mRNA_L-elsbetiae_contig5458.13714.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5458.13714.1
Unique NamemRNA_L-elsbetiae_contig5458.13714.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: D7FXK0_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXK0_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 5.380e-70
Identity = 172/308 (55.84%), Postives = 193/308 (62.66%), Query Frame = 1
Query:    1 AGTAAWGCLILFGAPEDDSDTIRLVIVAVGAFIALLAMVSYLFTACTDPGIVFRHLA-------AAPH-PAAGGQQLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEGKAVAG----WENDDFEAQQMLEILTEDYRDAVSTSQSAPVAPSDASAFAGGGRNGNNSGKVRGVLLAGLPPEECAAAVDGGSAAVADMRNVPPRDGEGAXXXXXXXXXXXXXXXXXXXXGGGFADGAAVCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVCVWTLVVYVLL 888
            AGT  WGCLI+FGAP+D  D +R +IVA+G  +AL+ M  YL TACTDPGIVF+H A       AA H P   G +                 XXXXXXXXXXXXXXXXXXXXXX EEGK   G    W  +D EAQQ+L+ILT+DYR+   + + A VA ++                       GLPPE+CAAA D GS AVADMRNVP            XXXXXXX        GGG  D A +CGRCQIERPPGAVHCT CGVCVQKLDHHCPFMGQCVGRKTLV FYLFVV VW L+VYVLL
Sbjct:   18 AGTVGWGCLIIFGAPDDGGDMLRTIIVAIGGGLALVTMAFYLSTACTDPGIVFKHTATPVRGTPAAGHGPRGSGGRSALLALSAGAGTPVPTGXXXXXXXXXXXXXXXXXXXXXXAEEGKEAQGAGATWGTEDVEAQQILDILTDDYREGAKSHEVATVAAAEE----------------------GLPPEDCAAAADAGSKAVADMRNVPXXX---------XXXXXXXPRQRGATVGGG--DSATICGRCQIERPPGAVHCTLCGVCVQKLDHHCPFMGQCVGRKTLVPFYLFVVSVWFLIVYVLL 292          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: D7G1J4_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 7.240e-15
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  694 DGAAVCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVC 858
            +G  +CGRC ++RP GA+HC +C VCV K DHHCP+ G+C+G K +  FYLF+ C
Sbjct:   76 EGGVLCGRCDVKRPAGAIHCNECNVCVTKFDHHCPWTGKCIGEKNIRFFYLFLGC 130          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: A0A6H5KUF9_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.770e-14
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  694 DGAAVCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVCVW 864
            +G  +CGRC ++RP GA+HCT C VCV K DHHCP+ G+C+G K +  FYLF+ C++
Sbjct:  148 EGGLLCGRCDVKRPAGAIHCTACNVCVTKFDHHCPWTGKCIGEKNIRFFYLFLGCLF 204          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: A0A2D4C2P6_PYTIN (Palmitoyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2P6_PYTIN)

HSP 1 Score: 80.9 bits (198), Expect = 2.390e-14
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  700 AAVCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVCVWTLVVYVLL 888
            A +C +CQ+ RP  A HC  CGVCV+KLDHHCP+ G+C+GR+TL+ FYLF+   W + +++++
