mRNA_L-elsbetiae_contig5460.13719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5460.13719.1
Unique NamemRNA_L-elsbetiae_contig5460.13719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5460.13719.1 vs. uniprot
Match: D7G2I3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I3_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 2.360e-98
Identity = 145/156 (92.95%), Postives = 154/156 (98.72%), Query Frame = 1
Query:    1 TMDRSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKDSVTSRAMRRVKRPVHQKWTEALDWKKRTCLLTGESLSLFSDPKDTEPSQIVYLRGANAEPELGQAFKESAFRVETNKWKKGDELVDGTERRTFTFLAESKDEKELWLYQIRCGTKTCS 468
            T+D+SQKQKAGTLSVMKYKVTMSQAATNARESTRRRK+SVTSRAM+RVKRPV QKWTEALDWKKR+CLLTGESLSLFSDPKDTEPSQIVYL+GA AEPELGQAFK+SAFRVETNKWKKGDE+VDGTERRTFTFLAESKD+KELWLYQIRCGTKTCS
Sbjct:   90 TIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIRCGTKTCS 245          
BLAST of mRNA_L-elsbetiae_contig5460.13719.1 vs. uniprot
Match: A0A6H5JJ45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ45_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 9.880e-82
Identity = 132/149 (88.59%), Postives = 143/149 (95.97%), Query Frame = 1
Query:    1 TMDRSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKDSVTSRAMRRVKRPVHQKWTEALDWKKRTCLLTGESLSLFSDPKDTEPSQIVYLRGANAEPELGQAFKESAFRVETNKWKKGDELVDGTERRTFTFLAESKDEKELWLYQIR 447
            T+D+S K K GTLSVMK+KVTMSQAATNARESTRRRK+SVTSRAMR+VKRPV QKWTEA+DWKKR+C+LTGESLSLFSDPKDTEPSQIVYL GA AEPELGQAFKESAFRVETNKWKKGD+LVDGTERRTFTFLAESKD++ELWLYQIR
Sbjct:  392 TIDKSHKHKEGTLSVMKHKVTMSQAATNARESTRRRKNSVTSRAMRKVKRPVQQKWTEAVDWKKRSCILTGESLSLFSDPKDTEPSQIVYLTGATAEPELGQAFKESAFRVETNKWKKGDDLVDGTERRTFTFLAESKDDRELWLYQIR 540          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5460.13719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I3_ECTSI2.360e-9892.95PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JJ45_9PHAE9.880e-8288.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5460contigL-elsbetiae_contig5460:113..5934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-12_001630.1
Exons4
Model size471
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5460.13719.1prot_L-elsbetiae_contig5460.13719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5460 116..5934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.3780797-UTR-L-elsbetiae_contig5460:112..1151622816572.3780797-UTR-L-elsbetiae_contig5460:112..115Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5460 113..115 +
