mRNA_L-elsbetiae_contig5430.13670.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5430.13670.1
Unique NamemRNA_L-elsbetiae_contig5430.13670.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5430.13670.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 9.750e-57
Identity = 131/211 (62.09%), Postives = 151/211 (71.56%), Query Frame = 2 
Query:    2 AMDSDSNN--PWTWEDGVREAIERLDFFSSLKNEAGAEE---GGSFSSVVVEEAADVAFQGYKALVAGLPDGSFKSADDLWRGVLVLTLADDGVGEAVARGAIPTAADDDTAANDREMEAVWKRPTVLHLLLRAIQKDRRLRRGVPWVGGRGXXXXXXXXXXXXXXXXXXRKIDLTNDSLSRIVRELMPAAADKNGATCEAWIAAIRKCPW 619
            AMD+  N   PW W+D + E+  +L   +SL     AEE   GG      V  AAD+AFQGY+ALVAGLP+ S+  AD LWR V+ LTL D  V EAVA+GA+P+A++  TA +DREMEAVW+RPT LHLLLRAIQKDRRLRRG PW G   XXXXXXXXXXXX       KIDLT++SLS  VRELMPAAAD  GA CEAWIAAIRKCPW
Sbjct: 1023 AMDATINGDEPWGWKDALEESTTQL---NSLWQGGPAEEEGEGGVAGVTSVVGAADIAFQGYRALVAGLPEQSYLHADSLWREVIGLTLTDPHVKEAVAKGAMPSASEGRTAVSDREMEAVWERPTALHLLLRAIQKDRRLRRGAPWAGXXXXXXXXXXXXXXXEG-----KIDLTDESLSSTVRELMPAAADGGGALCEAWIAAIRKCPW 1225
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BLAST of mRNA_L-elsbetiae_contig5430.13670.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.710e-21
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 2 
Query:    2 AMDS--DSNNPWTWEDGVREAIERLDFFSSLKNEAGAEEGGSFSSVVVEEAADVAFQGYKALVAGLPDGSFKSADDLWRGVLVLTLADDGVGEAVARGAIPTAADDDTAANDREMEA 346
            AMD+  + + PW W+D + E+  +L+          +EEGG    + V  AAD+AFQGY+ALVAGLP+ S+  AD LWR V+ LTL D  V EAVA+GA+P+A++D TA +DREMEA
Sbjct: 1046 AMDAMINGDEPWGWKDALEESTSQLNSLWQGGPAEESEEGGVAGVLSVVRAADIAFQGYRALVAGLPEQSYLHADSLWREVIGLTLTDPHVKEAVAKGAMPSASEDRTAVSDREMEA 1162
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5430.13670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMM2_ECTSI9.750e-5762.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHH9_9PHAE1.710e-2149.57Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5430contigL-elsbetiae_contig5430:240..3844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size649
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5430.13670.1prot_L-elsbetiae_contig5430.13670.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5430 244..3817 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.3564897-UTR-L-elsbetiae_contig5430:239..2431622816568.3564897-UTR-L-elsbetiae_contig5430:239..243Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5430 240..243 +
1691683653.2803879-UTR-L-elsbetiae_contig5430:239..2431691683653.2803879-UTR-L-elsbetiae_contig5430:239..243Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5430 240..243 +