Sbjct:  151 AVICAQCQLRRPKDASHCADCGVCVRKLDHHCPWTGKCIGRRTLMLFYLFL---WAITIHLVI 210          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: A0A5D6XHI2_9STRA (Palmitoyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHI2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.660e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  685 GFADGAAVCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVCVWTLVVYV 882
            G A+   +C +CQI RP  A HC+ CGVC+ +LDHHCP+ G+C+G +TL  FY+F+ CV   VV V
Sbjct:  122 GDAELGVICAQCQIRRPYDASHCSDCGVCIAQLDHHCPWTGKCIGGRTLRWFYVFLACVSVHVVLV 187          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: M4BNT3_HYAAE (Palmitoyltransferase n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNT3_HYAAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.510e-12
Identity = 26/52 (50.00%), Postives = 42/52 (80.77%), Query Frame = 1
Query:  706 VCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVCV 861
            VC +C++ RP  A HC+ CGVC+++LDHHCP+ G+C+G++T+  FY+F+ C+
Sbjct:  118 VCAQCEVRRPLDASHCSDCGVCIRELDHHCPWTGKCIGKRTIKLFYVFLTCI 169          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: A0A6G0X8K6_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8K6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.080e-12
Identity = 28/63 (44.44%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  706 VCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVCVWTLVVYVLLAV 894
            +C  CQI RP  A+HC +CGVC+  +DHHCP+ G+C+G++T++ FYLF+   W + +++ L++
Sbjct:  128 LCAHCQIRRPAEAIHCYECGVCIDGMDHHCPWTGKCIGKQTIMWFYLFL---WMICIHLALSI 187          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: A0A1V9Z9R5_9STRA (Palmitoyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9R5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.210e-12
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  706 VCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVCVWTLVVYVLLAVAYLV 906
            +C  C+I RPP AVHC +C VC+  LDHHCP+ G+C+G++T+  FYLF+   W + +++  +V+ LV
Sbjct:  129 LCAHCRIRRPPNAVHCYECDVCIDGLDHHCPWTGKCIGKRTIWWFYLFL---WMITLHLTFSVSVLV 192          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: G4YVS6_PHYSP (Palmitoyltransferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YVS6_PHYSP)

HSP 1 Score: 71.6 bits (174), Expect = 9.300e-12
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1
Query:  706 VCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLF 849
            VC +C++ RP  A HC+ CGVCV+ LDHHCP+ G+CVG++T+  FY+F
Sbjct:   69 VCAQCELRRPQNASHCSDCGVCVRGLDHHCPWTGKCVGKRTIKWFYVF 116          
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Match: A0A7S2WQ11_9STRA (Palmitoyltransferase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WQ11_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.260e-11