1691683656.04969-UTR-L-elsbetiae_contig5460:112..1151691683656.04969-UTR-L-elsbetiae_contig5460:112..115Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5460 113..115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.38856-CDS-L-elsbetiae_contig5460:115..1841622816572.38856-CDS-L-elsbetiae_contig5460:115..184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5460 116..184 +
1691683656.062606-CDS-L-elsbetiae_contig5460:115..1841691683656.062606-CDS-L-elsbetiae_contig5460:115..184Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5460 116..184 +
1622816572.3983982-CDS-L-elsbetiae_contig5460:1229..14631622816572.3983982-CDS-L-elsbetiae_contig5460:1229..1463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5460 1230..1463 +
1691683656.072152-CDS-L-elsbetiae_contig5460:1229..14631691683656.072152-CDS-L-elsbetiae_contig5460:1229..1463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5460 1230..1463 +
1622816572.4124267-CDS-L-elsbetiae_contig5460:2265..24051622816572.4124267-CDS-L-elsbetiae_contig5460:2265..2405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5460 2266..2405 +
1691683656.0811536-CDS-L-elsbetiae_contig5460:2265..24051691683656.0811536-CDS-L-elsbetiae_contig5460:2265..2405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5460 2266..2405 +
1622816572.4249406-CDS-L-elsbetiae_contig5460:5909..59341622816572.4249406-CDS-L-elsbetiae_contig5460:5909..5934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5460 5910..5934 +
1691683656.0900562-CDS-L-elsbetiae_contig5460:5909..59341691683656.0900562-CDS-L-elsbetiae_contig5460:5909..5934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5460 5910..5934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5460.13719.1

>prot_L-elsbetiae_contig5460.13719.1 ID=prot_L-elsbetiae_contig5460.13719.1|Name=mRNA_L-elsbetiae_contig5460.13719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MDRSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKDSVTSRAMRRVKRP
VHQKWTEALDWKKRTCLLTGESLSLFSDPKDTEPSQIVYLRGANAEPELG
QAFKESAFRVETNKWKKGDELVDGTERRTFTFLAESKDEKELWLYQIRCG
TKTCS*
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mRNA from alignment at L-elsbetiae_contig5460:113..5934+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5460.13719.1 ID=mRNA_L-elsbetiae_contig5460.13719.1|Name=mRNA_L-elsbetiae_contig5460.13719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5822bp|location=Sequence derived from alignment at L-elsbetiae_contig5460:113..5934+ (Laminarionema elsbetiae ELsaHSoW15)
