mRNA_L-elsbetiae_contig543.13669.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig543.13669.1
Unique NamemRNA_L-elsbetiae_contig543.13669.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig543.13669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig543contigL-elsbetiae_contig543:31682..32107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.0553377-CDS-L-elsbetiae_contig543:31681..320291622816568.0553377-CDS-L-elsbetiae_contig543:31681..32029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig543 31682..32029 +
1691683653.0475676-CDS-L-elsbetiae_contig543:31681..320291691683653.0475676-CDS-L-elsbetiae_contig543:31681..32029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig543 31682..32029 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.0687273-UTR-L-elsbetiae_contig543:32029..321071622816568.0687273-UTR-L-elsbetiae_contig543:32029..32107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig543 32030..32107 +
1691683653.0607026-UTR-L-elsbetiae_contig543:32029..321071691683653.0607026-UTR-L-elsbetiae_contig543:32029..32107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig543 32030..32107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig543.13669.1prot_L-elsbetiae_contig543.13669.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig543 31682..32029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig543.13669.1

>prot_L-elsbetiae_contig543.13669.1 ID=prot_L-elsbetiae_contig543.13669.1|Name=mRNA_L-elsbetiae_contig543.13669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MGLLETHQSSLAAPDCLQWHVCTESPSRTAVLWFSCLRVVWGSTNVLWVY
YIFLMSSAACGVPSACKRSSHFYHPPVRGTPSTYDATAVPPTRHDFLSRQ
KGFERKEEIHRCSVW*
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mRNA from alignment at L-elsbetiae_contig543:31682..32107+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig543.13669.1 ID=mRNA_L-elsbetiae_contig543.13669.1|Name=mRNA_L-elsbetiae_contig543.13669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig543:31682..32107+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACTGTTGGAGACACACCAATCCTCCCTGGCCGCCCCCGACTGCTT
GCAGTGGCATGTATGTACGGAATCACCAAGCCGTACAGCAGTTTTGTGGT
TTTCTTGTTTAAGAGTAGTTTGGGGAAGTACAAATGTATTATGGGTGTAT
TATATTTTCTTGATGTCTTCTGCTGCTTGTGGGGTTCCGTCCGCCTGCAA
AAGATCAAGCCACTTTTACCACCCGCCCGTGCGGGGCACCCCCTCTACGT
ACGATGCGACGGCCGTGCCCCCGACTCGACACGACTTTCTCTCAAGACAG
AAAGGGTTTGAGAGAAAGGAGGAGATACATAGATGCTCCGTCTGGTAGTG
GATGGACTAAGACCACCAACCGCAATTAAGGTCAATGGATGAAGGCGCAG
AAATATTACTATGTAGTGAGTGAGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig543:31682..32107+

>mRNA_L-elsbetiae_contig543.13669.1 ID=mRNA_L-elsbetiae_contig543.13669.1|Name=mRNA_L-elsbetiae_contig543.13669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig543:31682..32107+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACTGTTGGAGACACACCAATCCTCCCTGGCCGCCCCCGACTGCTT
GCAGTGGCATGTATGTACGGAATCACCAAGCCGTACAGCAGTTTTGTGGT
TTTCTTGTTTAAGAGTAGTTTGGGGAAGTACAAATGTATTATGGGTGTAT
TATATTTTCTTGATGTCTTCTGCTGCTTGTGGGGTTCCGTCCGCCTGCAA
AAGATCAAGCCACTTTTACCACCCGCCCGTGCGGGGCACCCCCTCTACGT
ACGATGCGACGGCCGTGCCCCCGACTCGACACGACTTTCTCTCAAGACAG
AAAGGGTTTGAGAGAAAGGAGGAGATACATAGATGCTCCGTCTGGTAGAT
GGGACTGTTGGAGACACACCAATCCTCCCTGGCCGCCCCCGACTGCTTGC
AGTGGCATGTATGTACGGAATCACCAAGCCGTACAGCAGTTTTGTGGTTT
TCTTGTTTAAGAGTAGTTTGGGGAAGTACAAATGTATTATGGGTGTATTA
TATTTTCTTGATGTCTTCTGCTGCTTGTGGGGTTCCGTCCGCCTGCAAAA
GATCAAGCCACTTTTACCACCCGCCCGTGCGGGGCACCCCCTCTACGTAC
GATGCGACGGCCGTGCCCCCGACTCGACACGACTTTCTCTCAAGACAGAA
AGGGTTTGAGAGAAAGGAGGAGATACATAGATGCTCCGTCTGGTAG
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