mRNA_L-elsbetiae_contig5451.13706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 119 bits (297), Expect = 1.530e-28 Identity = 80/170 (47.06%), Postives = 103/170 (60.59%), Query Frame = 1 Query: 16 SGATLLVCSIQAWRSCSPRITRLPVGVGADTSTAVRLTNEGGLVIFNNTLLALADLYFSAKKINGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWASDARSVTHAAAEGTSRAAKATLNPLISMLPVLRRRTGRRRV----LLR--PCSGTR*SLDRDWLARRGSGSIS 507 SG T L CSI+ S +PRI RL V GADT++ VR+TN G V +N+T LA+ K ++GK ATE+QLH LQA+RRLL+RV+AVHAVSWLW SDA S+ HA + PL LP+L+RR V LLR P S R S D L++ +G++S Sbjct: 61 SGMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRP--PLSLTLPILKRRAKTCHVFVATLLRSSPISSGRGSRRAD-LSKEKAGTVS 227
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.170e-21 Identity = 66/119 (55.46%), Postives = 77/119 (64.71%), Query Frame = 1 Query: 16 SGATLLVCSIQAWRSCSPRITRLPVGVGADTSTAVRLTNEGGLVIFNNTLLALADLYFSAKKI-NGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWASDARSVTHAAAEGTSRAAKAT 369 SG T LV SIQ S +PRI RL + GADT++ +R TN G V N T LAL Y K + NG+ ATE+ L L+A+RRLL+R EAVHAVSWLW SDA V HAA E RAA AT Sbjct: 269 SGLTALVFSIQRCLSQTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAA-EKWPRAAFAT 386
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.300e-18 Identity = 65/130 (50.00%), Postives = 76/130 (58.46%), Query Frame = 1 Query: 61 CSPRITRLPVGVGADTSTAVRLTNEGGLVIFNNTLLALADLYFSAKKINGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWASDAR-SVTHAAAEGTSRAAKATLNPLISMLPVLRRRTGRRRVLLRPCS 447 C PRI RL V GADT +AVR T GLV F++T L + GKD E+QL L+A+RRLL+RVEAVHA SW+W S A SV AAE A+ L S L +LRRR RR VLLR S Sbjct: 242 CFPRIVRLLVDSGADTESAVRYTYRDGLVGFSDTPLCRTIRILRDVETEGKDDKEEQLGRLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAE-VKAGAETEPTRLTSTLQILRRRATRRGVLLRALS 370
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 9.330e-18 Identity = 62/137 (45.26%), Postives = 83/137 (60.58%), Query Frame = 1 Query: 16 SGATLLVCSIQAWRSCSPRITRLPVGVGADTSTAVRLTNEGGLVIFNNTLLALADLYFSAKKI-NGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWASDARSVTHAAAEGTSRAAKATLNPLISMLPVLRRRTGRR 423 +G T LV Q S +PRI R+ V GADT++ V++ N G V+FN+T LA L K + +GK AT++ L L+A+ RLL+RV+AVHAVSWLW S A + A T + L L MLP+L+RRT RR Sbjct: 381 NGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRA----TETDPEPPLPALKLMLPILKRRTKRR 513
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.510e-17 Identity = 58/145 (40.00%), Postives = 91/145 (62.76%), Query Frame = 1 Query: 10 RPSGATLLVCSI-QAWRSCSPRITRLPVGVGADTSTAVRLTNEGGLVIFNNTLLALADLYFSAKKINGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWASDA-RSVTHAAAEGTSRA-AKATLNPLISMLPVLRRRTGRRRVLL 435 +P G T +VC I +A RS SPR+ RL + GADT++ VR+TN+ G+ +F T LA ++ G D+T+ + SL+A+RR+L+++EA+ AVSW W SDA S+ A +G RA ++ T++ + + RR+ RRVL+ Sbjct: 445 QPDGRTPVVCRIGRALRSGSPRVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARGIDSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDALSSIERAVQDGRPRAKSRLTVDTPLGLTLPRRRKARARRVLV 589
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.040e-16 Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 19 GATLLVCSIQAWRSCSPRITRLPVGVGADTSTAVRLTNE--GGLVIFNNTLLALADLYFSAKKINGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWASDARSVTHAAAEGTSRAAKATLNPLISMLPVLRRRTGRR 423 G T L+ IQ +R PR+ RL V GADT++ V + N+ G V L + + K + A+ +QLH L+A+RRLL+RVEAVHAVSWLW SD ++T AAA GT R + + ML RR GR+ Sbjct: 289 GVTPLLWGIQHYR---PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRK 422
