mRNA_L-elsbetiae_contig5424.13662.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5424.13662.1
Unique NamemRNA_L-elsbetiae_contig5424.13662.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5424.13662.1 vs. uniprot
Match: A0A835YNW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.950e-32
Identity = 79/205 (38.54%), Postives = 118/205 (57.56%), Query Frame = 1 
Query:   40 PVPPQVLLEDLTLVIDVALLVAFATAIHLLRQKLITVATLTHALSVAFLVFTVGHYIEQHVIGMDGVEDLLVSRRGPRRGGRGRWWLNSWPTAGLLSIGAIMTLVARFWNCVEEGSCCSVGGADPLHNRCKMMRMRFFSPVFSATVVFVYLCISSRLNALLGGSVLHPRDGGYALAVLASPALLCSICLSGCASVWLYAVLVEEK 654
            P   QVLLEDL+ +ID  +L+A  TA++ LR++ +++ TLT+ALS+A L  TVGHY+EQHV G  G++DL++    P R         S   + L+   +I  L+     C      C  G     H++CK+ R+R    V+ ++  F++   + R+NA++GGSVLHPR GG ALAVL SP L   +    C   WL+A L + +
Sbjct:    3 PSRQQVLLEDLSALIDGVILLACVTALYSLRRQELSLCTLTYALSLALLTATVGHYLEQHVFGEAGIQDLVLY---PSRSA------GSVSVSLLVCAASIGALMCSLTRCQPLSFDCIAGEYAMTHHQCKVHRLRHALRVWLSSAAFLWAAAALRMNAVVGGSVLHPRGGGCALAVLRSPELAACVVAGACGGAWLHAQLAQVQ 198
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5424.13662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNW1_9STRA1.950e-3238.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5424contigL-elsbetiae_contig5424:9249..11351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_002860.1
Exons3
Model size654
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5424.13662.1prot_L-elsbetiae_contig5424.13662.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5424 9249..11351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.5508378-CDS-L-elsbetiae_contig5424:9248..94031622816567.5508378-CDS-L-elsbetiae_contig5424:9248..9403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5424 9249..9403 -
1691683652.6554925-CDS-L-elsbetiae_contig5424:9248..94031691683652.6554925-CDS-L-elsbetiae_contig5424:9248..9403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5424 9249..9403 -
1622816567.564887-CDS-L-elsbetiae_contig5424:10318..104651622816567.564887-CDS-L-elsbetiae_contig5424:10318..10465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5424 10319..10465 -
1691683652.6646507-CDS-L-elsbetiae_contig5424:10318..104651691683652.6646507-CDS-L-elsbetiae_contig5424:10318..10465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5424 10319..10465 -
1622816567.5766997-CDS-L-elsbetiae_contig5424:10999..113511622816567.5766997-CDS-L-elsbetiae_contig5424:10999..11351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5424 11000..11351 -
