mRNA_L-elsbetiae_contig542.13652.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig542.13652.1
Unique NamemRNA_L-elsbetiae_contig542.13652.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig542.13652.1 vs. uniprot
Match: D8LPS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS8_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 9.070e-8
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  145 MRWGHSLHRVARDAMEEPWRGNSSRRGQGRTARVRLQRPQQE 270
            MRWGHSLH V R+AMEEPWRG+ +RRG+G  A V ++ P+++
Sbjct:    1 MRWGHSLHTVTREAMEEPWRGDPTRRGRGPAALVTVRHPERK 42
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig542.13652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS8_ECTSI9.070e-859.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig542contigL-elsbetiae_contig542:15709..17287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002320.1
Exons4
Model size288
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig542.13652.1prot_L-elsbetiae_contig542.13652.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig542 15709..17285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816566.731088-CDS-L-elsbetiae_contig542:15708..158101622816566.731088-CDS-L-elsbetiae_contig542:15708..15810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 15709..15810 +
1691683652.1360323-CDS-L-elsbetiae_contig542:15708..158101691683652.1360323-CDS-L-elsbetiae_contig542:15708..15810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 15709..15810 +
1622816566.7417686-CDS-L-elsbetiae_contig542:16493..165521622816566.7417686-CDS-L-elsbetiae_contig542:16493..16552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 16494..16552 +
1691683652.1456766-CDS-L-elsbetiae_contig542:16493..165521691683652.1456766-CDS-L-elsbetiae_contig542:16493..16552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 16494..16552 +
1622816566.7526262-CDS-L-elsbetiae_contig542:16848..169511622816566.7526262-CDS-L-elsbetiae_contig542:16848..16951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 16849..16951 +
1691683652.1552758-CDS-L-elsbetiae_contig542:16848..169511691683652.1552758-CDS-L-elsbetiae_contig542:16848..16951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 16849..16951 +
1622816566.763401-CDS-L-elsbetiae_contig542:17264..172851622816566.763401-CDS-L-elsbetiae_contig542:17264..17285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 17265..17285 +
1691683652.1655517-CDS-L-elsbetiae_contig542:17264..172851691683652.1655517-CDS-L-elsbetiae_contig542:17264..17285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 17265..17285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig542.13652.1

>prot_L-elsbetiae_contig542.13652.1 ID=prot_L-elsbetiae_contig542.13652.1|Name=mRNA_L-elsbetiae_contig542.13652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
SAPGTKGHSYRKTINMTRDVKRAYRTIRGGKTSEVLEHVKKQTRLVTRMR
WGHSLHRVARDAMEEPWRGNSSRRGQGRTARVRLQRPQQEGLATT
back to top

