mRNA_L-elsbetiae_contig546.13716.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: D8LQ08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ08_ECTSI) HSP 1 Score: 181 bits (458), Expect = 4.890e-49 Identity = 107/197 (54.31%), Postives = 128/197 (64.97%), Query Frame = 1 Query: 1 EEACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSLVRNHDQLEAEGERRDEGGAGXXXGREGLKYVDVGGASGDRHPASATDGAFELDLLQPAAVAAARRAEAGLREGAGGYKPRGSAPPGLSPLAASNAPVDPLSQFMTPRFITGEEVMFAPGSPTGGDDESFEYHN 591 EEACPYA CR GIL+ LL YITPARKYSTFVFVLEG+VLILTCLLICYNPRDSTEDILIKTG+++R H + EGG G + G GGA ++PA A+ A LDL+QPA A RRA A + GA G P A P +SP+A N P +PLSQF+TP+ G + + P S D E++EY N Sbjct: 211 EEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQH-------HKPGEGGGGEPDSQVGDLEGAPGGA---KNPAGASIHALRLDLVQPAG--AVRRAGAAGKRGAAGGSPD-RATPAMSPMAVENIPTEPLSQFLTPKR-GGNRITYGPDSGGEDDGETYEYQN 393
BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: A0A6H5JEQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ5_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 3.480e-20 Identity = 74/162 (45.68%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 109 LVLILTCLLICYNPRDSTEDILIKTGSLVRNHDQLEAEGERRDEGGAGXXXGREGLKYVDVGGASGD-RHPASATDGAFELDLLQPAAVAAARRAEAGLREGAGGYKPRGSAPPGLSPLAASNAPVDPLSQFMTPRFITGEEVMFAPGSPTGGDDESFEYHN 591 +VLILTCLLICYNPRDSTEDILIKTG++VR Q GER E G + D+ G G ++PA A+ A LDL+QPA AARRA A + GA G P S P +SP+A N F+TPR G + + P S G D E++ Y N Sbjct: 1 MVLILTCLLICYNPRDSTEDILIKTGTIVR---QQHKPGERGGE--------EPGSQAGDLEGTPGGAKNPAGASIHALRLDLVQPAG--AARRAGAVGKRGAAGGSPDRSTP-AMSPMAVEN--------FLTPRR-GGNRITYGPDSDGGDDGETYAYQN 139
BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: W7U843_9STRA (Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U843_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 9.800e-11 Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1 Query: 4 EACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSLV 195 +ACPY CR G+ L K + +KY F+ +L+ +VLI TC+LICYNPRDS ++L KTG ++ Sbjct: 262 DACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVI 325
BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: A0A812W7H9_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W7H9_SYMMI) HSP 1 Score: 67.8 bits (164), Expect = 5.280e-10 Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 Query: 4 EACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSL 192 + CPY CR G+LD L+ Y+ P + V + +++LTC+LICY P+D+ E +L+KTG++ Sbjct: 204 DKCPYDQCRAGVLDYLISYMEPLNVALLVIAVFQLCIMVLTCMLICYTPQDTVEQMLVKTGTI 266
BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: K0TPL8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPL8_THAOC) HSP 1 Score: 62.8 bits (151), Expect = 2.960e-8 Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1 Query: 1 EEACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSL 192 E ACPY CR I L K++ PA+ + GL+++L+ LLICYNPRDS E L KTG L Sbjct: 169 ESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVL 232
BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: A0A7S2G7W8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7W8_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.250e-8 Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1 Query: 10 CPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSLV 195 CPY CR + L + P +Y FV + E ++ILTC LIC+NPRD+ + IL+K+G+ Sbjct: 223 CPYDLCRRAAVTRFLGIVEPIGEYGIFVCIFETALMILTCCLICFNPRDAEQTILMKSGNFA 284 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig546.13716.1 >prot_L-elsbetiae_contig546.13716.1 ID=prot_L-elsbetiae_contig546.13716.1|Name=mRNA_L-elsbetiae_contig546.13716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp EEACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPback to top mRNA from alignment at L-elsbetiae_contig546:6830..9338- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig546.13716.1 ID=mRNA_L-elsbetiae_contig546.13716.1|Name=mRNA_L-elsbetiae_contig546.13716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2509bp|location=Sequence derived from alignment at L-elsbetiae_contig546:6830..9338- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig546:6830..9338- >mRNA_L-elsbetiae_contig546.13716.1 ID=mRNA_L-elsbetiae_contig546.13716.1|Name=mRNA_L-elsbetiae_contig546.13716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig546:6830..9338- (Laminarionema elsbetiae ELsaHSoW15)back to top |