mRNA_L-elsbetiae_contig545.13702.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig545.13702.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI) HSP 1 Score: 640 bits (1650), Expect = 9.250e-222 Identity = 366/530 (69.06%), Postives = 415/530 (78.30%), Query Frame = 1
Query: 559 EGLVYSITTDTGVFNTGLNLNLCGMLSILGGPDVMTAAVRTVSLRFNTFNGQRDGLFSSVDITARFTLGGEVLIDTNVQVFSMPYFFDDSPWIVCRAVAMFAFALLLARYLVKDLKQALRELKDGRHIISISLRKIPLNTATVLNLVGDGVFMWNLVLWTTVAATASKFELIPTLSYNNAAEQVRAFSDDLALVALERWKRDAAAVAGSIFGLARLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVAVYSNLGWVIFGPSLSLFATWTMSFVTMTRIALGEFDNMYPLMVEVNDGAAFIIIATYQTLQGILLLNIVISILLDGFQMVHKRNSAIAADTLRQTVMTTLGRWRLRLLG---AVFHRAPLLPLSSSCRNGS----SPSPQVKNPAHGKLGSK--RQRSSFSS--AAGAGAGAVVA--GVPVAPPGVP----RSVAAMPPPAFTTKASVGTVKWKFDIKSQ---VARNGGLTRGQRLALSHRHYDVRAAVEVLRRSPLPESAVWRKMRQIVAARFVAVS 2088
+GLVYSITTD GVFN+GLN NLCGML+ILGGPDVMT AVR+VSLRFNT+NGQ DGLFS VDITA FTLGGEV + T+V+VFSMP+FF SP IV RA+AMFAF L+L Y+ KD+ +A RE++DGRH +S+SLR +P+ TAT LNLVGD VF+WNLVLW VA TA+KFELIPTLSYNNA+EQVRAFS++LALVALERWKRDAAAVAGSIFGL RLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVV VYSNL WVIFGPS LFATWT SFVTMTRIALGEFDN+YPLMVE++ AAF+II TYQTLQ ILLLNIVISILLD FQMV KRNS +AADTL QTVMTTLGRWR+RL A+ R P + SS R S + + VKNP H + G + RQR ++ A G A AV A GVPVAPPG+ R V +P + K K K++ + GGLTRGQRLA+SHRHYD+R AVEVLRRSPLPE+AVWRKMRQI+ AR VS
Sbjct: 24 QGLVYSITTDIGVFNSGLNFNLCGMLAILGGPDVMTDAVRSVSLRFNTYNGQCDGLFSFVDITALFTLGGEVKMVTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMSLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQVRAFSEELALVALERWKRDAAAVAGSIFGLTRLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLGRWRIRLTHVGFALVGRCPSVTRRSSPRGSSVGDDAGTTVVKNPMHDRHGGRKLRQRHQHTAPTAGGTSAAAVAAAAGVPVAPPGITGSSSRGVPLLP----------SSDKRKVSSKNRGGGATKRGGLTRGQRLAMSHRHYDLRTAVEVLRRSPLPEAAVWRKMRQIIGARLGWVS 543
BLAST of mRNA_L-elsbetiae_contig545.13702.1 vs. uniprot
Match: A0A6H5KPV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV8_9PHAE) HSP 1 Score: 165 bits (418), Expect = 5.610e-43 Identity = 118/256 (46.09%), Postives = 141/256 (55.08%), Query Frame = 1
Query: 1438 MVEVNDGAAFIIIATYQTLQGILLLNIVISILLDGFQMVHKRNSAIAADTLRQTVMTTLGRWRLRLL-----------------------------------GAVFHRAPLLPLSSSCRNGSSPSPQVKNPAHGKLGSKRQRSSFSSAAGAGAGAV------VAGVPVAPPGVPRSVAAMPPPAFTTKASVGTVKWKFDIKSQ---VARNGGLTRGQRLALSHRHYDVRAAVEVLRRSPLPESAVWRKMRQIVAAR 2073
MV+++ GAAF+II TYQTLQ ILLLNIVISILLD FQMV R+S +AADTL QTVMTTLGRWR+RL A+ HR SS R + + V+NP H + G + R A V GVPVAPPG+ S + P T+ K K K++ R GGLT GQRLA+SHRHY++ AAVEVLRRSPLPE+AVWRKMRQI+ AR
