mRNA_L-elsbetiae_contig5456.13712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5456.13712.1
Unique NamemRNA_L-elsbetiae_contig5456.13712.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: D7G092_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G092_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 7.330e-40
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAVDIHFAGLLEHDQG 294
            QVFQR+T+DLHGLHV+EAV+VLD EM  LA RG+ SVRVLTGTGHHSKGPTNK RL+PAVE FC  RG+   K+PD+STGHVGA+D+ FA L EH  G
Sbjct:   27 QVFQRKTLDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAKLSEHSTG 124
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: A0A6H5JKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.840e-35
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAVDIHFAGLLEHDQG 294
            QVFQR+T+DLHGLHV+EAV+VLD EM  LA RG+ SVRVLTGTGHHSKGPTNK RL+PAVE FC  RG+   K+PD+STGHVGA+D+ FA L EH  G
Sbjct:  554 QVFQRKTMDLHGLHVAEAVEVLDREMGALAARGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTG 651
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: F0WYU9_9STRA (Uncharacterized protein AlNc14C400G11359 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYU9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.120e-16
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAVDIH 264
            QV++ R +DLHGLHV EAV+ L + +  LA  G+ +VR++TGTGHHS+GP N  RL+PAVE+F  T G+    + DR  G+VG + ++
Sbjct:  453 QVYRDRLMDLHGLHVVEAVEFLRSWLPQLAEDGLDTVRIVTGTGHHSRGPQNTARLLPAVEHFLRTEGYESESVADRK-GYVGMLQVN 539
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: A0A024GR71_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR71_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.940e-14
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAVDIH 264
            QV++ R +DLHGLHV EAV  L + +  LA  G+  +R++TG GHHSKGP N  RL+PAVE F  + G+    + DR  GHVG + ++
Sbjct:  915 QVYRDRLMDLHGLHVVEAVAFLQSWLPQLAEDGLELIRIVTGAGHHSKGPQNTARLLPAVEQFLRSEGYEYKSVVDRK-GHVGMLQVN 1001
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: A0A484DXY4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXY4_BRELC)

HSP 1 Score: 82.4 bits (202), Expect = 4.170e-13
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAV 255
            Q++  R +DLHGLHV+EAV++L   +   A  GV S+ ++TG+GHHSKGPT  +RL+PAVE+F    G+  T + D   G VG +
Sbjct:  498 QLYMDRMMDLHGLHVAEAVELLAKMLPKFADEGVDSIYLVTGSGHHSKGPTGNSRLLPAVEHFLAGEGYHYTPVAD-GAGFVGML 581
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: A0A0W8DKZ9_PHYNI (Membrane metallo-endopeptidase 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKZ9_PHYNI)

HSP 1 Score: 80.1 bits (196), Expect = 8.100e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAV 255
            Q++  R +DLHGLHV+EAV+ L   +  LA  GV S+ ++TG+GHHSKGP    RL+PAVE F    G+  T + D + G VG +
Sbjct:  253 QLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGML 336
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: K3WV24_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV24_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 1.810e-12
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAV 255
            Q++  + +DLHGLHV+EAV+ L   +  LA  G+ ++ ++TG+GHHSKGP    RL+PA+E F    G+  + +PD   G+VG +
Sbjct:  526 QLYSEQLMDLHGLHVAEAVEFLTRMLPKLADEGLETIYLVTGSGHHSKGPQGNARLLPAIEQFLAAEGYQFSSVPD-GRGYVGML 609
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: A0A8K1CIW3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIW3_PYTOL)

HSP 1 Score: 80.1 bits (196), Expect = 2.060e-12
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAVDI 261
            Q++    +DLHGLHV+EAV+ L   +  LA  G+ S+ ++TG+GHHSKGPT   RL+PAVE F    G+  + + DR  G+VG + +
Sbjct:  438 QLYTDHLMDLHGLHVAEAVEFLAQMLPQLADDGLESIYLVTGSGHHSKGPTGNARLLPAVEQFLTAEGYRFSPVADRR-GYVGMLMV 523
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: A0A0W8C524_PHYNI (NEDD4-binding protein 2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C524_PHYNI)

HSP 1 Score: 80.1 bits (196), Expect = 2.250e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAV 255
            Q++  R +DLHGLHV+EAV+ L   +  LA  GV S+ ++TG+GHHSKGP    RL+PAVE F    G+  T + D + G VG +
Sbjct:  483 QLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGML 566
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BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Match: D0MT46_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT46_PHYIT)