ACCATGGACAGATCCCAAAAGCAAAAAGCGGGCACGCTCTCGGTGATGAA GTACAAGGTCACCATGTCACAGGTGAAAGAAGAGTGACCGGGTGTGTTGG GTGTGTTGTCTTTATGCGTATGCGTATGCGCACGCGCACGCGTGTGTGTG TGTGTGTGTGTTGGGTGTTTTTTTTCTAACGTTTTTATGTTTTTATCGGT CTTGGTGATATTGTCCCCTGCAGAGTGGTTTTGTTACTTCTCGTGCGTGG TTTTTTCAACAGCGAGATCTCGATCGTTTGCTCGCAGCCTCCGCCCAAGC GCGGAGGACTTCGGGGAGCATGTCAGTGCGGCCAACTCCTGCCAAGCACG CGACGTGATCAGTTATACTGTTGCAGCCATGGCAGATATGTATGTAGACG GCTTGTGTATATTTAAGCGTCAAGCACTGGCATGTAAGACAAGAACCGCT CTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGCTGACACACACCGGAGTA GGAGGCATATTTTGTGTAGCTAATCAGGAGAAACTCTTCAGTGGTGTGTG TGTGTGCGTGTGTGTGTGCACTGCACTCTGTGCCCTCGCTTACCGCGAAT CTCTCCCCTGTCGAAAAGTCTCCTGCTGCGGAGGTAGTATATATTTGCCA CACACCCTCAACTGGTGGCTGGCTCCCGACAGAGTAACGGAATCGTTTTT TGTTTTGCGTTTTTTGCGTTTTTTTTGCCCCCGCTTACGCTTACAGTATG TATGTACAGCGTATTCTCTTCCGGTCAACCGCCTGGTGCGGTCGATACCG ACCAAGTACCCGCTCTACAAATCTAACAGGCGTTATTCTCGTCGGTCGAC CGGCTGCGCGGTCGGTGCAAAATAGATCCGATAGACTGTTTCAAGAGAAC ACGCACGATGTACACAAGTATCGACTTTTTATCCACCCATATTGGTACGT GCCTCAACACATGCGCGCGGTCGATGCTACATAGATGGACTGTTTTAAGA GAACACGCACGATGTATTTGTGTCGATTGATTTTTTTACATATATCGACT TTTTCTCCACCCATATTCGTACATGCATACGTTCCTCTACTAAATACATG CGTGTGCCGTGGGGCAGGCGGCTACGAACGCCCGCGAGTCGACCAGGCGG CGCAAGGACTCGGTCACGTCGAGGGCCATGCGCAGGGTCAAGCGGCCCGT GCACCAGAAGTGGACGGAGGCGCTGGACTGGAAGAAGCGGACGTGCCTGC TCACGGGGGAGAGCCTCTCGCTCTTCAGCGACCCCAAGGACACGGAGCCC AGCCAGATCGTGTACCTCAGGGGCGCCAACGCGGAGCCCGAGCTTGGGCA GGTCGGACCAGATTGCTGTAATCTTATATGTTCGCCCTTGTACCATAATC ATGCGGGTTATCGCACCCCCGTGTAAGCGTTTTTCTATAGCGTATTTGTC GGGGGCTTTCCGGAGAGGGATCAAATAGCTTTCCGGAGAGGGCATATTGA TCCCTCTCCGGAAAGCCCCCGACAAATACGCTATAGGCTTTCCGGAGAGG GCACTAACTGATACCTCTCCGGAAAGCCCCCGACAAATACGCTATAGAAA AACGCTAACACGGGGGTGCGATAACACGCATGATTACGGTATCCAGATGC ATACGTAGTGCATACACACACGGAGTTCATGTGTACCTCCATCTACTGTG TTGTTTATTCTTATTTTTATTTTATTTTCGTGGATGTGAAAATACATGCG TCGCTGGGGTCTTTTTTTGAGGCGCTTGTTAGGCCTCGAAGCGAGCCTGG CAGACAAGAACGTTGCTGGGGGGGGGGGCACAACATCCCAACATCGGGTT GTCCTCCATATGTTCATCGCAGATGAAACACACGAAGGCTGAACACATCC GCTCGCGGCTTTACGGTTCAAGCACCCACACCTCCAACACTCTCGCTCGC TGCAAGAAACTACGTATGTACATACATGCTTCATACAATATGTATCTTTC CGTAATTTGTATGTTTTTTTTTTCGAACCATCAACCATTGTACGGCGTCA ACACACCTCTTACGCATGCACCCGTTGTATGCGTTGTTGGTGTTGTTATT GTGTGTGTGTGTGGGGGGGGGGGCATCCATCTTGGCTTTCTCGCTTATCT CAGGCTTTCAAGGAGTCCGCCTTCCGGGTGGAGACCAACAAGTGGAAGAA GGGCGACGAGCTAGTTGACGGGACTGAGCGCCGCACCTTCACCTTCTTAG CCGAGAGCAAGGACGAGAAGGAGCTTTGGCTCTACCAGATCAGGTTGGGG