prot_L-elsbetiae_contig5432.13672.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5432.13672.1
Unique Name	prot_L-elsbetiae_contig5432.13672.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	255

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig5432.13672.1 vs. uniprot
Match: D7FXB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB3_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.560e-65
Identity = 130/260 (50.00%), Postives = 162/260 (62.31%), Query Frame = 0

Query:    1 MGRASPHKVSIFVDAVSSAIGPAIIESAKG---AHATNVPGAVGAAAXXXXXXXXXXTARERNNRRRRDGDMPVRDVCTNNMGL-NQRQWEQXXXXXXXXXXXXXXXXXXXXRGREYGVSKQSVAALSVTDAGGNGIGGXXGDGT---DESSVRNGLAVAEARRKMLDPPKVDMATIATIQAAFARNFPFQKHGEKFADLDVRSSLKNLITSEGPGRLIGLLSHYLFWIILLPFAAAHKSRDDCLLLETDTRLLLKKRQK 253
            MGRASPHKVS+FVDAVSSAIGPA++E+  G   AH  +  G   A            TAR+RN  RR++GD+ +R+  T+   L N R +E+                     G    VSK++  AL      G  + G  G G    DE    + +  A+ RRKMLDPPKVDM+ IAT+QAAFARNF F KHGEKF D+ VRSSLKN+I SEGPGRLIGLLSHYL+WI+LLPF  AHK RDDC+LL+ D RL ++K++K
Sbjct:  105 MGRASPHKVSVFVDAVSSAIGPAMMETTTGKDGAHRADTAGGAAATMPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSRGLLTNNRNFEKRAQRERGHQHGRQANTGASGDG----VSKRNPVALQQKGGVGGDVAGSDGGGGGTFDEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNFSFHKHGEKFTDISVRSSLKNIIMSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSMRKQKK 360

[Close]

BLAST of mRNA_L-elsbetiae_contig5432.13672.1 vs. uniprot
Match: A0A6H5K524_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K524_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.170e-57
Identity = 131/272 (48.16%), Postives = 164/272 (60.29%), Query Frame = 0

Query:    1 MGRASPHKVSIFVDAVSSAIGPAIIESAKG---AHATNVPGAVGAAAXXXXXXXXXXTARERNNRRRRDGDMPVRD------VCTNNMGLNQRQWEQXXXXXXXXXXXXXXXXXXXXRGREY-------GVSKQSVAALSVTDAGGN---GIGGXXGDGT-DESSVRNGLAVAEARRKMLDPPKVDMATIATIQAAFARNFPFQKHGEKFADLDVRSSLKNLITSEGPGRLIGLLSHYLFWIILLPFAAAHKSRDDCLLLETDTRLLLKKRQ 252
            MG+ASPHKVS+FVDAVSSAI P ++E+  G   AH  +  G   A            TAR+RN  RR++GD+ +R+      V TNN   ++R   +                    RGR+        GVSK   AAL  +   G     +G   G GT DE    + +  A+ RRKMLDPPKV M+ IAT+QAAFARNF F KHGEKF D+ VRSSLKN+ITSEGPGRLIGLLSHYL+WI+LLPF  AHK RDDC+LL+ D RL ++K++
Sbjct:  188 MGKASPHKVSVFVDAVSSAILPVMMETTTGKDGAHRADTAGGAAATLPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSCVVLTNNRNFDKRTQRERGHQ----------------RGRQASTGASGDGVSKIFPAALRQSGGVGGDVVAVGDGGGGGTFDEQVPCDAVEFAQERRKMLDPPKVGMSAIATVQAAFARNFAFHKHGEKFKDISVRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSMRKQK 443

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5432.13672.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5432.13672.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FXB3_ECTSI	1.560e-65	50.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K524_9PHAE	1.170e-57	48.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 83..103
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..210
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 231..254
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 211..230

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5432	contig	L-elsbetiae_contig5432:7456..9839 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5432.13672.1	mRNA_L-elsbetiae_contig5432.13672.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5432 7456..9839 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5432.13672.1 ID=prot_L-elsbetiae_contig5432.13672.1|Name=mRNA_L-elsbetiae_contig5432.13672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MGRASPHKVSIFVDAVSSAIGPAIIESAKGAHATNVPGAVGAAAAAVTQT
TGTVTARERNNRRRRDGDMPVRDVCTNNMGLNQRQWEQQQQQQQQQQQQQ
QQQQQHGGRGREYGVSKQSVAALSVTDAGGNGIGGGNGDGTDESSVRNGL
AVAEARRKMLDPPKVDMATIATIQAAFARNFPFQKHGEKFADLDVRSSLK
NLITSEGPGRLIGLLSHYLFWIILLPFAAAHKSRDDCLLLETDTRLLLKK
RQKV*