1691683652.6732059-CDS-L-elsbetiae_contig5424:10999..113511691683652.6732059-CDS-L-elsbetiae_contig5424:10999..11351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5424 11000..11351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5424.13662.1

>prot_L-elsbetiae_contig5424.13662.1 ID=prot_L-elsbetiae_contig5424.13662.1|Name=mRNA_L-elsbetiae_contig5424.13662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MHTTSLHHEPSFSPVPPQVLLEDLTLVIDVALLVAFATAIHLLRQKLITV
ATLTHALSVAFLVFTVGHYIEQHVIGMDGVEDLLVSRRGPRRGGRGRWWL
NSWPTAGLLSIGAIMTLVARFWNCVEEGSCCSVGGADPLHNRCKMMRMRF
FSPVFSATVVFVYLCISSRLNALLGGSVLHPRDGGYALAVLASPALLCSI
CLSGCASVWLYAVLVEEK
back to top

mRNA from alignment at L-elsbetiae_contig5424:9249..11351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5424.13662.1 ID=mRNA_L-elsbetiae_contig5424.13662.1|Name=mRNA_L-elsbetiae_contig5424.13662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2103bp|location=Sequence derived from alignment at L-elsbetiae_contig5424:9249..11351- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACACGACGAGCCTTCACCACGAGCCTTCATTTTCTCCTGTTCCCCC
CCAAGTCCTCCTCGAGGACCTCACCCTAGTGATCGACGTAGCTCTCCTCG
TGGCCTTCGCGACGGCCATACACCTTCTCCGACAGAAGCTTATCACTGTC
GCAACTCTAACTCACGCTCTCTCCGTGGCCTTTCTCGTATTCACGGTGGG
CCACTACATCGAGCAACATGTCATCGGCATGGACGGGGTAGAAGACCTTC
TTGTGTCGCGCCGTGGGCCACGCCGAGGAGGAAGAGGGCGGTGGTGGCTC
AACAGCTGGCCGACCGCCGGATTGCTCTCGATTGGGGCTATCATGACCCT
TGGTAAGTGCATGCTCGGTGCTGAGAGGATCGGGTATATCTGCATGAGTG
TCAAATTTCAAATTTCGTCCAACGACAGAGTTTAGACTATTCCTGTGTGG
AAAACGCACTTCGTATGTTGTGCTTCGTACAAAACAGGATGTGCGGGCTG
GAAAGTGCCCTGTAAAGGGGTGGGATGAACTTCTAGGCGAGACTAATTGC
GCATCATTTTCGTCCAGGAGTACAAGTAGTCGAGAGACTGGATTTTTGCA
GTCTCGCTGGAGGCTTCAAACGACCTGTGTTCGCACGCCCTGTCCGCTTC
CTTGCGTGGTTGGTCCCCAAAAGTTGATGCACGAGAGTGTGAATCCCATA
TTTAGTCAAAACAAATCACAACAGCCGTCTCTAGTGGCATCTCGAGATTG
CGTTTCCTAGTCTCCTCACAAGTAGACGCTGCTTGAAATAGCGGCACCTC
TGCTTTTCCCGCCCCCCGCCAACTTGTTGATTCCCGTGTATATGCACCTC
GCGTGTATCACGTTGTATCTATGCAATTGACATCAGTGGCTCGCTTCTGG
AACTGCGTTGAGGAAGGCAGCTGCTGTTCCGTTGGAGGTGCAGACCCGCT
CCACAACCGGTGCAAAATGATGAGGATGCGATTTTTTTCGCCGGTGTTTT
CGGCGACGGTGGTGTTCGTGTACCTGTGCATCAGTGAGTTGGTTCTCCGA
CACAGTAGTTCAGCAATGTTGGTTGGTTCTCGCTTGGCGACGATAGGAAG
GTCCCGAACAGATTTTAACCATGCAGCCTGCAGAGACGCACTCCCACATC
CTTCGACTTGGTTGTCAAGGAAAATCCTGGTTTCCTTATTAAAGAAGCAC
AGTTTTTTCGTGCCTTTTTCTTGGCTGCACTTTCTCGCATCATACTAGTC
TAGACTATGTCAAAAAATTCTGCAGTCTCGGCGATTCCGTCAACATGCCA