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  694 DGAAVCGRCQIERPPGAVHCTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFV--VCVWTLVV 876
            DG   C RC I R PG +HC++C +C++ LDHHCP+ G+C+GRK ++ F +F+  VCV+ + V
Sbjct:  161 DGLLACTRCNIYRKPGTIHCSECDICIEGLDHHCPWTGKCIGRKNILYFRVFLGMVCVFLIAV 223          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5458.13714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXK0_ECTSI5.380e-7055.84Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
D7G1J4_ECTSI7.240e-1554.55Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KUF9_9PHAE1.770e-1454.39Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A2D4C2P6_PYTIN2.390e-1450.79Palmitoyltransferase n=1 Tax=Pythium insidiosum Ta... [more]
A0A5D6XHI2_9STRA9.660e-1351.52Palmitoyltransferase n=1 Tax=Pythium brassicum Tax... [more]
M4BNT3_HYAAE1.510e-1250.00Palmitoyltransferase n=2 Tax=Hyaloperonospora arab... [more]
A0A6G0X8K6_9STRA7.080e-1244.44Palmitoyltransferase n=1 Tax=Aphanomyces euteiches... [more]
A0A1V9Z9R5_9STRA9.210e-1246.27Palmitoyltransferase n=1 Tax=Thraustotheca clavata... [more]
G4YVS6_PHYSP9.300e-1256.25Palmitoyltransferase n=1 Tax=Phytophthora sojae (s... [more]
A0A7S2WQ11_9STRA1.260e-1147.62Palmitoyltransferase n=1 Tax=labyrinthulid quahog ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5458contigL-elsbetiae_contig5458:4927..11051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue1.4e-58
Seed eggNOG ortholog2880.D7FXK0
KEGG koko:K16675
KEGG Pathwayko04391,map04391
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-28_001990.1
Exons5
Model size933
Cds size933
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5458.13714.1prot_L-elsbetiae_contig5458.13714.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5458 4927..11051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.1003048-CDS-L-elsbetiae_contig5458:4926..50381622816572.1003048-CDS-L-elsbetiae_contig5458:4926..5038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 4927..5038 -
1691683655.9001436-CDS-L-elsbetiae_contig5458:4926..50381691683655.9001436-CDS-L-elsbetiae_contig5458:4926..5038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 4927..5038 -
1622816572.1133995-CDS-L-elsbetiae_contig5458:6291..64581622816572.1133995-CDS-L-elsbetiae_contig5458:6291..6458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 6292..6458 -
1691683655.9107714-CDS-L-elsbetiae_contig5458:6291..64581691683655.9107714-CDS-L-elsbetiae_contig5458:6291..6458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 6292..6458 -