mRNA from alignment at L-elsbetiae_contig542:15709..17287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig542.13652.1 ID=mRNA_L-elsbetiae_contig542.13652.1|Name=mRNA_L-elsbetiae_contig542.13652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1579bp|location=Sequence derived from alignment at L-elsbetiae_contig542:15709..17287+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCTCCTGGCACAAAGGGCCACAGCTATCGCAAAACAATCAACATGAC
GAGAGATGTGAAGCGGGCCTATCGAACGATACGAGGCGGGAAAACGTCAG
AGGTGCGCCCTGAAGGTTCAAGACTTGGCTGTACAGTAAGGGTGCAAACT
TCATCGCGATTCGCCTTTTTATAGTCTAGATAGACTAGTCTTCTAGATAG
AGACATGAAGTTCATGAAGTCTAGATATGGAGTCTAGATTAGATACAGGG
TCTTAGATATGGTATCTTTGTATGTATTCTACCTAGTCCACATCTGTATC
TTCTAGGTAGGATTGTATCTATCTGTCTAGATTGCTATATATATTTCGGA
CGTCGTTGCGCTCGTGTAACATAGCCTAGACTCATAGATACACTCTGGTG
TGCGATACGACTTGTTCTGTGCTTCACGGTAGGATCTAAAGCCCGTAGTC
TATACAGTAGTAGATGCGGTATATAACAGCTGGGGTGGAGTCACGAATAG
CACTAAACTCCCTACTTCCCGTGGGGGGTATGGGTGTGTATTTACTGTAG
TTCTGCTCGTCAAAGTACTATTTACTACTTCGTATTAGATAGTCTGCATC
TACTTTGTAGAGAGTGGAGCGCGTTTGTTCGAGACACCTCCCTTCAATAA
CTGCTGTGCGTCTTGTTATCTGTTGCTGTCGGCTTGAGCCCCTGGCACTG
TCTGCAGTGGTACCCTACATTTTGGAACAGAATGATAATAATGTAGCGCG
ACAACTACCCCTTGGCTATCGACGCGATCCCGCAGGTGCTCGAGCATGTC
AAGAAGCAAACACGTCTGGTGACGCGGATGCGATGGGGACACAGGTAACA
TCGTGTTCCATGAGCACCGATTTATTTGAACCAAGACCTCACAGCTGTGC
GTGTGTACAGCGTATTTTGCAGTCTAGTATCTGGTGGAACGGCGCTTGTA
GATAATCATTAACATGCGGAACAGGAAGTGACCTCGGAGCGACTGTCATG
TCCAGGTGAGTGTGTTGTCTCGCCAACGGTGCGTAGTACACATGCAGTAG
CAGCATCGATGATGCGTAGAGTTGTAAGGTTACGTGCTCAGAAGTACATT
TACATTTACAACAGACACCCATGCATGCTACCTTGTGTAGCCTTCACAGG
GTTGCACGAGATGCTATGGAAGAACCTTGGCGCGGAAACTCTAGTCGTCG
AGGCCAAGGACGAACGGCTCGAGTTAGACTACAGCGTCCCCAGGTAAGCT
TGGACTTTGTCGGTTCCCCCTTCTGGAGAACTGTGCGTTGTACACCTCGG
TCACACGATGGCGAAATCACCTCTCTGCTGCTGTGCGTGTGAACAACATA
CATTTAGTACATAGTATAGTCAGGAGTAGTAGCTCATCGTAGTGGTGGGC
ATGTTTCTTCAACTAGCCCCTCTTTCCGACAGGAAGTATTATTGGAACGT
GGCAGACTTCCTGGCACGGGTCACATCATTTCTTCGATCCTCGAAGGGTC
ACTTACGCCGAGGTACTTGGGTCAAAAATGTGTTATTGCAATCCTTACAC
ACACAGCAGGAAGGTCTAGCCACAACCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig542:15709..17287+

>mRNA_L-elsbetiae_contig542.13652.1 ID=mRNA_L-elsbetiae_contig542.13652.1|Name=mRNA_L-elsbetiae_contig542.13652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig542:15709..17287+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCTCCTGGCACAAAGGGCCACAGCTATCGCAAAACAATCAACATGAC
GAGAGATGTGAAGCGGGCCTATCGAACGATACGAGGCGGGAAAACGTCAG
AGTCCGCTCCTGGCACAAAGGGCCACAGCTATCGCAAAACAATCAACATG
ACGAGAGATGTGAAGCGGGCCTATCGAACGATACGAGGCGGGAAAACGTC
AGAGGTGCTCGAGCATGTCAAGAAGCAAACACGTCTGGTGACGCGGATGC
GATGGGGACACAGGTGCTCGAGCATGTCAAGAAGCAAACACGTCTGGTGA
CGCGGATGCGATGGGGACACAGCCTTCACAGGGTTGCACGAGATGCTATG
GAAGAACCTTGGCGCGGAAACTCTAGTCGTCGAGGCCAAGGACGAACGGC
TCGAGTTAGACTACAGCGTCCCCAGCCTTCACAGGGTTGCACGAGATGCT
ATGGAAGAACCTTGGCGCGGAAACTCTAGTCGTCGAGGCCAAGGACGAAC
GGCTCGAGTTAGACTACAGCGTCCCCAGCAGGAAGGTCTAGCCACAACCC
AGGAAGGTCTAGCCACAACC
back to top