1622816568.4055367-UTR-L-elsbetiae_contig5430:3817..38441622816568.4055367-UTR-L-elsbetiae_contig5430:3817..3844Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5430 3818..3844 +
1691683653.3136466-UTR-L-elsbetiae_contig5430:3817..38441691683653.3136466-UTR-L-elsbetiae_contig5430:3817..3844Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5430 3818..3844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.366514-CDS-L-elsbetiae_contig5430:243..4231622816568.366514-CDS-L-elsbetiae_contig5430:243..423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5430 244..423 +
1691683653.2892203-CDS-L-elsbetiae_contig5430:243..4231691683653.2892203-CDS-L-elsbetiae_contig5430:243..423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5430 244..423 +
1622816568.3792524-CDS-L-elsbetiae_contig5430:1315..14741622816568.3792524-CDS-L-elsbetiae_contig5430:1315..1474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5430 1316..1474 +
1691683653.2974384-CDS-L-elsbetiae_contig5430:1315..14741691683653.2974384-CDS-L-elsbetiae_contig5430:1315..1474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5430 1316..1474 +
1622816568.3914886-CDS-L-elsbetiae_contig5430:3538..38171622816568.3914886-CDS-L-elsbetiae_contig5430:3538..3817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5430 3539..3817 +
1691683653.305487-CDS-L-elsbetiae_contig5430:3538..38171691683653.305487-CDS-L-elsbetiae_contig5430:3538..3817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5430 3539..3817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5430.13670.1

>prot_L-elsbetiae_contig5430.13670.1 ID=prot_L-elsbetiae_contig5430.13670.1|Name=mRNA_L-elsbetiae_contig5430.13670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MDSDSNNPWTWEDGVREAIERLDFFSSLKNEAGAEEGGSFSSVVVEEAAD
VAFQGYKALVAGLPDGSFKSADDLWRGVLVLTLADDGVGEAVARGAIPTA
ADDDTAANDREMEAVWKRPTVLHLLLRAIQKDRRLRRGVPWVGGRGGGGV
AALRRAGEEEEEERRKIDLTNDSLSRIVRELMPAAADKNGATCEAWIAAI
RKCPW*
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mRNA from alignment at L-elsbetiae_contig5430:240..3844+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5430.13670.1 ID=mRNA_L-elsbetiae_contig5430.13670.1|Name=mRNA_L-elsbetiae_contig5430.13670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3605bp|location=Sequence derived from alignment at L-elsbetiae_contig5430:240..3844+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGATGGACAGCGACAGCAACAATCCCTGGACCTGGGAGGATGGCGTTA
GAGAGGCGATCGAGCGGCTGGATTTCTTTTCCTCGCTCAAGAACGAGGCA
GGGGCGGAAGAGGGGGGGTCGTTTTCTTCCGTCGTGGTTGAGGAAGCGGC
GGACGTTGCTTTCCAGGGCTACAAGGCTCTCGTCGTGAGTATCGTTGCCT