1622816572.124962-CDS-L-elsbetiae_contig5458:8136..84121622816572.124962-CDS-L-elsbetiae_contig5458:8136..8412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 8137..8412 -
1691683655.9219077-CDS-L-elsbetiae_contig5458:8136..84121691683655.9219077-CDS-L-elsbetiae_contig5458:8136..8412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 8137..8412 -
1622816572.1411016-CDS-L-elsbetiae_contig5458:9600..97471622816572.1411016-CDS-L-elsbetiae_contig5458:9600..9747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 9601..9747 -
1691683655.931432-CDS-L-elsbetiae_contig5458:9600..97471691683655.931432-CDS-L-elsbetiae_contig5458:9600..9747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 9601..9747 -
1622816572.1515896-CDS-L-elsbetiae_contig5458:10820..110511622816572.1515896-CDS-L-elsbetiae_contig5458:10820..11051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 10821..11051 -
1691683655.9409928-CDS-L-elsbetiae_contig5458:10820..110511691683655.9409928-CDS-L-elsbetiae_contig5458:10820..11051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5458 10821..11051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5458.13714.1

>prot_L-elsbetiae_contig5458.13714.1 ID=prot_L-elsbetiae_contig5458.13714.1|Name=mRNA_L-elsbetiae_contig5458.13714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=311bp
AGTAAWGCLILFGAPEDDSDTIRLVIVAVGAFIALLAMVSYLFTACTDPG
IVFRHLAAAPHPAAGGQQLQQQRQQQQAPAGAGTPVPPGVGGPGKGRATV
AVSGGGGEEEGKAVAGWENDDFEAQQMLEILTEDYRDAVSTSQSAPVAPS
DASAFAGGGRNGNNSGKVRGVLLAGLPPEECAAAVDGGSAAVADMRNVPP
RDGEGASAAAVQQQQQQQVGAGAAAEGGGFADGAAVCGRCQIERPPGAVH
CTQCGVCVQKLDHHCPFMGQCVGRKTLVSFYLFVVCVWTLVVYVLLAVAY
LVIAVIASGL*
back to top

mRNA from alignment at L-elsbetiae_contig5458:4927..11051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5458.13714.1 ID=mRNA_L-elsbetiae_contig5458.13714.1|Name=mRNA_L-elsbetiae_contig5458.13714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6125bp|location=Sequence derived from alignment at L-elsbetiae_contig5458:4927..11051- (Laminarionema elsbetiae ELsaHSoW15)
GCAGGCACGGCGGCGTGGGGGTGCCTGATCCTCTTCGGGGCCCCCGAGGA TGACTCGGACACGATCCGCCTGGTCATCGTCGCGGTGGGCGCCTTCATAG CCCTGCTGGCAATGGTGTCCTACCTCTTCACCGCCTGTACGGACCCGGGC ATCGTCTTCAGGCACCTCGCGGCTGCTCCCCATCCGGCGGCGGGAGGGCA GCAGCTGCAGCAGCAGCGGCAGCAGCAGCAGGTGGGTCGGGGTGCCGGGG GCGGCGGTGGCTTCGGCTTCGGCTTCGGCAGGAGCCAGAGTGGAGAAAAA TGGGTTGTTACGATATGCAGGGAAGCAAGCCATACCATGCTTTTTGGCTT TTCGTGTGGTTGGTTGTTTACCTATTTTTGCGGGCGCCTTCTTTTGGCCA GCGAGCAGTCCCTGTGTGACCACGGTTCAATACTCTTGGCAAGATGCCCT CGTGGCAAGGAACCCACCGAGCACTGGGGCGGCAAACCTATCGATACTAT ACGTAGCGATGGTGTTTTGGCAGAGGATTGTCCAACAGTGGTATGGGCAC GGCGGGGTGCAAAGGCTCATGTATTTACAATAGCCGCATTTTTTTGGTTA