mRNA_L-elsbetiae_contig5424.13661.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5424.13661.1
Unique NamemRNA_L-elsbetiae_contig5424.13661.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5424.13661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5424contigL-elsbetiae_contig5424:7274..7707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.518802-CDS-L-elsbetiae_contig5424:7273..77051622816567.518802-CDS-L-elsbetiae_contig5424:7273..7705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5424 7274..7705 +
1691683652.6460571-CDS-L-elsbetiae_contig5424:7273..77051691683652.6460571-CDS-L-elsbetiae_contig5424:7273..7705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5424 7274..7705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5424.13661.1prot_L-elsbetiae_contig5424.13661.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5424 7274..7705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5424.13661.1

>prot_L-elsbetiae_contig5424.13661.1 ID=prot_L-elsbetiae_contig5424.13661.1|Name=mRNA_L-elsbetiae_contig5424.13661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
HPSLPTSPTSLLSSSLLCVVYLTPLPSSLLLLRLFLFISLLLCGRPDGDK
GEEKREEEEEEEEDVHPLVFSTAGGSNGRFTTLDLPALPLNLLLPPIPTP
PGNGKNGGPRGGSGSPTTEPSLPPLAATFAVPPPLSRRELFPVA
back to top

mRNA from alignment at L-elsbetiae_contig5424:7274..7707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5424.13661.1 ID=mRNA_L-elsbetiae_contig5424.13661.1|Name=mRNA_L-elsbetiae_contig5424.13661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=434bp|location=Sequence derived from alignment at L-elsbetiae_contig5424:7274..7707+ (Laminarionema elsbetiae ELsaHSoW15)
CATCCATCGTTGCCAACATCGCCGACATCGCTGCTGTCGTCGTCGCTGCT
ATGTGTAGTGTATCTAACCCCGTTGCCATCGTCGCTTCTGCTGCTGCGGC
TGTTCTTATTTATCTCCCTCCTCCTCTGCGGGCGCCCCGACGGCGACAAA
GGAGAAGAGAAGAGGGAGGAGGAGGAGGAGGAAGAAGAAGACGTCCACCC
ATTGGTGTTCTCCACCGCCGGAGGGAGCAACGGTCGCTTTACCACCCTCG
ATCTTCCGGCACTACCGCTGAATCTGCTACTACCGCCTATCCCTACTCCG
CCCGGTAACGGCAAAAACGGCGGACCTAGAGGGGGCTCGGGGTCTCCAAC
CACGGAGCCCTCGCTGCCGCCGCTTGCCGCCACTTTTGCGGTCCCGCCTC
CTCTTTCGCGGCGGGAACTCTTCCCCGTGGCGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5424:7274..7707+

>mRNA_L-elsbetiae_contig5424.13661.1 ID=mRNA_L-elsbetiae_contig5424.13661.1|Name=mRNA_L-elsbetiae_contig5424.13661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig5424:7274..7707+ (Laminarionema elsbetiae ELsaHSoW15)
CATCCATCGTTGCCAACATCGCCGACATCGCTGCTGTCGTCGTCGCTGCT
ATGTGTAGTGTATCTAACCCCGTTGCCATCGTCGCTTCTGCTGCTGCGGC
TGTTCTTATTTATCTCCCTCCTCCTCTGCGGGCGCCCCGACGGCGACAAA
GGAGAAGAGAAGAGGGAGGAGGAGGAGGAGGAAGAAGAAGACGTCCACCC
ATTGGTGTTCTCCACCGCCGGAGGGAGCAACGGTCGCTTTACCACCCTCG
ATCTTCCGGCACTACCGCTGAATCTGCTACTACCGCCTATCCCTACTCCG
CCCGGTAACGGCAAAAACGGCGGACCTAGAGGGGGCTCGGGGTCTCCAAC
CACGGAGCCCTCGCTGCCGCCGCTTGCCGCCACTTTTGCGGTCCCGCCTC
CTCTTTCGCGGCGGGAACTCTTCCCCGTGGCGCATCCATCGTTGCCAACA
TCGCCGACATCGCTGCTGTCGTCGTCGCTGCTATGTGTAGTGTATCTAAC
CCCGTTGCCATCGTCGCTTCTGCTGCTGCGGCTGTTCTTATTTATCTCCC
TCCTCCTCTGCGGGCGCCCCGACGGCGACAAAGGAGAAGAGAAGAGGGAG
GAGGAGGAGGAGGAAGAAGAAGACGTCCACCCATTGGTGTTCTCCACCGC
CGGAGGGAGCAACGGTCGCTTTACCACCCTCGATCTTCCGGCACTACCGC
TGAATCTGCTACTACCGCCTATCCCTACTCCGCCCGGTAACGGCAAAAAC
GGCGGACCTAGAGGGGGCTCGGGGTCTCCAACCACGGAGCCCTCGCTGCC
GCCGCTTGCCGCCACTTTTGCGGTCCCGCCTCCTCTTTCGCGGCGGGAAC
TCTTCCCCGTGGCG
back to top