mRNA_L-elsbetiae_contig543.13667.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig543.13667.1 vs. uniprot
Match: D8LDF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF1_ECTSI) HSP 1 Score: 868 bits (2243), Expect = 1.520e-313 Identity = 432/539 (80.15%), Postives = 469/539 (87.01%), Query Frame = 2 Query: 248 MNIGTGPEANFRDGCLSLRAATLDKMKASQSPGFYGQVPNGLGRQPLSNFRTQPVVGWGHYTGGVNDKGRPVETLNGKGTPGPQYQLDKLTCGQQVQSRFRTAPTPVFGSSQRAPINEEGCVSPGPMTAAVNVNAQPPGPKYSMAGAPWRKERTVAEKSPGPGEYNVYGCLGEQKESTRTSFKGFGFGGSGVTREMTLPTRNVPGPGQYAWAEKDRPKQPGGKFGLAAQRPLSRKETRPAPGQYTIPSTMGNTPDSKFRTVVAPGFGTPPPID-QRPHSAAGRLGGGPGPGAYDVGRVDSLAVSKKPLSTDKSCLSFQIKPPSIARPNGHHERKLQELDPESLRRAVESTRKGCRVPNISFGVGPQRPVENPGKCPGPQAYDXXXXXXXVSACKSSPIRGVKFGTGPQRHNMIESGNSPGPNASYVIPSTMGAQ-SNSMFESVKASSFGNPPKKPSRETATNSHGPGPADYKPTFSNLPQTTHGLSFGGAAAYGKGGGARGAVKRSSTPGPGAYAIGSGLGAQTSSKYRSGTAPSFRSR 1858 MNIGTGPEA+FRDGCLSLRA+TLDK++ASQSPGF GQVPNGLGRQPLSNFRTQPVVGWGHYT G+NDKGRPVETLNGK TPGPQY+LDK+TCGQQVQSRF+TAPTPVFGSSQR P+N EGCVSPGPMTA VNV+AQPPGPKYSMAGAPWRK +T A KSPGPG+YNVYG LGEQKESTRTSFKGFGFGGSGV R+M LP+R VPGPG Y+W EKDRP QPGGKFG A QRP +R + RPAPGQY+IPST+G T DS+FRTVVAPGFGTPPPID QRPHSAAGRLGGGPGPGAYDVGRVDSLAV KKPLST+KSCLSFQIKPP+ +PN ERK+QELDPESLRRA++STRKGCRVPN+SFGVGPQRPV+NPGKCPGPQAYD VSACKSSP RGVKFGTGPQRHN ES SPGPNA Y IPST+GAQ +NSMFESVK SSFG PP + SR T PGP+DY PT SN+ QTTH LSFGGA KGGGARG +RSS+PGPGAY+IGSGLG QTSSKY S T PSFR+R Sbjct: 1 MNIGTGPEADFRDGCLSLRASTLDKIRASQSPGFSGQVPNGLGRQPLSNFRTQPVVGWGHYTDGINDKGRPVETLNGKNTPGPQYELDKVTCGQQVQSRFKTAPTPVFGSSQRPPLNGEGCVSPGPMTATVNVSAQPPGPKYSMAGAPWRK-KTKAPKSPGPGQYNVYGSLGEQKESTRTSFKGFGFGGSGVARDMALPSRKVPGPGHYSWHEKDRPSQPGGKFGQAPQRPQTRGDLRPAPGQYSIPSTLGTTMDSRFRTVVAPGFGTPPPIDEQRPHSAAGRLGGGPGPGAYDVGRVDSLAVQKKPLSTEKSCLSFQIKPPTSVKPNVSRERKMQELDPESLRRAIKSTRKGCRVPNVSFGVGPQRPVDNPGKCPGPQAYDPENLRRAVSACKSSPTRGVKFGTGPQRHNTAESDKSPGPNAGYFIPSTLGAQQTNSMFESVKTSSFGPPPNRSSRRN-TPVVTPGPSDYNPTSSNMAQTTHALSFGGATPNSKGGGARGMPRRSSSPGPGAYSIGSGLGVQTSSKYPSSTGPSFRAR 537
BLAST of mRNA_L-elsbetiae_contig543.13667.1 vs. uniprot
Match: A0A485KFJ8_9STRA (Aste57867_3477 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KFJ8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.920e-7 Identity = 65/239 (27.20%), Postives = 91/239 (38.08%), Query Frame = 2 Query: 512 