GTTTTTGTTCCTTTTTTTTTTTTATCCTTTCTATTCTCTGACCTAAACTA ATTCTATACGATATACCGTCTCCTCTTGCGGTGCACACACGTTTCGGTGT AAGTAGCACACTCGCGCATTGCGGTGTGCATGCATGGCATGTACTCTAAT AAACAATTGAGGAGACGTTTCGGCCGGGGGGTCCGCAGGAGAGGTACCTA CCTACCTACCCACACCGGAGTTTTTTCGCCTTTTTATTTTTATGTTGTCG CCACCTTTATGTACCTCCTGCGGTGTTTGCCAACACACAGGTTTTTGTCG CGATTCCCTTCCCTCGTCAACAACGGTGAAGTCAGTTTTTTGTGGACTCA CGAGCTTCTCGGCTCCTCGCCTTGTAGGTACTATCTACTGCGCTGTAGAA TCGCAATAGAACCATCCCCATTGAGAATCGAACTCCAGACCTTGCCGCTA GTACATAAGTCAACGGGTAAACTACTAGAGCTAGACCACCGGGGTTGCTT CTGCGCCGGTACAAGACCACGAGGACCCCCCGGGCTGTCAGCATCATGCC CGCGACCCCCTCCCCCTTGTTTACCTTTCAAGCATCGCTTCAGTGCCCCC CCGCGCGCGCCCCATGGGAGTGTATCAAGTCGATGAGAAGAGAAACCCCC CTCCACCCCCCCCCTCCCCGTTTCTCCCCGCACACTCGTCAATCAATCGT GCAGGCACCCGCCGGGGCTGGAACCCCGGTGCCCCCCGGCGTCGGGGGCC CCGGCAAGGGCCGGGCAACAGTGGCAGTGTCCGGCGGAGGCGGGGAGGAA GAGGGGAAGGCCGTGGCGGGGTGGGAAAACGACGACTTTGAGGCCCAACA GGTAAAAACAGATGGAACGACCTTGTTGTTCGGCCCCGCCGGGGGGCCCG TGGGGTAGTGGCCAAGGGGCCTGCCGGAATGCAGGGCAGGCACCACATCC GCAAAACATCGATAAGGCCAGAATCGAGAAGGGGAGGGGGGGGTATACTG TATGTAGCCCATTTACTTTATTTGGGGGCTCGCAGATGGCATGTCCTGAT GGAGGGGGGGGGGGAACGTGTGTGGGGGGGATTATATCCTCACACGGACG GATCCCCCCTGTACTAACTCCTATACAAACAAAACATCGACAAGCCCAGA ATGTAGTGGCCGGCTGGCTGCCTCTGCTGCTGCTGCTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCTGTTGTTGCCTTGCTGCCGCTGTTGAACCAT GTGTTGGCGCGCCGAGCGAAGAGATGCAAATGCTGTTGCATGGTGGTAGG TTGTTGAGGGCACACTACTGCTGTTGTGCACACGCAGCCGGAGAGCCTTG CGGTGGTGAAGAGTGTGTCCCTGAAGCTTCATGCCGAGGGCAGGGTGCTT GGGGTCTACGCAGCGGTAGCCTACTAATTGCATGCTGCTGTGGGGGCTGC CGTAGTTTTCCTGCTGCAGCGTGTCCAAGGCACATCGCCTGGCTGAATCT GCACCATCTGCTCTTTGCTCTCATATGAAGAGAGGCGGTGCGGCGCGCAC CAGATAGACACGCTTGCAGCAAGACGCAACTGCACACTGCGCTGCACGAC GCGCTGCCGCTTCCTAGCGAGGCACGACATACACACACACACACACAACC GTGCTGCTATGAAAATGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTA GTGGTAGTGGAGGAAGTGGGCCAGTGGGGCGGGCGGACGACAAATGTGCC AATGATTGGCGAAATTAAAAAAAAAAATACTGCTGCTGCTGCTGAGAGAA ACACACGCGCACGCGCACACGTTACGCGCGCTTTTTTTCGCACGTACCCC CCCCCCCCCAAACAAATGCGGGGGATCCGGCCGGGGGCTTCCGGGGATGC GCCTGCCCCACCCCAACCACCACCAGGGGCCCCCCNNNNNNNNNNAAATA GTGCTGCGGGCGGCGGGAGACAACCGCGCCCGGCCGCACCCGCGACGGCC GCTTTTTTTGCGCCGGCCCCCCCCCCCCCCCCCAAACAGATGCTGGAGAT TCTGACGGAGGATTACCGGGATGCCGTCTCCACATCGCAATCAGCACCAG TAGCCCCCTCCGACGCTTCCGCCTTTGCCGGGGGGGGTCGGAACGGGAAT AATAGCGGCAAGGTACGCGGGGTTCTTCTGGCGGGGCTCCCTCCCGAAGA GTGCGCCGCCGCCGTCGATGGCGGCTCGGCTGCCGTCGCCGACATGCGGA ACGTGCCCCCACGGGACGGGGAAGGCGCATCAGCCGCGGCCGTGCAGCAG CAGCAGCAGCAGCAGGTGTGTGGTCGGTAATAGGTAGATCTGCCGACGAC GTGGTCCGCGCGCTTGGCTCTGTGCTCTGTCACTCTGTTGTTGTTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTCACATTCGCTCTCTAGTCC AAAACATCCTTGGGGGCCCGTGGTCACAGAACAAGGCACACTCGACGCCG CGGAAGAAAAATAAAACAAAATCTGTCACTCTGTTGTGTATCTAGGTAGG