mRNA_L-elsbetiae_contig5445.13693.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5445.13693.1
Unique NamemRNA_L-elsbetiae_contig5445.13693.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5445.13693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5445contigL-elsbetiae_contig5445:2618..3194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.431115-UTR-L-elsbetiae_contig5445:2617..27261622816570.431115-UTR-L-elsbetiae_contig5445:2617..2726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5445 2618..2726 +
1691683654.8097372-UTR-L-elsbetiae_contig5445:2617..27261691683654.8097372-UTR-L-elsbetiae_contig5445:2617..2726Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5445 2618..2726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.4417295-CDS-L-elsbetiae_contig5445:2726..31941622816570.4417295-CDS-L-elsbetiae_contig5445:2726..3194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5445 2727..3194 +
1691683654.8212209-CDS-L-elsbetiae_contig5445:2726..31941691683654.8212209-CDS-L-elsbetiae_contig5445:2726..3194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5445 2727..3194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5445.13693.1prot_L-elsbetiae_contig5445.13693.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5445 2727..3194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5445.13693.1

>prot_L-elsbetiae_contig5445.13693.1 ID=prot_L-elsbetiae_contig5445.13693.1|Name=mRNA_L-elsbetiae_contig5445.13693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MSFWEEVEDPLLRRMSSSGEEKCGWMRTWRLLSEVVHTVAGKCLEARGDS
FVSRGCGTNPLLSCGWGREITARCRALGLPTQRPTWCAASKFAGTLVPAL
VNVWVSVRKKKKAGYSDDTHAPIPCTVCMRRCRSSLWHFLIWHKAQIICT
HLPIYS
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mRNA from alignment at L-elsbetiae_contig5445:2618..3194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5445.13693.1 ID=mRNA_L-elsbetiae_contig5445.13693.1|Name=mRNA_L-elsbetiae_contig5445.13693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=577bp|location=Sequence derived from alignment at L-elsbetiae_contig5445:2618..3194+ (Laminarionema elsbetiae ELsaHSoW15)
TTGACTCCGGCTGGGCTTATGAACGCGAGAAAGGTTGCTGCTGCTAAGAC
TTGTGTGTTGCAGTTTAGTTTGGCGGCTTTTAGAGGGGAAACAAGGGGGG
AAACAGGGCATGAGTTTTTGGGAGGAGGTCGAGGACCCCCTACTTCGCCG
CATGTCTTCATCGGGTGAAGAGAAGTGTGGTTGGATGCGCACTTGGAGGC
TGCTTTCAGAGGTCGTACACACTGTAGCTGGAAAATGTCTCGAAGCTCGG
GGGGATAGTTTTGTGAGCCGGGGTTGTGGGACAAACCCTCTCTTGAGTTG
CGGTTGGGGACGCGAGATAACCGCTCGCTGCCGGGCGTTAGGTCTGCCTA
CGCAGCGACCGACATGGTGCGCTGCTTCTAAATTTGCTGGGACCCTTGTC
CCAGCGCTGGTAAACGTGTGGGTATCGGTAAGAAAGAAAAAAAAGGCAGG
GTACAGCGACGACACGCACGCGCCGATTCCGTGTACTGTATGCATGCGTC
GTTGCAGATCCTCTCTCTGGCACTTTTTAATTTGGCACAAAGCTCAAATA
ATCTGTACCCATCTACCCATCTACTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5445:2618..3194+

>mRNA_L-elsbetiae_contig5445.13693.1 ID=mRNA_L-elsbetiae_contig5445.13693.1|Name=mRNA_L-elsbetiae_contig5445.13693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig5445:2618..3194+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTTTTTGGGAGGAGGTCGAGGACCCCCTACTTCGCCGCATGTCTTC
ATCGGGTGAAGAGAAGTGTGGTTGGATGCGCACTTGGAGGCTGCTTTCAG
AGGTCGTACACACTGTAGCTGGAAAATGTCTCGAAGCTCGGGGGGATAGT
TTTGTGAGCCGGGGTTGTGGGACAAACCCTCTCTTGAGTTGCGGTTGGGG
ACGCGAGATAACCGCTCGCTGCCGGGCGTTAGGTCTGCCTACGCAGCGAC
CGACATGGTGCGCTGCTTCTAAATTTGCTGGGACCCTTGTCCCAGCGCTG
GTAAACGTGTGGGTATCGGTAAGAAAGAAAAAAAAGGCAGGGTACAGCGA
CGACACGCACGCGCCGATTCCGTGTACTGTATGCATGCGTCGTTGCAGAT
CCTCTCTCTGGCACTTTTTAATTTGGCACAAAGCTCAAATAATCTGTACC
CATCTACCCATCTACTCTATGAGTTTTTGGGAGGAGGTCGAGGACCCCCT
ACTTCGCCGCATGTCTTCATCGGGTGAAGAGAAGTGTGGTTGGATGCGCA
CTTGGAGGCTGCTTTCAGAGGTCGTACACACTGTAGCTGGAAAATGTCTC
GAAGCTCGGGGGGATAGTTTTGTGAGCCGGGGTTGTGGGACAAACCCTCT
CTTGAGTTGCGGTTGGGGACGCGAGATAACCGCTCGCTGCCGGGCGTTAG
GTCTGCCTACGCAGCGACCGACATGGTGCGCTGCTTCTAAATTTGCTGGG
ACCCTTGTCCCAGCGCTGGTAAACGTGTGGGTATCGGTAAGAAAGAAAAA
AAAGGCAGGGTACAGCGACGACACGCACGCGCCGATTCCGTGTACTGTAT
GCATGCGTCGTTGCAGATCCTCTCTCTGGCACTTTTTAATTTGGCACAAA
GCTCAAATAATCTGTACCCATCTACCCATCTACTCT
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