mRNA_L-elsbetiae_contig5423.13659.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5423.13659.1
Unique NamemRNA_L-elsbetiae_contig5423.13659.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 6.600e-64
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            IECF DNPGILMYGNMCVV+TTGIWLLLASY ELPVSTTHSTIGGIVGM+MTYRG DCVVW+EE + FP++ GI+ IVASWV+SPVLS  IAVALFLF+RTFVLRSP S +R+I +FPFLV ATI
Sbjct:    5 IECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHQRAIVVFPFLVTATI 129
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 5.170e-63
Identity = 98/124 (79.03%), Postives = 112/124 (90.32%), Query Frame = 1 
Query:    4 ECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            ECFEDNPGILMYGNMCVV+TTG WLLLAS+ ELPVSTTHSTIGGIVGM++TYRGPDCVVW+E+ + FP++ GI+ IVASWV+SPVLS  IAVALFLF+RTFVLRSP S KR+I +FPFLV ATI
Sbjct:   91 ECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHKRAIVVFPFLVTATI 214
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 7.800e-62
Identity = 95/125 (76.00%), Postives = 111/125 (88.80%), Query Frame = 1 
Query:    1 IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            IECFEDNPGILMYGNMCVV+TTGIWLLLAS+ ELPVSTTHST+GGIVGM+MTYRG DCVVW+EE + FP++ G++ IVASW +SP+ S  IAVALFLF+RTFVLRSP + KR+I +FPFLV ATI
Sbjct:   89 IECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIAVALFLFMRTFVLRSPDAHKRAINVFPFLVTATI 213
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.270e-55
Identity = 87/125 (69.60%), Postives = 105/125 (84.00%), Query Frame = 1 
Query:    1 IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            + CF DNPGILMYGNMCVV+T+G WLLLAS+ ELPVSTTH+T+GGIVGM+MTYRG DCVVW+EE E FP++ G++ IVASW +SPVLS  IAVAL+ F+RTFVLR+  S K++I IFP LV  TI
Sbjct:   97 VGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIAVALYFFMRTFVLRADQSQKKAINIFPCLVTVTI 221
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 4.010e-54
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = 1 
Query:    1 IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            IECF DNPGILMYGNMCVV+T GIWLLLAS+ ELPVSTTHSTIGGIVGM+MTYRG DCVVW+EE + FP++ G+  IV SW + PVLSG +A  LF  VR  VLRS H+  RS+ +FP LV  TI
Sbjct:   90 IECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVATLLFFVVRALVLRSEHALNRSMIVFPLLVTVTI 214
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: D8LJQ4_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 5.720e-53
Identity = 76/125 (60.80%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:    1 IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            +ECF DNPG+LMYG MCVV+TTG+WLLLASYL LPVSTTH+TIG ++GM++ Y G  CVVWF+E+++FP+V G+A I  SWV+SP+ SG +++ +FL VR FVLRSP++  RS  +FP LV+  I
Sbjct:   29 VECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVSLLVFLTVRAFVLRSPNAFGRSFWVFPILVMVAI 153
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 7.230e-50
Identity = 79/125 (63.20%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:    1 IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            +ECF DNPGILMYG MCVV+TTG+WLLLASYLELPVSTTHSTIG I+GM++ Y G  CVVW++E++ FP+  G+A I  SWV+SP+ SG  ++ +FL VR FVLRSP++  RS  +FP LV+ TI
Sbjct:   50 VECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSGVASLLVFLTVRAFVLRSPNAFGRSFWVFPVLVMVTI 174
