAEV---NNAEEDPRNLLLAGLSPAPGEGGFHR--LRGGAAGRRKGTPPMSSLKKDAGKSWEHLSTLF 1114
            LRG + AW+AY+DWCEEVD            ER              P+IRD ALL+FR++F +NVQ+C  +                           RR   R  A              GA  GDA        LFTDLEL+ED RA++FSV+    S  S G   G            K ++ T+                                   +YYDW L ++EG+   I+RG +DARG                         +GG++ A     PE    LL ++   VEELDVPDD LS DRHTQG+MRR + LP+ RW+AA+ E     N  ++P  LL+  +      GG  R                +     +AG SW+ LS +F
Sbjct:    7 LRGVLRAWDAYRDWCEEVD------------ER--------------PFIRDAALLAFRNNFVMNVQVCAAVSAVAQHAAAXXXXXXXXXXXXXXXXXXRRMGGRKRACSASDGGSGDMGVGGAAAGDAGTNNEDSMLFTDLELVEDCRALNFSVQH---SRRSTGSERGL-----------KTSTSTA------------------------------ERHHRHYYDWILERVEGRAEDILRGTVDARG------------------------IAGGVKLALSTAAPESRQQLLSRLLSAVEELDVPDDDLSGDRHTQGSMRRAMLLPLLRWRAAMDECAANRNDNDEPSALLMQDI------GGKSRGXXXXXXXXXXXXXXXVRGCVGNAGASWKQLSNVF 310          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5467.13725.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNR4_ECTSI0.000e+056.55RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
A0A835YZ22_9STRA3.170e-2929.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 146..166
NoneNo IPR availableGENE3D1.20.1280.50coord: 252..339
e-value: 5.8E-5
score: 25.0
NoneNo IPR availablePANTHERPTHR23202WASP INTERACTING PROTEIN-RELATEDcoord: 52..535
coord: 598..1064
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 120..139
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 248..315

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5467contigL-elsbetiae_contig5467:3237..11768 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5467.13725.1mRNA_L-elsbetiae_contig5467.13725.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5467 2432..11871 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5467.13725.1 ID=prot_L-elsbetiae_contig5467.13725.1|Name=mRNA_L-elsbetiae_contig5467.13725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1116bp
MKPSISIDLPGWCTLKQRDNDVGSNNEPTPEKTPGPSDFQGLDDRSSSSA
RHGNDNAGESDDDDGAIARLFSIGGLKRRTGSDSHQQTSGRDSGNRNSSG
GRARRGSAGFELQAEAFLDWPCVRCTFINACTEDACGGCGGGNRKRERLL
RERREEVERLGRLQSARECRDRSLKEEAFKDLLEDSGDSDDDDGGGANSH
TPATPAGHTSPTAAAAAAVAAAAAAATPSADSLNSSSSASSGRHPHPDPD
PERSSSRSQACVIGTLPPDTLLQCAEYLGDARSLCRVREVCLGWVVTLDD
REAGQRLWRPLFYRLRACGSIHEATDATGQQHRQLKVYDLGTAAAAAAAA
TPPSNSRGAALALAAAPGKSPAAGGVSTPMSPLRPRPAPPAPPGGAGGAS
SSSSAAGKSPPGLAPAARPSSACMVCGLIQREAYSGRECEMCASSLVLVQ
SRESPAAPATPRLAYTRVNLSGAGVAPAPSGPPALVGHTQDSSRGGCAAD
ENGYTAVSERAGAGAAATAAAVAARGGAAGGSGGGAHGREERELGEGARS
IDWHFLVKRLAEEKRIAGAWGSLHHGWVWLQRALQNMLRRRRGAEPLGAT
PSRAVSGSSSASPSQAEPPAFSGDSCSVGVGTGGSSRRVGAQQQQQQQQQ
QQASIPAAGRPGGDGELDPTIARLVRKLASKKWVLLYDSLKATFTLQAEG
IAREVVFEAMAAAANAAARDALEEGPGAQGRRGAAAAELEGLRGCVAAWE
AYKDWCEEVDMYCELLNEQISAERYRTAGAGCGRGDNTPYIRDTALLSFR
HSFALNVQICTILRLSISKGMPTAATAAPDATESPLESGSRRKISRHEAA
GATVGDAEELFTDLELMEDSRAIDFSVRKFSGSNASCGRSSGGGGGGAVD
RAGGKGASGTSARGSGGASKGSRAPANSAAFIRRSPGGSSGSSRPGNYYD
WFLSKLEGKEMGIIRGDIDARGKSVKSGGSGAGGGAAGAAGGGGGDDSGG
LQTATLPELLEKVHDMVEELDVPDDGLSKDRHTQGAMRRLLFLPIKRWQA
AVAEVNNAEEDPRNLLLAGLSPAPGEGGFHRLRGGAAGRRKGTPPMSSLK
KDAGKSWEHLSTLFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036047F-box-like_dom_sf