GTTTGTGTTTGTTGTTACTGTGTTGTTGTTGATGTGTTGTTGTTGGTGTT
GTTGTTGATGATGTGCTGCTGCTGCTGTTGTTGATGATGATGTGCTGCTG
CTGTTATTGTTGTTGCTGATGTGTTTTGTTGGTATTGATGATGATGTTGT
AGTCGTATATTCACGCGTTCGGCCTGCTCCCCTCCCCCCCTCCTCTGGGG
CCCGGAGAGAGAGGGAGTTGCTCTCTGGAATCTAGTGTAACTGCAAAATG
TCGCGTGCTGCTGCTGTACTGCACTGCACTGCACTGCATCGGTTGCCCGA
AACTGCGAGGCACGGGACTGTCAGCTCTTGTCTCGTGTAGCTGTTAGAGC
TGCTGCTGTGTTTCCGGTCTTGTCTTGGTCTGGTATTTGCTGCATACCTA
GATACGACCATCTCCCGGGATGTCTCACCCAATGAATATGTGCTTGCCTT
CCTTATCGGGCCTGCTAGTGTCGTATATTACCGTCATTCGCCTTTATGTA
TGTATCTATTATTTCACACTTTTGCGATCTGCATCAAGAGACAGGGAACA
AAAAGGGGGTGTTAATTAGTTTTTCATTCGGTGCTCTCTCTCCTCGCGAT
CTGCGTCGAAAGACAGGGTAAAAGGGGGTACCACACGCATTATGTATGCA
TTCGGTGCTCTCTCTCCTCTTCTCTGTGTCAGATGTTGACGATTGTACCT
AAATATGTAGCCGCCGTCTTGTTGACTTTTTTCCTGACGTGTGTCTTGGA
TCTCACGATTTTCCGCCTCGACTGTCTCTCTGTCTCTCTGTCTGTCTCTC
TGTCTGTCTGTTCGTCCGTCTGTCCGTCTGTCTGTCTGCCCCGACACGGC
TGTCTTGGATGCACACGCGTGTACAGGCCGGCCTCCCCGACGGGTCGTTC
AAGAGCGCCGACGACCTGTGGCGGGGGGTGTTGGTGCTCACCCTGGCCGA
CGATGGGGTCGGAGAGGCCGTCGCCCGGGGGGCTATACCGACCGCCGCGG
ACGACGACACGGCGGCCAACGACCGGGAGATGGAGGTGTGTGTCAGGGCT
ATGTAGGGTTGCGAGCCTTTCACCGTAATCTGTGTGTGTGTGTGTTTTTT
TTTTCTTCACGTTTATTTCCATTGCTCGATGGGCTCCTGTGTCACGAGGA
CATCTTGCCAGAGTACTGAACCGTGGTCACACAGAAGGGTTCCTTTCCCC
AAGGCCCCCACTCCTCCCGTCTGCGGTACTTGCCTAAGATTTTTGTCGCG
AGAAGGGTTCAGCCGTCCCTTTCCCTCGTCGACGGTGACGTCGAAGTTTG
TATTTATGGTTCTAACCGAAGATGTGACACAAGATACCATACCCCCTGGA
CAGATTTTCAAAAGCTCGGGTTCCTCCCCAGCAGGAAGAGTGTCATGCCG
ATAAGGGGGGTGGCGTTGGAAAGATCTACCGTAGGTGACACAAGATACCA
CACCCCCTGGACCGAACTTTAGGGCTCCATTACTCCGTTACGAAGAAAGT
GGCAGCACCTAGCAACACATGTTCGGACAGTCCTCGACTAGATCTTTCCA
ATGCCACCTCTTTCGGCACTGGCACTCTTCTCGCTGAGGAGGAATCGAGC
TTTGAAAGTCTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAGTC
GAGGGCTGTCCGAAAACGTGTCGCTTGGTGCTGGCGGGCGGGCGCCCTGT
TCGTTACGGAGTACCGTAGGTGACACGAGATATCACACCCCCTGGACACA
TTTTCAAAGCTCGATTCCTCCCCAGCAAGAAGAGTGCCAGTGCCGAAAGG
GGTGGCGTTGCAAGGATCTAATCGAGTGCTGTCCGAAAATGTGTCGTTCG
GTGCTGGCACCTTCTTCGTTACGGAGTAATGGAGCTCTAAAATTCGGTCC
AGGTGGTGTGGTATCTTGTGTCACCTGCGGTATGTGTGATAGTTGCTCTT
CTTCTGGTGGGCTCAACGCGACAAACGTTGCGGCCTTTTATATGTGTTTG
CGATCAAACTGAAACGGTTGGAGCAGGCGAGGGGGGCGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGCATGGGCTGGCCCAGACGTGACTTTAGCCGTGTA
CTTCCGCCCGGTTCTCTTCGCTGCCGGCTCTACCCCTGGCTGGATTTTTT
TTTTAGCTTTTAAGGCCTGGGTAGGTAGGTTGGTGTACATTATTGTGTCG
TGTGTTTTGTTGGGTTGGATGGGGGATCAAAGGTGGTTGTGCCCGCGGGT
GTGTCCCCAAGCACCAATCGCCTACAGGCAGGTGCCGCTCGCTCGTTTTG
GTGGCTCGCTCTCTCAGGAAAATGATAACAACTGGTACAATTGGTTTTCG
TTTTGGTGTCTTTGTTGTTGTTGTTGTTGTTACTGTTGTTGTTGTTGCGG
TCGGTGTGTGAGTGGCAGGTGCCGAGGTGATCGATTTGCTGCTGGTTGCT