AGATGTTTTGCTGGTTCGCTGCTGCCTACGTCGGGGTATTTACAAAAGTA AAAGGCTTTGCGCGGCCACCGAGCTCGACGCTTCTTTTTGTGGCTGATGC CTGCGCTGGGCGGTGTTCGAAGTCTCGGGAGTTTCGGTTCGGTTCGGTTC GGTTTCAGCCCCACGAGGCATGTGTCTCGAGCTAGCTAGCTATCTGGCGG ATCGGGTTGGTTAGACCAGAGTAGATCGGATGAGAGGACAATAACTCGTG GGCGACACAGAACAACTCGTCGGCGTGGTGTCTTGTCTGTCGCATGGTGG TATTTTACGATGTCGTCTCGCTGCTGCACTCGACGGCCACACAGCAACCC GGGCTTGTGGTTTAGGCTTGCGTCAACTAGACATGTACATACATACTCCA TGCGTACAAGCGAAACCTCGCGCAGCCGCCTGAGAGGTGATGCTTCATGG TAAGACAGGTGTGCGTACGCACGCACGCACATGGTGCGACTCCGACTCCG CCCCCTGGGCGCCCCCTCCAGTGTTTCGTAAGACGACTGCGCGCGTGAAT CAATCATCCCACCCCGCCCTCTAACGTATATAGTCTCCGCTGCCGTGACG AATGTGCGCGTGCGTCGTCGTTGCACGACCGCGCCTCTCAGGCACTGCAT CGAGGTGCTCAAGGTGCTCAATGACAAGGCAGGGCCAAGCATGAACAGGT GTGTACCGTAGGTGCCACAAGATACCACACCCCCTGGACAGATTTTCAAA GCTCGATTCCTCCCCCGCAAGAAGAGTGCCAGTGCCAAAAAGGGTGGCGT TGGAAATATCTAGTCAAGGACTGTCCGAAAATTTGTCGTTTGGTGCTGGC AACTTCTTCGTTTCGGAGTACTGGAGCTCTAAAATTCAGTCCAGGGGGTG TGGTATCTTGTGTCACCTACGGTGGTTTGTTGTTGTTGTTGTTTTTGTTT CTCGCGTTGTTTCGTACATCTGAAACTGCTATGGGTGGGTGGATGGTGGG AAGGAAATAGGGCTTGGGGGGTATGTAGCGACGCCGGCAGCGCTGGTGCC CCTGTCTTCATGGCGCGCGCGCGAGCGCTGGAATCATGATCGCGCGCTGT GTTACGTAGTGCCGCCAGCACGACAGAGGGGGTTGCTCTTTGCATGTGTG CTAACAGAGTAGCGTCGTTCATGGCTGATCTTGGACCTCTTTGGCCGTAC ATCTACCTTCCTGTCCGTCCGTCTGTGTGCCCCCCCCCCTCTCCCCCCCT CCTTGTTTTGGGAAGGGTGAGGCAGGGGAGCTCTGGAAGGTCTGGCAGAT CCAACAGGTTCGGGCCGCCAGACGCCGGGCTTGACGACGGCAAGGATGAC ATCGACAGCACTCTGATGATCAGGGTGGAAGGGGCTGACGGTGAGTCGCA TTTATGAACATACTTTAGTATTACCATGTATATATGTAGGTGTACGGAGA GGTTTTTTGCCGGTGGGGGTTGGGTCGGGGGGGGGCGCCGTTTGCCGCAT TGGAGTGGGGGAAGGTTGGGAGTGACGCTGCTGTCGGCCGCTTTTTGCCT GGCACTGTTGTGCTGATGCTGTGCTGGTAGTGTGTGTGTGTGTTTGTGTT TGTCGTTCGCGCCTTTGTGATCGTGGTGCGGGGCAGAGAGAGACACGTGG CGGTTGTTGCTCCTGTATTTAGAGTTTAGATGGAGCAGGTTTTTGGGCTG TGTCTTCATCTGTGATGTGGTTTGTCAAGCGGTTCCTGCGGGGTCGGTTT CAGCCGGTTGGATGATAGATACCCTCGCCTTCATCCTGCTGGACGTCTTT GAGATGGGACCACCACTCTATTTGGGATGTATCCCGCGTCCGCTACCGTT CGAGCTTTTAATCCCTACTCTTAAACCTTCTTGTAGATAGTATTAAAAAA CAACACACACACACATACACATACATGCGTACGTAGCCAGGACATGGCGT TCGCCAGACGAAAACCCTGAGCTATTCAGTACGCTCGGTATGTCCTATTC GTCCACGTTCTCGGCCTGGTTTTCCCAACCCCCGCCCCCCCCCCCCCCCC CATATAAAAATAACAAGTCGACAGCAGTAGCAGCTGCCCGTTTTGTTCTG CTACATCCCACCGGCAGGCAATCTATCTCTAAGTCTTGTCGTGTGACCCC TCTTTCAGCTTGCCCACGACAACAAAGCTTATTTACAGCGCTCCCTCATC TGCTCCCCCGCCTTTCTCCCCCCCCCCCTCCCCCCGCTCCCACTCTCCTC TCCCCTCGTAACCCCCTTGATGGGTCGGTGTGTTGGTGCCTTCTGCCGCT GCCGCTGCCGCTGCCGCCGCCGCCGAGCAGAGCTTATCCTCGAGGAGAAC TACGGCAAGGTGTACCCGTACTGCCTGGTAGACCTAGACGACCAGAGCCG