GCCGTGTACGCATGTGACGGATAAGTGCCCCCGCTGCCCCCTCTATGGGG
AAAAAGAGGTCCAATCTAGGCTTCTGCAAGTAGGGAAACGATTGCCTGTC
CGAGCGCTTCCACCTGCTTCCGAAAATTCAGATCTTTACCAGGAAAAGCA
CAACAGCAGTTGTTGTACTACATGCTTGCCTTGGCTGAACTCTACACAGT
AGGTAATCGTACGCCCCCGCCTCCACAACACGGGAAGGGCCTCGTTTCTA
CCCCGGTGCTGCAAGCTCTCGATTATAGGTAGAACATCGATCTGTGCCTT
TGCTCTGGAAAGGTACATCACAAACAGAAAATTGTCCGCCCGCTCCATAA
GAGAACCTCCATCACTGTCACATGCACATCTTCTTGGAAACCCCCCGCAA
GCTTCGATCCGGTATTTTTCGACCTCCAAGACGTCCGCCCCCCTTCCCGA
CGACCGCTTTTCTCAGTTGCTCATTGTTTTGAAAGAAAACCAGTGAACAA
AAAAATGAGCCTAACCCACATTAGAGCCGGAACTCCGTGGGAATTAACGG
GTATTCCCATGTAGTGACGCAATATTGGCCCGGCCGAGTGGTTGTTCGTC
GTTTTCTGTTGGCGATTCTCGCTAATTTACAGCTTGCTTGGGCGGCAGGT
TCTAGGCTAAACGCGTTGCTGGGAGGGAGCGTCCTGCACCCGAGGGATGG
AGGCTACGCGCTGGCCGTGCTTGCCAGCCCAGCCTTGCTGTGCTCTATTT
GTCTTTCCGGCTGCGCTTCGGTGTGGCTCTACGCTGTCCTCGTCGAAGAA
AAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5424:9249..11351-

>mRNA_L-elsbetiae_contig5424.13662.1 ID=mRNA_L-elsbetiae_contig5424.13662.1|Name=mRNA_L-elsbetiae_contig5424.13662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig5424:9249..11351- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACACGACGAGCCTTCACCACGAGCCTTCATTTTCTCCTGTTCCCCC
CCAAGTCCTCCTCGAGGACCTCACCCTAGTGATCGACGTAGCTCTCCTCG
TGGCCTTCGCGACGGCCATACACCTTCTCCGACAGAAGCTTATCACTGTC
GCAACTCTAACTCACGCTCTCTCCGTGGCCTTTCTCGTATTCACGGTGGG
CCACTACATCGAGCAACATGTCATCGGCATGGACGGGGTAGAAGACCTTC
TTGTGTCGCGCCGTGGGCCACGCCGAGGAGGAAGAGGGCGGTGGTGGCTC
AACAGCTGGCCGACCGCCGGATTGCTCTCGATTGGGGCTATCATGACCCT
TGATGCACACGACGAGCCTTCACCACGAGCCTTCATTTTCTCCTGTTCCC
CCCCAAGTCCTCCTCGAGGACCTCACCCTAGTGATCGACGTAGCTCTCCT
CGTGGCCTTCGCGACGGCCATACACCTTCTCCGACAGAAGCTTATCACTG
TCGCAACTCTAACTCACGCTCTCTCCGTGGCCTTTCTCGTATTCACGGTG
GGCCACTACATCGAGCAACATGTCATCGGCATGGACGGGGTAGAAGACCT
TCTTGTGTCGCGCCGTGGGCCACGCCGAGGAGGAAGAGGGCGGTGGTGGC
TCAACAGCTGGCCGACCGCCGGATTGCTCTCGATTGGGGCTATCATGACC
CTTGTGGCTCGCTTCTGGAACTGCGTTGAGGAAGGCAGCTGCTGTTCCGT
TGGAGGTGCAGACCCGCTCCACAACCGGTGCAAAATGATGAGGATGCGAT
TTTTTTCGCCGGTGTTTTCGGCGACGGTGGTGTTCGTGTACCTGTGCATC
ATGGCTCGCTTCTGGAACTGCGTTGAGGAAGGCAGCTGCTGTTCCGTTGG
AGGTGCAGACCCGCTCCACAACCGGTGCAAAATGATGAGGATGCGATTTT
TTTCGCCGGTGTTTTCGGCGACGGTGGTGTTCGTGTACCTGTGCATCAGT
TCTAGGCTAAACGCGTTGCTGGGAGGGAGCGTCCTGCACCCGAGGGATGG
AGGCTACGCGCTGGCCGTGCTTGCCAGCCCAGCCTTGCTGTGCTCTATTT
GTCTTTCCGGCTGCGCTTCGGTGTGGCTCTACGCTGTCCTCGTCGAAGAA
AAGGTTCTAGGCTAAACGCGTTGCTGGGAGGGAGCGTCCTGCACCCGAGG
GATGGAGGCTACGCGCTGGCCGTGCTTGCCAGCCCAGCCTTGCTGTGCTC
TATTTGTCTTTCCGGCTGCGCTTCGGTGTGGCTCTACGCTGTCCTCGTCG
AAGAAAAG
back to top