CTCTGTAGCTACCCTCCGCTTGTTTTCTTCGGGGTTTTCGGTGGGCAAGA
AGGCAAACTAAACTATCTGGCTAGATAGATACTGAAGTACAACCCAAAGA
AGACGGTTTTTATTTTATTTGTGCGAGCTGGACGGTATCTGGCGATGATA
CGGGGCGGGTGGGAGGGGCCCTGTGGCGAAGCCAAGTTATTTATGTAGGC
AGGGCGGGGTAGGGGGGCAACGGAAGCCCTACCCGTTGACTTGTTTTGGA
CTTGTGGTGGTGTAACCCGCTCCGCTGTCGAATGCGCCATCTCAGCCCCC
GCCGCGGACGCCGACCATCGGCGGCAGGAACTTTCAAACGTTTACGTATC
GTCAACGTCTGGCTTTCCGCAGTAGTAGCAGCAGCAGCAGCAGTGGTTTG
TATCGTTTACGTTTGGCTTTCCGCAGCAGCAGCAGCAGTGACACAAGCTA
AACCAAGCACACAAGTCAGTAGGTACTACCAGGATTTTTTAGTGGCAGCG
TCACCCCCGCCCCCCTGTTCATTCCGGACTGCTTGCTGCGTCGTCTGTCT
GCCTGTCTGTGGCACTACGAAAAGCTACTGAGCCCCCCTCCCCTCCCCTC
CTCCCCCCTCCCCTCCCATCGAACATTTGATACGACTGACACCATCCAGG
CCGTTTGGAAGCGGCCAACCGTGCTGCACCTGCTCCTACGGGCGATCCAG
AAAGACCGGCGCCTGCGGAGGGGGGTACCGTGGGTGGGCGGCCGCGGCGG
CGGCGGCGTTGCGGCCCTCCGCCGCGCGGGAGAGGAGGAGGAAGAGGAGC
GAAGGAAGATAGACCTGACCAACGATTCCCTGTCGAGGATAGTGCGCGAG
CTCATGCCGGCGGCCGCAGACAAGAACGGCGCCACGTGTGAAGCGTGGAT
CGCCGCTATCCGCAAGTGTCCTTGGTGATTGATTTTATGGAGATACTTTC
ATACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5430:240..3844+

>mRNA_L-elsbetiae_contig5430.13670.1 ID=mRNA_L-elsbetiae_contig5430.13670.1|Name=mRNA_L-elsbetiae_contig5430.13670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig5430:240..3844+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAGCGACAGCAACAATCCCTGGACCTGGGAGGATGGCGTTAGAGA
GGCGATCGAGCGGCTGGATTTCTTTTCCTCGCTCAAGAACGAGGCAGGGG
CGGAAGAGGGGGGGTCGTTTTCTTCCGTCGTGGTTGAGGAAGCGGCGGAC
GTTGCTTTCCAGGGCTACAAGGCTCTCGTCATGGACAGCGACAGCAACAA
TCCCTGGACCTGGGAGGATGGCGTTAGAGAGGCGATCGAGCGGCTGGATT
TCTTTTCCTCGCTCAAGAACGAGGCAGGGGCGGAAGAGGGGGGGTCGTTT
TCTTCCGTCGTGGTTGAGGAAGCGGCGGACGTTGCTTTCCAGGGCTACAA
GGCTCTCGTCGCCGGCCTCCCCGACGGGTCGTTCAAGAGCGCCGACGACC
TGTGGCGGGGGGTGTTGGTGCTCACCCTGGCCGACGATGGGGTCGGAGAG
GCCGTCGCCCGGGGGGCTATACCGACCGCCGCGGACGACGACACGGCGGC
CAACGACCGGGAGATGGAGGCCGGCCTCCCCGACGGGTCGTTCAAGAGCG
CCGACGACCTGTGGCGGGGGGTGTTGGTGCTCACCCTGGCCGACGATGGG
GTCGGAGAGGCCGTCGCCCGGGGGGCTATACCGACCGCCGCGGACGACGA
CACGGCGGCCAACGACCGGGAGATGGAGGCCGTTTGGAAGCGGCCAACCG
TGCTGCACCTGCTCCTACGGGCGATCCAGAAAGACCGGCGCCTGCGGAGG
GGGGTACCGTGGGTGGGCGGCCGCGGCGGCGGCGGCGTTGCGGCCCTCCG
CCGCGCGGGAGAGGAGGAGGAAGAGGAGCGAAGGAAGATAGACCTGACCA
ACGATTCCCTGTCGAGGATAGTGCGCGAGCTCATGCCGGCGGCCGCAGAC
AAGAACGGCGCCACGTGTGAAGCGTGGATCGCCGCTATCCGCAAGTGTCC
TTGGTGAGCCGTTTGGAAGCGGCCAACCGTGCTGCACCTGCTCCTACGGG
CGATCCAGAAAGACCGGCGCCTGCGGAGGGGGGTACCGTGGGTGGGCGGC
CGCGGCGGCGGCGGCGTTGCGGCCCTCCGCCGCGCGGGAGAGGAGGAGGA
AGAGGAGCGAAGGAAGATAGACCTGACCAACGATTCCCTGTCGAGGATAG
TGCGCGAGCTCATGCCGGCGGCCGCAGACAAGAACGGCGCCACGTGTGAA
GCGTGGATCGCCGCTATCCGCAAGTGTCCTTGGTGA
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