Sbjct: 1 MVDIDGGAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQTRDSVVAADTLWQTVMTTLGRWRIRLTHMGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVHRCSSGTRRSSDRGDDAGTTVVRNPMHDRHGGWKLRRRHQRTAPTXXXXXXXXXXXVTGVPVAPPGITGSSSRGAPSLPTSD------KRKVSSKNRGGGATRRGGLTGGQRLAMSHRHYELHAAVEVLRRSPLPEAAVWRKMRQIIGAR 250
BLAST of mRNA_L-elsbetiae_contig545.13702.1 vs. uniprot
Match: A0A1Q9DKM7_SYMMI (Polycystin-2 n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DKM7_SYMMI) HSP 1 Score: 67.0 bits (162), Expect = 1.170e-7 Identity = 65/206 (31.55%), Postives = 103/206 (50.00%), Query Frame = 1
Query: 1042 VAATASKFELIPTLSYNNAAEQVRAFSDDLALVALERWKRDAAAVAGSIFGLARLF----IMLR----FH--PRLSLVTDVLTASAVHLVHFFIMFFMVVAVYSNLGWVIFGPSLSLFATWTMSFVTMTRIALGEFDNMYPLMVEVNDGAAFIIIATYQTLQGILLLNIVISILLDGFQMVHKRNSAIAADTLRQTVMTTLGRWRL 1629
VAAT+S+ E + N + + DL A E + A + F + LF +MLR FH PRL++VT + ++ L+HFFI+ V + G+++FG + F+TW +T R LGE+D + M V A I + + L +LLLN+V++IL+D +Q+V + S + T+ Q + L R RL
Sbjct: 440 VAATSSQLENVLQPDVQNQTREELSARSDLVFQATE-----SLVSAEADFRITLLFFPMLVMLRLFKSFHAQPRLAIVTKTIITASQDLLHFFIVLLSVYTCMAVFGYLLFGQDVENFSTWDRVCITCFRALLGEWD--WEEMETVGRVLAAIWLWCFVVLVVLLLLNMVLAILMDAYQVVKSKASVMV--TVPQQISEMLRRRRL 636
BLAST of mRNA_L-elsbetiae_contig545.13702.1 vs. uniprot
Match: A0A812IFP8_9DINO (Rsph3a protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IFP8_9DINO) HSP 1 Score: 63.5 bits (153), Expect = 1.180e-6 Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 1
Query: 1201 RLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVAVYSNLGWVIFGPSLSLFATWTMSFVTMTRIALGEFDNMYPLMVEVNDGAAFIIIATYQTLQGILLLNIVISILLDGFQMVHKRNSAIAADTLRQTVMTTLGRWRL 1629
RLF PRL++VT + ++ L+HFFI+ V + G+++FG + F+TW +T R LGE+D + M V A I + + L +LLLN+V++IL+D +Q+V + S + T+ Q + L R RL
Sbjct: 6 RLFKSFHAQPRLAIVTKTIITASQDLLHFFIVLLSVYTCMAVFGYLLFGQDVEDFSTWDRVCITCFRALLGEWD--WEEMETVGRVLAAIWLWCFVVLVVLLLLNMVLAILMDAYQVVKSKASVMV--TVPQQISEMLRRRRL 144
BLAST of mRNA_L-elsbetiae_contig545.13702.1 vs. uniprot
Match: A0A7S0U3P7_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U3P7_HEMAN) HSP 1 Score: 59.7 bits (143), Expect = 1.970e-5 Identity = 90/337 (26.71%), Postives = 158/337 (46.88%), Query Frame = 1
Query: 634 LSILGGPDVMTAAVRTVSLRFNTFNGQRDGLFSSVDITARFTLGGEVLIDTNVQVFSMPYFFDDSPWIVCRAVAMF-AFALLLARYLVKDLKQALRELKDGRHIISISLRKIPLNTATVLNLVGDGVFMW-NLVLWTTVAATASKFELIPTLSYNNAAEQV--RAFSDDLALVALER-------WKRDAAA-VAGSIFGL-ARLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVAVYSNLGWVIFGPSLSLFATWTMS-----FVTMTRIALGEFDNMYPLMVEVNDGAAFIIIATYQTLQGILLLNIVISILLDGFQMVHKRNSAIAADTL 1590
