mRNA_L-elsbetiae_contig5459.13715.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5459.13715.1
Unique NamemRNA_L-elsbetiae_contig5459.13715.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5459.13715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5459contigL-elsbetiae_contig5459:9624..10151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.184845-UTR-L-elsbetiae_contig5459:9623..98001622816572.184845-UTR-L-elsbetiae_contig5459:9623..9800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5459 9624..9800 +
1691683655.9507587-UTR-L-elsbetiae_contig5459:9623..98001691683655.9507587-UTR-L-elsbetiae_contig5459:9623..9800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5459 9624..9800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.1953156-CDS-L-elsbetiae_contig5459:9800..101511622816572.1953156-CDS-L-elsbetiae_contig5459:9800..10151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5459 9801..10151 +
1691683655.9615223-CDS-L-elsbetiae_contig5459:9800..101511691683655.9615223-CDS-L-elsbetiae_contig5459:9800..10151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5459 9801..10151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5459.13715.1prot_L-elsbetiae_contig5459.13715.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5459 9801..10151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5459.13715.1

>prot_L-elsbetiae_contig5459.13715.1 ID=prot_L-elsbetiae_contig5459.13715.1|Name=mRNA_L-elsbetiae_contig5459.13715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MITQQAFSFCPNSVTSHHHPNGGLDGDAKCMHRKKMAHDVSKPIDNRPWR
LAPLQQSFGVCPIYNPSATRLFFFRVPRSSDCQRSASLYPVETPCAWWYI
NSTHQGKLHCRQSCLPP
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mRNA from alignment at L-elsbetiae_contig5459:9624..10151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5459.13715.1 ID=mRNA_L-elsbetiae_contig5459.13715.1|Name=mRNA_L-elsbetiae_contig5459.13715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig5459:9624..10151+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCCATGTACTTTGCGGCCTGCTTGCTGCTGGCAGGACACCTAGGAGAA
ACCTATGCAAAATTGCCGGTAGATCCAGCCGCAGCAAATTGTCTCACGCC
GCTCAGCAGGCTTGACAGCCGGCGTGATCAAACATTTACGCAGACGGGAG
TATCCTGGGGAAGAGTGGAGGGCCACGATGATTACCCAACAAGCTTTCAG
CTTTTGCCCCAATAGCGTCACGAGTCACCATCATCCCAATGGTGGTCTCG
ATGGCGACGCTAAATGTATGCATCGAAAAAAGATGGCGCACGATGTCTCA
AAACCCATCGACAATCGCCCATGGCGGTTAGCGCCCTTGCAGCAGTCCTT
TGGCGTGTGTCCGATATATAATCCTTCCGCCACGCGATTGTTCTTCTTCC
GCGTTCCACGTTCATCCGACTGCCAACGCTCCGCTTCGTTGTATCCGGTC
GAAACTCCGTGCGCTTGGTGGTACATAAATAGCACACATCAAGGTAAATT
ACACTGCAGGCAATCCTGCCTTCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5459:9624..10151+

>mRNA_L-elsbetiae_contig5459.13715.1 ID=mRNA_L-elsbetiae_contig5459.13715.1|Name=mRNA_L-elsbetiae_contig5459.13715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig5459:9624..10151+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTACCCAACAAGCTTTCAGCTTTTGCCCCAATAGCGTCACGAGTCA
CCATCATCCCAATGGTGGTCTCGATGGCGACGCTAAATGTATGCATCGAA
AAAAGATGGCGCACGATGTCTCAAAACCCATCGACAATCGCCCATGGCGG
TTAGCGCCCTTGCAGCAGTCCTTTGGCGTGTGTCCGATATATAATCCTTC
CGCCACGCGATTGTTCTTCTTCCGCGTTCCACGTTCATCCGACTGCCAAC
GCTCCGCTTCGTTGTATCCGGTCGAAACTCCGTGCGCTTGGTGGTACATA
AATAGCACACATCAAGGTAAATTACACTGCAGGCAATCCTGCCTTCCCCC
CATGATTACCCAACAAGCTTTCAGCTTTTGCCCCAATAGCGTCACGAGTC
ACCATCATCCCAATGGTGGTCTCGATGGCGACGCTAAATGTATGCATCGA
AAAAAGATGGCGCACGATGTCTCAAAACCCATCGACAATCGCCCATGGCG
GTTAGCGCCCTTGCAGCAGTCCTTTGGCGTGTGTCCGATATATAATCCTT
CCGCCACGCGATTGTTCTTCTTCCGCGTTCCACGTTCATCCGACTGCCAA
CGCTCCGCTTCGTTGTATCCGGTCGAAACTCCGTGCGCTTGGTGGTACAT
AAATAGCACACATCAAGGTAAATTACACTGCAGGCAATCCTGCCTTCCCC
CC
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