prot_L-elsbetiae_contig5453.13709.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5453.13709.1
Unique Name	prot_L-elsbetiae_contig5453.13709.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	229

Homology

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BLAST of mRNA_L-elsbetiae_contig5453.13709.1 vs. uniprot
Match: A0A6H5L1G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 9.630e-41
Identity = 94/159 (59.12%), Postives = 107/159 (67.30%), Query Frame = 0

Query:   77 MNAMRRLIFVALALALTTCNAFYPSSATSFVRSAT--AASARHQATQTDHVPPSSSRAFSRAGAL-----GVSMTAEGPRSSRNVQRVAAVAXXXXXXXXXXSAVPAHAENFAQYFAQGIVGAINGPGILAVPIVLGFGLASAIAFFIYFFSQPREYDE 228
            M A  RL+ +ALA  L+ C AF+ S  TSF R     AAS R  ATQ+ HV P + RA+   GA      G SM A  P SS++ QRVAAVA          SAVPAHA+NFA+YFA GIVG INGPGILA+PIVLG GLASAIAFFIYFFSQPREYD+
Sbjct:    2 MGATWRLVLLALAFVLSACTAFHVSP-TSFGRQPVGRAASLRPSATQSQHVAPFT-RAYRHTGASRTSTRGPSMAAGEPLSSKSAQRVAAVAAVASAATLTGSAVPAHADNFAEYFANGIVGTINGPGILAIPIVLGIGLASAIAFFIYFFSQPREYDD 158

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5453.13709.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5453.13709.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5L1G3_9PHAE	9.630e-41	59.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 79..99
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..78
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 100..156
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 157..178
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 221..228
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 198..220
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 179..197
None	No IPR available	TMHMM	TMhelix		coord: 198..220
None	No IPR available	TMHMM	TMhelix		coord: 83..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5453	contig	L-elsbetiae_contig5453:2942..4226 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5453.13709.1	mRNA_L-elsbetiae_contig5453.13709.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5453 2942..4226 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5453.13709.1 ID=prot_L-elsbetiae_contig5453.13709.1|Name=mRNA_L-elsbetiae_contig5453.13709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
FVRTCSLGNALLAWLKHNNGSCRPVVFLCLCAAYCKPRQKSARDHSVFRN
PIQPLLSSGPPRSEQAQERPVHCPVTMNAMRRLIFVALALALTTCNAFYP
SSATSFVRSATAASARHQATQTDHVPPSSSRAFSRAGALGVSMTAEGPRS
SRNVQRVAAVAAATSVATLTSSAVPAHAENFAQYFAQGIVGAINGPGILA
VPIVLGFGLASAIAFFIYFFSQPREYDE*