HSP 1 Score: 80.1 bits (196), Expect = 2.340e-12
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 QVFQRRTIDLHGLHVSEAVDVLDAEMAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIPDRSTGHVGAV 255
            Q++  R +DLHGLHV+EAV+ L   +  LA  GV S+ ++TG+GHHSKGP    RL+PAVE F    G+  T + D S G VG +
Sbjct:  507 QLYMDRMMDLHGLHVAEAVEFLAQMLPKLADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADGS-GFVGML 590
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5456.13712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G092_ECTSI7.330e-4071.43Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JKG2_9PHAE1.840e-3571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0WYU9_9STRA9.120e-1648.86Uncharacterized protein AlNc14C400G11359 n=1 Tax=A... [more]
A0A024GR71_9STRA1.940e-1447.73Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A484DXY4_BRELC4.170e-1347.06Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0W8DKZ9_PHYNI8.100e-1347.06Membrane metallo-endopeptidase 1 n=1 Tax=Phytophth... [more]
K3WV24_GLOUD1.810e-1242.35Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CIW3_PYTOL2.060e-1244.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0W8C524_PHYNI2.250e-1247.06NEDD4-binding protein 2 n=7 Tax=Phytophthora TaxID... [more]
D0MT46_PHYIT2.340e-1248.24Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5456contigL-elsbetiae_contig5456:683..2633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog653948.CCA26658
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_000370.1
Exons2
Model size1370
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5456.13712.1prot_L-elsbetiae_contig5456.13712.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5456 758..1641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.8641272-UTR-L-elsbetiae_contig5456:682..7571622816571.8641272-UTR-L-elsbetiae_contig5456:682..757Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5456 683..757 +
1691683655.7571301-UTR-L-elsbetiae_contig5456:682..7571691683655.7571301-UTR-L-elsbetiae_contig5456:682..757Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5456 683..757 +
1622816571.9050624-UTR-L-elsbetiae_contig5456:1641..26331622816571.9050624-UTR-L-elsbetiae_contig5456:1641..2633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5456 1642..2633 +
1691683655.788927-UTR-L-elsbetiae_contig5456:1641..26331691683655.788927-UTR-L-elsbetiae_contig5456:1641..2633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5456 1642..2633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.8786902-CDS-L-elsbetiae_contig5456:757..8411622816571.8786902-CDS-L-elsbetiae_contig5456:757..841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5456 758..841 +
1691683655.76862-CDS-L-elsbetiae_contig5456:757..8411691683655.76862-CDS-L-elsbetiae_contig5456:757..841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5456 758..841 +
1622816571.8921328-CDS-L-elsbetiae_contig5456:1422..16411622816571.8921328-CDS-L-elsbetiae_contig5456:1422..1641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5456 1423..1641 +
1691683655.7790823-CDS-L-elsbetiae_contig5456:1422..16411691683655.7790823-CDS-L-elsbetiae_contig5456:1422..1641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5456 1423..1641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5456.13712.1