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 3.010e-16 Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 1 Query: 19 GATLLVCSIQAWRS--CSPRITRLPVGVGADTSTAVRLTNEGGLVIFNNTLLALADLYFSAKKINGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWASDARSVTHAAAEGTSRAAKATLNPLISMLPVLRRRTGRRRVL 432 G T L+ S + ++ C+PRITR V GADT++AV+L + N T L + + + AT++QL L+A RR+L+RV AVHAVSW+W SDA + A + R AK + L ++LPVLRRR GRR +L Sbjct: 258 GLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPA--NSPRTAKHSPTQLTTVLPVLRRRAGRRALL 395
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: D7FSU4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU4_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.260e-15 Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 1 Query: 61 CSPRITRLPVGVGADTSTAVRLTNEGGLVIFNNTLLALADLYFSAKKINGKDA---TEKQLHSLQAMRRLLMRVEAVHAVSWLWASDARSVTHAAAEGTSR--AAKATLNPLISMLPVLRRRTGRRRVLL 435 C PR+ +L V GADT++AV ++ G ++ L + + ++G+ TE+QL L+A+RRLL+RVEAVHAVSWLW++D ++TH+ A GT R A T PL+ M+ RRRT RR V L Sbjct: 163 CRPRVGQLLVEAGADTTSAVPVSKHFGKD-------SVTPLGLTMRLLDGRSTYPLTEEQLKKLKAIRRLLLRVEAVHAVSWLWSTDISTITHSTAHGTDRTIATSTTGTPLMLMM---RRRTKRREVPL 282
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 3.040e-15 Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 1 Query: 13 PSGATLLVCSIQ--AWRSCSPRITRLPVGVGADTSTAVRLTN-EGGLVIFNNTLLALADLYFSAKKINGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWAS-DARSVTHAAAEG-TSRAAKATLNPLISMLPVLRRRTGRRRVLLR 438 P G T ++C++ A R CSP+I RL V GA+T+ AV +T + T LA +++G+ AT++QL L+ R LL R EAVHAVSWLWAS + + AA + T A+ A PL +M P+LRR+ G R VLL+ Sbjct: 281 PYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLK 427
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.390e-15 Identity = 59/146 (40.41%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 1 DPLRPSGATLLVCSIQAWRSCSPRITRLPVGVGADTSTAVRLTNEGGLVIFNNTLLALADLYFSAKKINGKDATEKQLHSLQAMRRLLMRVEAVHAVSWLWASDARSVTHAAAEGTSR--AAKATLNPLISMLPVLRRRTGRRRVL 432 + L G T L+ IQ C PR+ +L V GADT++ V + N+ G F+ T L L + + K T ++ + L+ +RRLL+R EAVHAVSWLW SD ++THA A+GT R A P I ML + RR GR+ +L Sbjct: 283 NTLNGVGLTSLLDGIQR---CRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGR--SAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFI-MLMIGRRTRGRKGLL 422 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5451.13706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5451.13706.1 >prot_L-elsbetiae_contig5451.13706.1 ID=prot_L-elsbetiae_contig5451.13706.1|Name=mRNA_L-elsbetiae_contig5451.13706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp MRRLLMRVEAVHAVSWLWASDARSVTHAAAEGTSRAAKATLNPLISMLPVback to top mRNA from alignment at L-elsbetiae_contig5451:5186..6564+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5451.13706.1 ID=mRNA_L-elsbetiae_contig5451.13706.1|Name=mRNA_L-elsbetiae_contig5451.13706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1379bp|location=Sequence derived from alignment at L-elsbetiae_contig5451:5186..6564+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5451:5186..6564+ >mRNA_L-elsbetiae_contig5451.13706.1 ID=mRNA_L-elsbetiae_contig5451.13706.1|Name=mRNA_L-elsbetiae_contig5451.13706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig5451:5186..6564+ (Laminarionema elsbetiae ELsaHSoW15)back to top |