mRNA_L-elsbetiae_contig543.13668.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig543.13668.1
Unique NamemRNA_L-elsbetiae_contig543.13668.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig543.13668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig543contigL-elsbetiae_contig543:30949..31455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig543.13668.1prot_L-elsbetiae_contig543.13668.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig543 31054..31392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.9950294-UTR-L-elsbetiae_contig543:30948..310531622816567.9950294-UTR-L-elsbetiae_contig543:30948..31053Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig543 30949..31053 +
1691683653.004899-UTR-L-elsbetiae_contig543:30948..310531691683653.004899-UTR-L-elsbetiae_contig543:30948..31053Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig543 30949..31053 +
1622816568.0166261-UTR-L-elsbetiae_contig543:31392..314551622816568.0166261-UTR-L-elsbetiae_contig543:31392..31455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig543 31393..31455 +
1691683653.0351043-UTR-L-elsbetiae_contig543:31392..314551691683653.0351043-UTR-L-elsbetiae_contig543:31392..31455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig543 31393..31455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.0056105-CDS-L-elsbetiae_contig543:31053..313921622816568.0056105-CDS-L-elsbetiae_contig543:31053..31392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig543 31054..31392 +
1691683653.0165422-CDS-L-elsbetiae_contig543:31053..313921691683653.0165422-CDS-L-elsbetiae_contig543:31053..31392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig543 31054..31392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig543.13668.1

>prot_L-elsbetiae_contig543.13668.1 ID=prot_L-elsbetiae_contig543.13668.1|Name=mRNA_L-elsbetiae_contig543.13668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MFTEDRCLGWVRGDQTTFRQTREETTLSSLTGQEQGGVHRKCCLAIDKPL
GPPPIGRMHGDACTRMRGIFKNKSTTTTVAFADYIYVSVGMNTQSMGLCV
CCVCMLHVCIFY*
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mRNA from alignment at L-elsbetiae_contig543:30949..31455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig543.13668.1 ID=mRNA_L-elsbetiae_contig543.13668.1|Name=mRNA_L-elsbetiae_contig543.13668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=507bp|location=Sequence derived from alignment at L-elsbetiae_contig543:30949..31455+ (Laminarionema elsbetiae ELsaHSoW15)
CACCATCCAGCAAGCGCTACGGAAGAAGGACGCCTTGAGCGTTGAGATCA
GGGTGTAGGCCACGACGTACCTGCAGCGCCAAAAAATGAAAATCGTCGGT
CGGAGATGTTTACCGAAGATAGATGCTTGGGTTGGGTGCGCGGGGATCAG
ACGACGTTTCGGCAGACGAGGGAAGAAACAACGTTGTCTTCGCTGACAGG
CCAGGAGCAGGGGGGCGTACATAGAAAGTGCTGCCTGGCGATAGATAAGC
CACTGGGACCCCCCCCTATAGGACGCATGCACGGGGACGCATGCACAAGG
ATGCGCGGTATTTTCAAAAACAAATCTACTACAACTACTGTTGCGTTTGC
GGATTACATTTATGTGTCGGTCGGTATGAATACGCAAAGCATGGGATTGT
GTGTCTGTTGTGTGTGTATGCTGCATGTGTGTATTTTTTACTAGTGTGTA
TCCTACAATACTTCTCTTCTCGCCATAAAAAATCAAGGCAAGCATCGCAG
GAGGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig543:30949..31455+

>mRNA_L-elsbetiae_contig543.13668.1 ID=mRNA_L-elsbetiae_contig543.13668.1|Name=mRNA_L-elsbetiae_contig543.13668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig543:30949..31455+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTACCGAAGATAGATGCTTGGGTTGGGTGCGCGGGGATCAGACGAC
GTTTCGGCAGACGAGGGAAGAAACAACGTTGTCTTCGCTGACAGGCCAGG
AGCAGGGGGGCGTACATAGAAAGTGCTGCCTGGCGATAGATAAGCCACTG
GGACCCCCCCCTATAGGACGCATGCACGGGGACGCATGCACAAGGATGCG
CGGTATTTTCAAAAACAAATCTACTACAACTACTGTTGCGTTTGCGGATT
ACATTTATGTGTCGGTCGGTATGAATACGCAAAGCATGGGATTGTGTGTC
TGTTGTGTGTGTATGCTGCATGTGTGTATTTTTTACTAGATGTTTACCGA
AGATAGATGCTTGGGTTGGGTGCGCGGGGATCAGACGACGTTTCGGCAGA
CGAGGGAAGAAACAACGTTGTCTTCGCTGACAGGCCAGGAGCAGGGGGGC
GTACATAGAAAGTGCTGCCTGGCGATAGATAAGCCACTGGGACCCCCCCC
TATAGGACGCATGCACGGGGACGCATGCACAAGGATGCGCGGTATTTTCA
AAAACAAATCTACTACAACTACTGTTGCGTTTGCGGATTACATTTATGTG
TCGGTCGGTATGAATACGCAAAGCATGGGATTGTGTGTCTGTTGTGTGTG
TATGCTGCATGTGTGTATTTTTTACTAG
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