[Close]
BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: D8LJP9_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.210e-45
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1 
Query:    1 IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            + CF DNPG+LMYG MCV++TT +WLLLASYLELPVS T STI  IVGM++ Y G  CVVW  E+E FP   G+  I+  W++SP+++G  +  +FL +RTFVLRSPH+ +RS  +FP LV+  +
Sbjct:    7 VSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSFWVFPVLVMIIV 131
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: A0A6S9IV20_HETAK (Phosphate transporter n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IV20_HETAK)

HSP 1 Score: 152 bits (383), Expect = 3.030e-41
Identity = 68/125 (54.40%), Postives = 95/125 (76.00%), Query Frame = 1 
Query:    1 IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            I+CF D+  +LMYG  CV+  TG+WLLLA++L++PVSTTHS +GGI+GM++  +G  CVVW  +T+TFP+V G++ IV SW +SP+ SG  A ALFLF RTF+LRS +S  R+I  +P L+ +TI
Sbjct:   88 IDCFMDDGPVLMYGMCCVIFCTGLWLLLATFLKMPVSTTHSVVGGIIGMTIAAKGGSCVVWHADTDTFPYVKGVSAIVVSWFLSPIFSGVGAAALFLFCRTFILRSENSYNRAIYFYPLLLGSTI 212
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BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Match: A0A7R9T173_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T173_9CHLO)

HSP 1 Score: 144 bits (362), Expect = 5.390e-41
Identity = 61/124 (49.19%), Postives = 92/124 (74.19%), Query Frame = 1 
Query:    4 ECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMSMTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVRTFVLRSPHSAKRSITIFPFLVIATI 375
            +CF D+PG+LMYG +CV+ +  IWL++AS+LE+PVSTTHS +GG++GM+M  RG  CVVW  +++TFP++ G+A IV SW++SP++SG  +   FL +R  V+RS +S  R+   FP L+  T+
Sbjct:   16 DCFNDDPGLLMYGCLCVIFSVAIWLVVASFLEMPVSTTHSCVGGMIGMTMVARGSSCVVWSAKSDTFPYIKGVAAIVVSWLLSPIVSGGFSFVFFLTLRALVMRSQNSYARARLAFPVLLACTL 139
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5423.13659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNL8_9PHAE6.600e-6480.00Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI5.170e-6379.03Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A6H5JNE7_9PHAE7.800e-6276.00Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FWT9_ECTSI3.270e-5569.60Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI4.010e-5468.80Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ4_ECTSI5.720e-5360.80High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ6_ECTSI7.230e-5063.20Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJP9_ECTSI3.210e-4555.20High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A6S9IV20_HETAK3.030e-4154.40Phosphate transporter n=3 Tax=Heterosigma akashiwo... [more]
A0A7R9T173_9CHLO5.390e-4149.19Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5423contigL-elsbetiae_contig5423:2750..3421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue5.2e-52
Seed eggNOG ortholog2880.D7G0K9
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.4142225-CDS-L-elsbetiae_contig5423:2749..29651622816567.4142225-CDS-L-elsbetiae_contig5423:2749..2965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5423 2750..2965 +