>prot_L-elsbetiae_contig5456.13712.1 ID=prot_L-elsbetiae_contig5456.13712.1|Name=mRNA_L-elsbetiae_contig5456.13712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MAGLAGRGVTSVRVLTGTGHHSKGPTNKTRLIPAVEYFCHTRGFPLTKIP
DRSTGHVGAVDIHFAGLLEHDQGTGGYTDDYVRNGGGNSAAAAAYHNIYV
*
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mRNA from alignment at L-elsbetiae_contig5456:683..2633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5456.13712.1 ID=mRNA_L-elsbetiae_contig5456.13712.1|Name=mRNA_L-elsbetiae_contig5456.13712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1951bp|location=Sequence derived from alignment at L-elsbetiae_contig5456:683..2633+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGTTTCAACGGAGAACGATCGACCTGCACGGGCTGCATGTGTCTGA
GGCCGTGGACGTCTTGGACGCGGAGATGGCGGGCTTAGCAGGCAGGGGTG
TGACCAGCGTGAGAGTCTTGACCGGTACGGGGCACCACAGCAAGGGTCCT
ACCAACAAGGTGATTACAAGTTACAAGTGTACCAATGTACCCCCTACAAA
GCTACATGTGTTTATTCAAGAACTTTTGGCGGAGGGCTTGCTTGCTATCC
TGGCTCCAACGCCCAACGGGTAAGTATCCGCTGCACTTGTTGTTGGTGGT
GATGCCTTTGTTGTTGTCAATCTACCACAACCCATATATAGGGCGCTTGA
GTTTTTTGTGGAGCCCTTGGGATCGTTTGAGAGGGGCATAGCAGGGGGGT
ACGAATCGTGGGACGTACGTAGATGCTTGCCATGCCTGCGTTCAGGCCTG
CTCCGTTCAGAAATAAGAGGCGTAATGTGTGTAGGTATCGTTGGGGGTTA
CGCGTGTCATGAAATGGTGTGGGTGTGGAAGGGCCGAACCCCCTCCGGAT
AACGTGTTACGTCACACTCAACATCAAGGTAGTCTGAGCCAAGTTTCCCT
CTCTTGGCCTCCCGCAAAATGTTGCCGCCCCTAAATACAACACATAAAAC
ATCCCGTAAATAAAATCGCCGACCGAAGGACAAACACGGTGCCCCCTCTC
TCCCTCCCTCCCCCCGGCCGCGATATTTACCCGTCAATAGACCCGCCTTA
TACCGGCCGTGGAGTACTTTTGCCATACACGGGGCTTCCCCCTGACGAAA
ATACCGGACCGAAGCACGGGACACGTCGGAGCGGTAGACATTCACTTCGC
GGGACTGTTGGAACACGACCAAGGAACCGGGGGTTACACCGACGACTACG
TGCGGAATGGCGGCGGAAATAGCGCAGCTGCCGCCGCGTATCATAATATA
TATGTGTGAAAACTACGGGAGATAGCCAGCGCACAAGCGCCGGAGGGGGG
ATCCGGTGGCCGGAGAGAGACGTGTATCCCGGCTTTGATTGCGTCATCGC
ATCACGGGGGGTGTATATCTACATATTTAGTGAACAAACGCGTGTTGCTG
GACAATCGACGTTTATTCCCGAGTTGGTGGATGTCAGGATGAGCGAGATA
TTGGTTTGATCATCGATCATAGATGAAGGATGGGATGTATGTGCTTGCTT
CTTCATCAGTCAGGCAGTCCAGCGCCAGAGCTTGTGTAATACCATGTGTA
TTAGTTGTTCGTGGTTTTGGAGCGGGAGTCGACCAGGCCAGGAGCACGGG
CAGGAGAGGAGCATGGTGTGGATTTGTCTCATGGCGGCAAACAAAAAACT
TGGTTGTGTTCACATGGCGAGGAATGGTGGAAGGGCGGGGTGCTGCGGAA
AAATCACGGCTAGTCGAGACGCTATAGGGCGGGTGGCAGGGCCCTTGTAT
TTTTGGTTTTTATGACCGTCTTGTTCTGTTTTGAATCTCATGTTGTGTTG
GTTGAAGCATGGGGGTCGACCGTCGTGTATTTCGGAAGCTGGTTGTAGGA
AGTCGTAACGGCGACGGTTTCATTTTGAAAGAAAAACAGTCATTTAATCA
AGAATGGAACCTAACCCACATTGAGACGGGACCCCGTGAAATTCAATCGG
TATTCCATTTAGTGACGGAACACTGGGCCGGCCGAGTAGAAAAACACCTA
AAATATAAGAAGAAAATTCACCATCTCCCCTGCATCTCCGTCAGGTCAGA
CAACATGTAATTCCGGAGAGAAACCCTCCGTAATGTCGTATGTTGTCAAC
TACTCCTTCCTATGCTTTGTTTTTTTCTCGGAGAGTGCGCCGACAGTAAG
TAGTAGTCGCACCCACTGCCACACTGCTGTAATGTATGAGTCCCCGTACA
CGTAGCCCACCACTGGTGCGATATGTATGCTAGAGAATCAACCAAGCACA
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5456:683..2633+

>mRNA_L-elsbetiae_contig5456.13712.1 ID=mRNA_L-elsbetiae_contig5456.13712.1|Name=mRNA_L-elsbetiae_contig5456.13712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig5456:683..2633+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGCTTAGCAGGCAGGGGTGTGACCAGCGTGAGAGTCTTGACCGG
TACGGGGCACCACAGCAAGGGTCCTACCAACAAGATGGCGGGCTTAGCAG
GCAGGGGTGTGACCAGCGTGAGAGTCTTGACCGGTACGGGGCACCACAGC
AAGGGTCCTACCAACAAGACCCGCCTTATACCGGCCGTGGAGTACTTTTG
CCATACACGGGGCTTCCCCCTGACGAAAATACCGGACCGAAGCACGGGAC
ACGTCGGAGCGGTAGACATTCACTTCGCGGGACTGTTGGAACACGACCAA
GGAACCGGGGGTTACACCGACGACTACGTGCGGAATGGCGGCGGAAATAG
CGCAGCTGCCGCCGCGTATCATAATATATATGTGTGAACCCGCCTTATAC
CGGCCGTGGAGTACTTTTGCCATACACGGGGCTTCCCCCTGACGAAAATA
CCGGACCGAAGCACGGGACACGTCGGAGCGGTAGACATTCACTTCGCGGG
ACTGTTGGAACACGACCAAGGAACCGGGGGTTACACCGACGACTACGTGC
GGAATGGCGGCGGAAATAGCGCAGCTGCCGCCGCGTATCATAATATATAT
GTGTGA
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