mRNA_L-elsbetiae_contig546.13718.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig546.13718.1
Unique NamemRNA_L-elsbetiae_contig546.13718.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig546.13718.1 vs. uniprot
Match: D8LQ07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ07_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-6
Identity = 46/110 (41.82%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    4 MLHHICAEGATGDG-RSMRSALAYALAPLAALDLVVGPARPAVGSFSGDAGDTGNKEAGIRG---TVFVTQAEVEATIAGAGCRNGGINDAG-GDSPRFQREEDILRSGG 318
            +L  +C  G  G G   + SALAYALAPLA LDLVV P   A      D  D GN  AG+      VF  +       AGAG    G ND G G+ PR +R   +  SGG
Sbjct:  503 LLRRVCTSGRGGTGAEELCSALAYALAPLAVLDLVVCPRNLAADLRPTDTRDAGNAPAGVEADGDAVFERRVTTSREEAGAG----GYNDEGSGERPRSER---LAESGG 605
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BLAST of mRNA_L-elsbetiae_contig546.13718.1 vs. uniprot
Match: A0A6H5LQT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQT4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 9.520e-6
Identity = 43/114 (37.72%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:    4 MLHHICAEGATGDGRS-MRSALAYALAPLAALDLVVGPARPAVGSFSGDAGDTGNKEAGIRG---TVFVTQAEVEATIAGAGCRNGGINDAGGDSPRFQREEDI----LRSGGN 321
            +L  +CA G  G G   + SALAYALAPL  LDLVV P   A      D  D GN  AG+      V   Q       AGAG   G  ++  G+ PR +R+ +     L+  GN
Sbjct:  629 LLRRVCASGRGGTGEEELCSALAYALAPLTVLDLVVCPRNLAADLRPTDNRDAGNAPAGVEADGDAVIERQVTANREEAGAG---GDSDEGSGERPRSERQAEAGGLPLKENGN 739
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig546.13718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ07_ECTSI1.070e-641.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LQT4_9PHAE9.520e-637.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig546contigL-elsbetiae_contig546:16847..17185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.3394396-UTR-L-elsbetiae_contig546:16846..168491622816572.3394396-UTR-L-elsbetiae_contig546:16846..16849Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig546 16847..16849 +
1691683656.0238836-UTR-L-elsbetiae_contig546:16846..168491691683656.0238836-UTR-L-elsbetiae_contig546:16846..16849Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig546 16847..16849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.3500571-CDS-L-elsbetiae_contig546:16849..171851622816572.3500571-CDS-L-elsbetiae_contig546:16849..17185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 16850..17185 +
1691683656.0356934-CDS-L-elsbetiae_contig546:16849..171851691683656.0356934-CDS-L-elsbetiae_contig546:16849..17185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 16850..17185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig546.13718.1prot_L-elsbetiae_contig546.13718.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig546 16850..17185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig546.13718.1

>prot_L-elsbetiae_contig546.13718.1 ID=prot_L-elsbetiae_contig546.13718.1|Name=mRNA_L-elsbetiae_contig546.13718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MLHHICAEGATGDGRSMRSALAYALAPLAALDLVVGPARPAVGSFSGDAG
DTGNKEAGIRGTVFVTQAEVEATIAGAGCRNGGINDAGGDSPRFQREEDI
LRSGGNRRLQGG
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mRNA from alignment at L-elsbetiae_contig546:16847..17185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig546.13718.1 ID=mRNA_L-elsbetiae_contig546.13718.1|Name=mRNA_L-elsbetiae_contig546.13718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=339bp|location=Sequence derived from alignment at L-elsbetiae_contig546:16847..17185+ (Laminarionema elsbetiae ELsaHSoW15)
GATATGCTGCATCATATTTGCGCCGAGGGGGCAACCGGGGATGGCAGGAG
TATGCGCTCGGCGCTAGCTTACGCTCTCGCTCCTCTCGCCGCTCTTGACC
TTGTAGTCGGTCCGGCCAGACCGGCCGTAGGCAGCTTCTCGGGGGATGCT
GGAGACACGGGAAATAAAGAAGCGGGTATCCGCGGCACCGTGTTCGTGAC
GCAGGCAGAAGTAGAAGCCACAATAGCGGGCGCAGGTTGTAGAAATGGTG
GGATAAACGATGCGGGCGGTGATAGTCCTCGGTTTCAGCGGGAGGAAGAT
ATTCTACGATCCGGGGGAAACCGTCGACTTCAAGGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig546:16847..17185+

>mRNA_L-elsbetiae_contig546.13718.1 ID=mRNA_L-elsbetiae_contig546.13718.1|Name=mRNA_L-elsbetiae_contig546.13718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig546:16847..17185+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCATCATATTTGCGCCGAGGGGGCAACCGGGGATGGCAGGAGTAT
GCGCTCGGCGCTAGCTTACGCTCTCGCTCCTCTCGCCGCTCTTGACCTTG
TAGTCGGTCCGGCCAGACCGGCCGTAGGCAGCTTCTCGGGGGATGCTGGA
GACACGGGAAATAAAGAAGCGGGTATCCGCGGCACCGTGTTCGTGACGCA
GGCAGAAGTAGAAGCCACAATAGCGGGCGCAGGTTGTAGAAATGGTGGGA
TAAACGATGCGGGCGGTGATAGTCCTCGGTTTCAGCGGGAGGAAGATATT
CTACGATCCGGGGGAAACCGTCGACTTCAAGGTGGGATGCTGCATCATAT
TTGCGCCGAGGGGGCAACCGGGGATGGCAGGAGTATGCGCTCGGCGCTAG
CTTACGCTCTCGCTCCTCTCGCCGCTCTTGACCTTGTAGTCGGTCCGGCC
AGACCGGCCGTAGGCAGCTTCTCGGGGGATGCTGGAGACACGGGAAATAA
AGAAGCGGGTATCCGCGGCACCGTGTTCGTGACGCAGGCAGAAGTAGAAG
CCACAATAGCGGGCGCAGGTTGTAGAAATGGTGGGATAAACGATGCGGGC
GGTGATAGTCCTCGGTTTCAGCGGGAGGAAGATATTCTACGATCCGGGGG
AAACCGTCGACTTCAAGGTGGG
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