1691683652.597862-CDS-L-elsbetiae_contig5423:2749..29651691683652.597862-CDS-L-elsbetiae_contig5423:2749..2965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5423 2750..2965 +
1622816567.4251742-CDS-L-elsbetiae_contig5423:3262..34211622816567.4251742-CDS-L-elsbetiae_contig5423:3262..3421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5423 3263..3421 +
1691683652.6084044-CDS-L-elsbetiae_contig5423:3262..34211691683652.6084044-CDS-L-elsbetiae_contig5423:3262..3421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5423 3263..3421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5423.13659.1prot_L-elsbetiae_contig5423.13659.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5423 2750..3421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5423.13659.1

>prot_L-elsbetiae_contig5423.13659.1 ID=prot_L-elsbetiae_contig5423.13659.1|Name=mRNA_L-elsbetiae_contig5423.13659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
IECFEDNPGILMYGNMCVVHTTGIWLLLASYLELPVSTTHSTIGGIVGMS
MTYRGPDCVVWFEETETFPFVDGIAGIVASWVISPVLSGFIAVALFLFVR
TFVLRSPHSAKRSITIFPFLVIATI
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mRNA from alignment at L-elsbetiae_contig5423:2750..3421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5423.13659.1 ID=mRNA_L-elsbetiae_contig5423.13659.1|Name=mRNA_L-elsbetiae_contig5423.13659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig5423:2750..3421+ (Laminarionema elsbetiae ELsaHSoW15)
ATTGAGTGCTTCGAGGACAACCCGGGCATCCTGATGTATGGCAACATGTG
CGTCGTGCACACCACCGGAATCTGGCTCCTGCTGGCCTCTTACCTCGAGC
TTCCCGTGTCCACCACACACTCCACCATCGGAGGCATCGTCGGGATGTCC
ATGACCTACCGTGGCCCGGACTGCGTCGTGTGGTTCGAGGAGACCGAGAC
TTTCCCCTTTGTGGACGTGAGTACGCCCTTACCCATGTATATACATACCT
GTGGGACCGTTGCTGTCAACCTAAAACCGGGCCTTGACTGATCGGTCTGT
TCTTCGGTGCTCGTAAAGTCGTCGTTAGCAAAAAATGCCTACATTGTTTC
TCACACCGTTGCTCACCATCCTCAAATCAGTCCATTGTACACACGATTTA
CTCCCGACCCCCTTCTGGCTTACGTGCTGCGCCCCCCGCCTCACTGCTCC
CGAAAAAAAAACTTTCCCACCAACCACCGAACGGCACCGATCGACCGATT
CGGCGAATCACAGGGTATTGCCGGCATCGTGGCCTCTTGGGTGATCTCCC
CCGTCCTGTCGGGGTTCATCGCCGTCGCCCTGTTCCTGTTCGTGAGAACC
TTCGTGCTGCGGTCGCCCCACTCCGCCAAGAGATCCATCACCATCTTCCC
CTTCCTGGTGATCGCTACCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5423:2750..3421+

>mRNA_L-elsbetiae_contig5423.13659.1 ID=mRNA_L-elsbetiae_contig5423.13659.1|Name=mRNA_L-elsbetiae_contig5423.13659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig5423:2750..3421+ (Laminarionema elsbetiae ELsaHSoW15)
ATTGAGTGCTTCGAGGACAACCCGGGCATCCTGATGTATGGCAACATGTG
CGTCGTGCACACCACCGGAATCTGGCTCCTGCTGGCCTCTTACCTCGAGC
TTCCCGTGTCCACCACACACTCCACCATCGGAGGCATCGTCGGGATGTCC
ATGACCTACCGTGGCCCGGACTGCGTCGTGTGGTTCGAGGAGACCGAGAC
TTTCCCCTTTGTGGACATTGAGTGCTTCGAGGACAACCCGGGCATCCTGA
TGTATGGCAACATGTGCGTCGTGCACACCACCGGAATCTGGCTCCTGCTG
GCCTCTTACCTCGAGCTTCCCGTGTCCACCACACACTCCACCATCGGAGG
CATCGTCGGGATGTCCATGACCTACCGTGGCCCGGACTGCGTCGTGTGGT
TCGAGGAGACCGAGACTTTCCCCTTTGTGGACGGTATTGCCGGCATCGTG
GCCTCTTGGGTGATCTCCCCCGTCCTGTCGGGGTTCATCGCCGTCGCCCT
GTTCCTGTTCGTGAGAACCTTCGTGCTGCGGTCGCCCCACTCCGCCAAGA
GATCCATCACCATCTTCCCCTTCCTGGTGATCGCTACCATCGGTATTGCC
GGCATCGTGGCCTCTTGGGTGATCTCCCCCGTCCTGTCGGGGTTCATCGC
CGTCGCCCTGTTCCTGTTCGTGAGAACCTTCGTGCTGCGGTCGCCCCACT
CCGCCAAGAGATCCATCACCATCTTCCCCTTCCTGGTGATCGCTACCATC
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