CCGGACCAGCTCCGTCCAGTGCGCGTCGGTCTGCCCCTCCTGGGAAGAAG ACCTTATCTTTGACGTCTCCGTGCAGCAGTGGGTCCTTTCGAATCTCCGG ATCCAGGTAGGGGTGCTGTGTTCGTGTGTTGTGCCGTGTTTGAGGTGTGT GGGATGTGTGGGGGGTGTGTGTGTACTGCAGCATGTGTGTGTGTGTGTGG GGGGGGTCCGCTGCCGTTTTTTTTTCAGACGAATGCCATGGTTTCAGGCG AGGTGTTTGGCACGATGGCGAGTATGTACGTAAATATGCAGGTGGGGGTG TTTGCGTTGCGTGGACAGCTGTCTGTTGTGTGTGTTTATATATATGTACA TGCAGCAGTACTATGGAGTACTTGGTGCTGAAATACTTTTGTGTACCGAT GATCTCTCAAAGGCGCTTGTTGTGTTCGCCGGCGGAGGAAGCGCTTGTGC GCCTGCGTGTGCGTTCGTGCGTGTGCGCGTTTTTTTGTACAAGCGTGAGG CGATGTTGACCATTTTTTTTTGTTAGTCCTCTCGTACGCGAGAACGACCG CAAACGACGCCTCGTGTGTTTGGCTACTGTAGTGTACTTCATGTAAATAA GGTGAAAACAAAAGAGCGAGACGTGGAATCTGCGACCTCACGGTGTGCGT GTGCGTGTGCGTCCACGATGAAAAACATTTGTGTGTGCGGGGGGCGTGGC GTGTGTTGTTTGTTTCCCTGACGTGTTTGACATATTTTCCCGAAATCGAA CATCCTTGGTGACCATGTGCTCGCGGGGCACACTCGGAAGTGCAGCATGC TATTTACACGTATATACACCGAAAAATAAGAGGAATGCTACTCGGTATTG TAGTCGGGGCGAGGTGTCGGACACCATCAGCACCAAAAACAAAAAGTTAC TCTGTAGGTATGAAATAGAGAAGACATGAAAAAACGGTATACAGTGATGT ACCGTGCCAGGCAGGCCCAACAACGCAAGGCTTCCCCAACCCATCTTTTC ATGCCGGAAGGTTCCACGCCCCGGATTTTTCATCGTGTGTGAGCTTTTTT GTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCGCTTCTGTTTGTCCAGGTG TGGCACAAAGACCTGTTCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5460:113..5934+

>mRNA_L-elsbetiae_contig5460.13719.1 ID=mRNA_L-elsbetiae_contig5460.13719.1|Name=mRNA_L-elsbetiae_contig5460.13719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig5460:113..5934+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAGATCCCAAAAGCAAAAAGCGGGCACGCTCTCGGTGATGAAGTA
CAAGGTCACCATGTCACAGATGGACAGATCCCAAAAGCAAAAAGCGGGCA
CGCTCTCGGTGATGAAGTACAAGGTCACCATGTCACAGGCGGCTACGAAC
GCCCGCGAGTCGACCAGGCGGCGCAAGGACTCGGTCACGTCGAGGGCCAT
GCGCAGGGTCAAGCGGCCCGTGCACCAGAAGTGGACGGAGGCGCTGGACT
GGAAGAAGCGGACGTGCCTGCTCACGGGGGAGAGCCTCTCGCTCTTCAGC
GACCCCAAGGACACGGAGCCCAGCCAGATCGTGTACCTCAGGGGCGCCAA
CGCGGAGCCCGAGCTTGGGCAGGCGGCTACGAACGCCCGCGAGTCGACCA
GGCGGCGCAAGGACTCGGTCACGTCGAGGGCCATGCGCAGGGTCAAGCGG
CCCGTGCACCAGAAGTGGACGGAGGCGCTGGACTGGAAGAAGCGGACGTG
CCTGCTCACGGGGGAGAGCCTCTCGCTCTTCAGCGACCCCAAGGACACGG
AGCCCAGCCAGATCGTGTACCTCAGGGGCGCCAACGCGGAGCCCGAGCTT
GGGCAGGCTTTCAAGGAGTCCGCCTTCCGGGTGGAGACCAACAAGTGGAA
GAAGGGCGACGAGCTAGTTGACGGGACTGAGCGCCGCACCTTCACCTTCT
TAGCCGAGAGCAAGGACGAGAAGGAGCTTTGGCTCTACCAGATCAGGCTT
TCAAGGAGTCCGCCTTCCGGGTGGAGACCAACAAGTGGAAGAAGGGCGAC
GAGCTAGTTGACGGGACTGAGCGCCGCACCTTCACCTTCTTAGCCGAGAG
CAAGGACGAGAAGGAGCTTTGGCTCTACCAGATCAGGTGTGGCACAAAGA
CCTGTTCCTGAGTGTGGCACAAAGACCTGTTCCTGA
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