CAGGTATTTTTATTTTTGGTGTTGTTTGGTTCGTGCCCTTGTTCTTTCTT CCTCTCCGTCCTCCTTCTTGCAAGTATTTCGTTTGTCCTTGTGTCCCGAC AATTTGCAGATAAAAATCCGTATCGAGTCCTTGCTCTAGTGTGGGGTAGG TTCCATCTTTGATTCATTGTTTATTTAAAAAAAATCCAGGCATGACAAAC GTAAACCCCTAAACATCAGTCGTGGCGTCCGTACTGAAAACCTCCAATCA CTTAACAAAGCTCGCCTGAGACTCCTGCGGCCTTTGCTCGAAATGCTGAT ATGTAATCTAGGCATGCATTCATTGTGAAGGAAGCAAGCACACCCGCGTC GCAGGGGGCTCCGTATCGCACTTATGGAAAACTTTGTTCACGAGCGCCAG AATTTCGAAGCCCCCGCTGACCCACTTAGCCGTGGGGCTGGGCAGTCACT TCGTAATACATACATAGCTCTGACTCTAGTTGAGATCCAAAATTACTCCG ACCTTCTATGGAATCTGTGTTGATTCCTCTACAGCCTGGCGCACCACCGC AAAGCTTTTTGGCCCATGTTTTCGGCTGCCGATGAGCGATAGAGGTTCAA ATCGGGGAGATTTTTCGGGGGGAAAATCAACATCATTATTGGAGGTAGAT TCATGGTGCGTGACTTTGTTCCCTTCCGTGAACGAGAGGTGACTTTTAAG TGTTCGCTGATGTGGCCGTCATGCCTGGTATGTACATTCGTAGAAAGCAG AGGGGTTGCCCGCAAAAGAATGGACGCCTTGGTACTCTCCAAGCGCGCGC GTCTCTTATGTACCTAAATCGTTTCTGTGTGTGCATCGCACCGTCGACGA GGGAAAGGGACGGCTGGACCCCTTTTCTCGCGATGAAAATAGTGGGCAAG CACCGCAGAAGCGGGGAGTGGGGCCTCTCGGGGAAAGGAACCCTTCTGTT GTGACCACGGTTTGGTACTCTGGCAAGATGCCCTCCTCGTGACGGGGAGC CCATCGAACACTGGAAATAAATGTGAAGAAGATAAGAATATATATATCGC AAAATCCGGAGGCCGGCCGCCCGCGCTGCCCGTCCTCCTCCCATGACCCC TCCCGCACGGCTCCCTCACGGTGCCCAAAGTAGAAAAGCTACTACTGCTG TAGGTAGCAATCAGAAAGTGAGGGAGTTATTTTGTTTTCAACCCTTACGA TCATGTCCGCAGGAGGGGGTCCAACAACCCCCCCTCCTGTGTGACCCCCG GTTGGGTCGTCTAGCTTGTTATAGTCGTAGTGGAGGAAGGGGGGCCAGTG GGGCAGACGACAAATATGCCAAATGATGGGCGGGAAACAAAAAAATTAAA AAATGTCGTGGTTGGCTGAATTACGAAACAACCCTTTTGTTTTACCCGCT GCTGGTTTCGGCCGGCGCCTGCCCCTTCTTGTCATCGAAAAAGGTCGGGG CTGGTGCGGCCGCCGAGGGAGGGGGGTTCGCCGATGGTGCGGCGGTGTGC GGGCGCTGTCAGATCGAGCGCCCCCCGGGTGCGGTCCACTGCACTCAGTG CGGCGTCTGCGTGCAGAAGCTGGACCACCATTGCCCCTTCATGGGCCAGT GTGTCGGCAGGTGAGAGAAAAGAGGCCCGAGACAAGTATCGGGGTAATAA AAGGAGATGGAGATGAATAATACCACTGCGGCTAAATTAGTTACTACGCC GCGCCCCAAAAATGGTGCGTTGCTTTCTGATCTGCGGGGACCCTCGTCCG AGCGCTTGTAAAACGTGTGGGCATCTGTGAGAGAAAAAGAAAAAAGAGAG GGAGATAGAGGGGAAGGGAGGAAAACGCCCTAGCATGTCCGTGCGTGGGA GATGTGCGGAAAGGTTGTAGGTAGACGTTCCTTCGTCTTGTGTATGGATA GGCATGCTCGAGACCGACTGAAGATATAGGGGGTCGCTCCGCTGGAAACT GAGCCCCCGCCTCCCCCCTCCTCCTCCTCGCTCAAGCCTACATTTATGTA GCTACCTGTCCTGTGTGCTGGATTTGTACACTGTTGTTTCCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCTCTCT CTCTTTCTCTCTGTCTCTGTCTATCTCTCTCTCTTTCTGTGTGTCTCTAT CTATCTATCTATCTGTGTGTCTCTCTATCTGTGTCTCTTTCTCTTCCTCT ATCTATCTCTCTCTATGTGTCTCTCTATCTGTATCTGTCTCTCTCTCTGT CACGGTGAAGGCGTTTTTTCTGTTTCGCTACCTTTTGTGTTGGTGGCAAG CCCGTTGTCCGTATTCTCCCGGTAAACTTGTACGTGCCGCGTTGTGTTAT CGACGTTTCGAGAAGTGTGCCGGTACTGCTTGCATATGCGTACAAACATA CTTGTACATACATATGTATGTAGCACCCGATAGTGTGGCAACAGACTAGA TACCGTTCCGGCCGCCGCGCGCTCGAAATGCAATGTCTGCTGTGTGTGCC GCGTCGACGTCGCCCCTACCGACTTTGTTGTTATCTGTTTGGTGCGAAAA AAAAGGGGGGCCTGTGTCTGAACTGGGCTGTGCTGCTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTACGGCGGTGGCGG