mRNA_L-elsbetiae_contig5422.13658.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 274 bits (700), Expect = 1.290e-88 Identity = 142/178 (79.78%), Postives = 152/178 (85.39%), Query Frame = 2 Query: 80 QVGLVNGIRGVVV-----DDAPPPKLPLYVVVKFRGYSGGEWSAQERYRGCVPISPVDTTWEDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAVTGNQ 598 QVGLVNGIRG VV DDAPPPKLPLYVVVKF GYSGGEWS+QERYR CVPISPVDTTW+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEEVRL +++ STRV+ YT MGVF+AV GNQ Sbjct: 118 QVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEVRLGELAQ-STRVK--YTDMGVFSAVAGNQ 290
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 274 bits (700), Expect = 2.550e-86 Identity = 142/178 (79.78%), Postives = 152/178 (85.39%), Query Frame = 2 Query: 80 QVGLVNGIRGVVV-----DDAPPPKLPLYVVVKFRGYSGGEWSAQERYRGCVPISPVDTTWEDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAVTGNQ 598 QVGLVNGIRG VV DDAPPPKLPLYVVVKF GYSGGEWS+QERYR CVPISPVDTTW+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEEVRL +++ STRV+ YT MGVF+AV GNQ Sbjct: 292 QVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEVRLGELAQ-STRVK--YTDMGVFSAVAGNQ 464
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 267 bits (683), Expect = 1.530e-83 Identity = 139/174 (79.89%), Postives = 149/174 (85.63%), Query Frame = 2 Query: 80 QVGLVNGIRGVVV-----DDAPPPKLPLYVVVKFRGYSGGEWSAQERYRGCVPISPVDTTWEDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAV 586 QVGLVNGIRG VV DDAPPPKLPLYVVVKF GYSGGEWS+QERYR CVPISPVDTTW+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEEVRL +++ STRV+ YT MGVF+AV Sbjct: 9 QVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEVRLGELAQ-STRVK--YTDMGVFSAV 177
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 249 bits (635), Expect = 1.220e-71 Identity = 129/171 (75.44%), Postives = 136/171 (79.53%), Query Frame = 2 Query: 80 QVGLVNGIRGVVV-----DDAPPPKLPLYVVVKFRGYSGGEWSAQERYRGCVPISPVDTTWEDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVF 577 QVGLVNGIRG VV DDAPPPKLPLYVVVKF GYSGGEWS+QERYR CVPISPVDTTW+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEE S A R ++ G F Sbjct: 1423 QVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEA-----SDALDRQNAIFDESGHF 1586
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE) HSP 1 Score: 169 bits (429), Expect = 5.120e-50 Identity = 91/117 (77.78%), Postives = 99/117 (84.62%), Query Frame = 2 Query: 248 EDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAVTGNQ 598 EDGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEEVRL +++ STRV+ YT MGVF+AV GNQ Sbjct: 8 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEVRLGELAQ-STRVK--YTDMGVFSAVAGNQ 119
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE) HSP 1 Score: 168 bits (426), Expect = 2.330e-48 Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 2 Query: 245 WEDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAVTG 592 W+DGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDLIVE MSFD+IGNLGNS+TM LQEEVRL +++ +TRVR YT MGVF AV G Sbjct: 2 WQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGR--LQEEVRLGELAR-TTRVR--YTDMGVFGAVAG 112
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE) HSP 1 Score: 164 bits (414), Expect = 6.730e-47 Identity = 88/115 (76.52%), Postives = 97/115 (84.35%), Query Frame = 2 Query: 248 EDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAVTG 592 +DGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEEVRL +++ STRV+ YT MGVF+AV G Sbjct: 72 KDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEVRLGELAQ-STRVK--YTDMGVFSAVAG 181
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.310e-46 Identity = 88/113 (77.88%), Postives = 96/113 (84.96%), Query Frame = 2 Query: 248 EDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAV 586 EDGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEEVRL +++ STRV+ YT MGVF+AV Sbjct: 6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEVRLGELAQ-STRVK--YTDMGVFSAV 113
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE) HSP 1 Score: 166 bits (419), Expect = 3.540e-46 Identity = 89/117 (76.07%), Postives = 98/117 (83.76%), Query Frame = 2 Query: 248 EDGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAVTGNQ 598 EDGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEEVRL +++ STRV+ YT MGVF+AV G + Sbjct: 6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEVRLGELAQ-STRVK--YTDMGVFSAVAGRK 117
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE) HSP 1 Score: 163 bits (413), Expect = 7.480e-43 Identity = 88/114 (77.19%), Postives = 96/114 (84.21%), Query Frame = 2 Query: 251 DGGMQVRTQLPLRLCWAITMHKSQGQTLEKAVIDVGPKGTCTGHTFVCLSRAKRLVDLIVEAMSFDKIGNLGNSATMSAMYWLQEEVRLQKVSTASTRVRCLYTGMGVFNAVTG 592 DGG QVRTQLPLRLCWAITMHKSQGQTL KAVID+GPK CTG TFVCLSRAKRLVDL+VE MSFD+IGNLGNS TM A LQEEVRL +++ STRV+ YT MGVF+AV G Sbjct: 350 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKAR--LQEEVRLGELAQ-STRVK--YTDMGVFSAVAG 458 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5422.13658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5422.13658.1 >prot_L-elsbetiae_contig5422.13658.1 ID=prot_L-elsbetiae_contig5422.13658.1|Name=mRNA_L-elsbetiae_contig5422.13658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp MNPGSVQVGLVNGIRGVVVDDAPPPKLPLYVVVKFRGYSGGEWSAQERYRback to top mRNA from alignment at L-elsbetiae_contig5422:9150..9969+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5422.13658.1 ID=mRNA_L-elsbetiae_contig5422.13658.1|Name=mRNA_L-elsbetiae_contig5422.13658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=820bp|location=Sequence derived from alignment at L-elsbetiae_contig5422:9150..9969+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5422:9150..9969+ >mRNA_L-elsbetiae_contig5422.13658.1 ID=mRNA_L-elsbetiae_contig5422.13658.1|Name=mRNA_L-elsbetiae_contig5422.13658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig5422:9150..9969+ (Laminarionema elsbetiae ELsaHSoW15)back to top |