+S L +T ++S+ TFN Q F+ T F GG + + V FSM D+ IV + F F +L+A +LK+ K+G+ + ++ L+ AT+ + G + + + ++ + A + +L L A +V +++A + L +D+ A VA ++ L AR F ML F R+ LVT SA + HF I+F VV +Y+ L +++G + F T MS F T+T I + +++ M + + D A I T+ L ++LLNI ++IL++G+ +V + +A ++TL
Sbjct: 513 VSFLQEGKFLTNQTESLSVEIGTFNPQHRA-FAWSKATFTFGTGGLIEAEYLVDSFSMADLEADNVEIVLFFIVCFLCFGMLIA-----ELKEMWGCWKEGKLLSYLTDIWNLLDMATICFVPGSLLLILVDARMFISTLELAERGDLPRVLRNPGAVARVFQTVLEEEMAFLDLRHRIQMYIAQSQDSRAWVAVNVLLLMARFFKMLHFQGRMGLVTRTFANSATDIAHFTIIFAFVVVMYAILAQLMYGTQMPEFRTLGMSMMMLVFTTLT-IGIEDYNRMLTMSPHM-DYIATIFWLTFMFLSTVVLLNIFLAILVEGYAVV--KETATNSETL 839
BLAST of mRNA_L-elsbetiae_contig545.13702.1 vs. uniprot
Match: A0A6U4MJF6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MJF6_HEMAN) HSP 1 Score: 57.4 bits (137), Expect = 9.530e-5 Identity = 41/140 (29.29%), Postives = 76/140 (54.29%), Query Frame = 1
Query: 1198 ARLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVAVYSNLGWVIFGPSLSLFATWTMSFVTMTRIALGEFDNMYPLMVEVNDGA-AFIIIATYQTLQGILLLNIVISILLDGFQMVHKRNSAIAADTLRQTVMTTL 1614
AR F +L F R+ L+T + + ++HF ++FF+V+ Y +G ++FG LS + T + +T+ + L ++ Y M++ N+ I ++ L I LLNI ++IL+D F V + +S ++TL ++ L
Sbjct: 498 ARFFKILHFQGRMGLITRTFSTALQDIIHFGMIFFLVIFAYGVMGVLLFGHQLSEYRTMGTAMMTLIQTTLAISNDDYARMLDSNNNIMTTIFYLSFLFLSTITLLNIFLAILIDAFSTVKESSSH--SETLMSGLLEVL 635 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig545.13702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig545.13702.1 >prot_L-elsbetiae_contig545.13702.1 ID=prot_L-elsbetiae_contig545.13702.1|Name=mRNA_L-elsbetiae_contig545.13702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=696bp SCPLCYGAERASVVGEAGSLGDDFCGVCTGLEFCFQGRCADYLDLIPNIGback to top mRNA from alignment at L-elsbetiae_contig545:25271..36821+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig545.13702.1 ID=mRNA_L-elsbetiae_contig545.13702.1|Name=mRNA_L-elsbetiae_contig545.13702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11551bp|location=Sequence derived from alignment at L-elsbetiae_contig545:25271..36821+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig545:25271..36821+ >mRNA_L-elsbetiae_contig545.13702.1 ID=mRNA_L-elsbetiae_contig545.13702.1|Name=mRNA_L-elsbetiae_contig545.13702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4176bp|location=Sequence derived from alignment at L-elsbetiae_contig545:25271..36821+ (Laminarionema elsbetiae ELsaHSoW15)back to top |