KLTCGQQVQSRFRTAPTPVFGSSQRAPINEEGCVSPGPMTAAVNVNAQPPGPKYSMAGAPWRKERTVAEKSPGPGEYNVYGCLGEQKESTRTSFKGFGFGGS---GVTREMTLPTRNVPGPGQYA--WAEKDRPKQPGGKFGLAAQRPLSRKETRPAPGQYTIPSTMGNTPD--SKFRTVVAPGFGTPPPIDQRP--HSAAGRLGGGPGPGAYDVGRVDSLAVSKKPLSTDKSCLSFQI 1201 K +CG+QV SR RTAPTP+FG+S R K+ KSPGPG Y V + ST + G G T ++ N PGPG Y + P P G + L + P PG Y P + NT S + A F P ++++P S+ +G PG Y+ G V AV K+ +ST + ++ Sbjct: 42 KSSCGEQVDSRKRTAPTPIFGTSSRP------------------------------------KDPGDGSKSPGPGAYQVPSAISRPVLSTMVTAPACSIAGREKFGSTSDLKSAA-NCPGPGDYTPHIVNPNEPIAPQFSLGKKWSKSLDGQSKVPGPGAYDTPENLLNTKTVLSTSKHATASSF---PKVNRKPLMESSTADVG----PGQYNTGNV---AVGKQVVSTVTNAAAYSF 233
BLAST of mRNA_L-elsbetiae_contig543.13667.1 vs. uniprot
Match: A0A067CAG1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CAG1_SAPPC) HSP 1 Score: 57.4 bits (137), Expect = 2.610e-5 Identity = 54/176 (30.68%), Postives = 74/176 (42.05%), Query Frame = 2 Query: 500 YQLDKLTCGQQVQSRFRTAPTPVFGSSQRAPINEEGCVSPGPMTAAVNVNAQPP-------GPKYSMAGAPWRKERTVAE-----KSPGPGEYNVYGCLGEQKESTRTSFKGFGFGGSGVTREMTLP---TRNVPGPGQYAWAEKDRPKQ--------PGGKFGLAAQRPLSRKET 958 Y K +CG QV SR RTAPT FGSS RA + +G SPGP V + P P S+AG K +V++ PGPG+Y+ + KE+ + + ++ T P T+ PGPG Y E K P F ++PL+ T Sbjct: 33 YDDIKSSCGDQVDSRKRTAPTTCFGSSSRAQGHSDGSKSPGPGAYQVPTSLGKPVLSTMRTAPACSVAGR--EKFGSVSDLKSAASCPGPGDYSSQ--VVNLKEANAPHYS--------LGKKWTTPAEPTKKSPGPGAYDTPESISSKAVRSTNRSAPASSFSKVNRKPLTESST 196 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig543.13667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig543.13667.1 >prot_L-elsbetiae_contig543.13667.1 ID=prot_L-elsbetiae_contig543.13667.1|Name=mRNA_L-elsbetiae_contig543.13667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=538bp MNIGTGPEANFRDGCLSLRAATLDKMKASQSPGFYGQVPNGLGRQPLSNFback to top mRNA from alignment at L-elsbetiae_contig543:16233..27268- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig543.13667.1 ID=mRNA_L-elsbetiae_contig543.13667.1|Name=mRNA_L-elsbetiae_contig543.13667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11036bp|location=Sequence derived from alignment at L-elsbetiae_contig543:16233..27268- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig543:16233..27268- >mRNA_L-elsbetiae_contig543.13667.1 ID=mRNA_L-elsbetiae_contig543.13667.1|Name=mRNA_L-elsbetiae_contig543.13667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3228bp|location=Sequence derived from alignment at L-elsbetiae_contig543:16233..27268- (Laminarionema elsbetiae ELsaHSoW15)back to top |