TAGAAAGAGGAGTGTGGTTGGTTGGTGCCTGGCGAGGTATCCACGCAAAG GCACGTGAACAACAGCGTACGGTTCGCTTCTCTCTGCCACTGGCGGTGAC ACCCTCATCCCCCCTCCCTCCCTGCTGCTATTTTTGTCCCGCCCGCCTTC GTCTGTTTCTTCTTCTTCTTCGGTCTGTTTTTTTTGCATTTGTTTTTCTT CTCTCTTTTTCAGGAAAACCCTGGTGTCTTTCTACCTGTTCGTGGTGTGC GTGTGGACTCTCGTCGTCTACGTTTTGCTCGCCGTAGCGTACCTCGTTAT CGCGGTGATCGCAAGCGGGTTGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5458:4927..11051-

>mRNA_L-elsbetiae_contig5458.13714.1 ID=mRNA_L-elsbetiae_contig5458.13714.1|Name=mRNA_L-elsbetiae_contig5458.13714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1866bp|location=Sequence derived from alignment at L-elsbetiae_contig5458:4927..11051- (Laminarionema elsbetiae ELsaHSoW15)
GCAGGCACGGCGGCGTGGGGGTGCCTGATCCTCTTCGGGGCCCCCGAGGA
TGACTCGGACACGATCCGCCTGGTCATCGTCGCGGTGGGCGCCTTCATAG
CCCTGCTGGCAATGGTGTCCTACCTCTTCACCGCCTGTACGGACCCGGGC
ATCGTCTTCAGGCACCTCGCGGCTGCTCCCCATCCGGCGGCGGGAGGGCA
GCAGCTGCAGCAGCAGCGGCAGCAGCAGCAGGCAGGCACGGCGGCGTGGG
GGTGCCTGATCCTCTTCGGGGCCCCCGAGGATGACTCGGACACGATCCGC
CTGGTCATCGTCGCGGTGGGCGCCTTCATAGCCCTGCTGGCAATGGTGTC
CTACCTCTTCACCGCCTGTACGGACCCGGGCATCGTCTTCAGGCACCTCG
CGGCTGCTCCCCATCCGGCGGCGGGAGGGCAGCAGCTGCAGCAGCAGCGG
CAGCAGCAGCAGGCACCCGCCGGGGCTGGAACCCCGGTGCCCCCCGGCGT
CGGGGGCCCCGGCAAGGGCCGGGCAACAGTGGCAGTGTCCGGCGGAGGCG
GGGAGGAAGAGGGGAAGGCCGTGGCGGGGTGGGAAAACGACGACTTTGAG
GCCCAACAGGCACCCGCCGGGGCTGGAACCCCGGTGCCCCCCGGCGTCGG
GGGCCCCGGCAAGGGCCGGGCAACAGTGGCAGTGTCCGGCGGAGGCGGGG
AGGAAGAGGGGAAGGCCGTGGCGGGGTGGGAAAACGACGACTTTGAGGCC
CAACAGATGCTGGAGATTCTGACGGAGGATTACCGGGATGCCGTCTCCAC
ATCGCAATCAGCACCAGTAGCCCCCTCCGACGCTTCCGCCTTTGCCGGGG
GGGGTCGGAACGGGAATAATAGCGGCAAGGTACGCGGGGTTCTTCTGGCG
GGGCTCCCTCCCGAAGAGTGCGCCGCCGCCGTCGATGGCGGCTCGGCTGC
CGTCGCCGACATGCGGAACGTGCCCCCACGGGACGGGGAAGGCGCATCAG
CCGCGGCCGTGCAGCAGCAGCAGCAGCAGCAGATGCTGGAGATTCTGACG
GAGGATTACCGGGATGCCGTCTCCACATCGCAATCAGCACCAGTAGCCCC
CTCCGACGCTTCCGCCTTTGCCGGGGGGGGTCGGAACGGGAATAATAGCG
GCAAGGTACGCGGGGTTCTTCTGGCGGGGCTCCCTCCCGAAGAGTGCGCC
GCCGCCGTCGATGGCGGCTCGGCTGCCGTCGCCGACATGCGGAACGTGCC
CCCACGGGACGGGGAAGGCGCATCAGCCGCGGCCGTGCAGCAGCAGCAGC
AGCAGCAGGTCGGGGCTGGTGCGGCCGCCGAGGGAGGGGGGTTCGCCGAT
GGTGCGGCGGTGTGCGGGCGCTGTCAGATCGAGCGCCCCCCGGGTGCGGT
CCACTGCACTCAGTGCGGCGTCTGCGTGCAGAAGCTGGACCACCATTGCC
CCTTCATGGGCCAGTGTGTCGGCAGGTCGGGGCTGGTGCGGCCGCCGAGG
GAGGGGGGTTCGCCGATGGTGCGGCGGTGTGCGGGCGCTGTCAGATCGAG
CGCCCCCCGGGTGCGGTCCACTGCACTCAGTGCGGCGTCTGCGTGCAGAA
GCTGGACCACCATTGCCCCTTCATGGGCCAGTGTGTCGGCAGGAAAACCC
TGGTGTCTTTCTACCTGTTCGTGGTGTGCGTGTGGACTCTCGTCGTCTAC
GTTTTGCTCGCCGTAGCGTACCTCGTTATCGCGGTGATCGCAAGCGGGTT
GTAGGAAAACCCTGGTGTCTTTCTACCTGTTCGTGGTGTGCGTGTGGACT
CTCGTCGTCTACGTTTTGCTCGCCGTAGCGTACCTCGTTATCGCGGTGAT
CGCAAGCGGGTTGTAG
back to top