mRNA_L-elsbetiae_contig5413.13644.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5413.13644.1
Unique NamemRNA_L-elsbetiae_contig5413.13644.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5413.13644.1 vs. uniprot
Match: D7G274_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G274_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 3.970e-39
Identity = 74/101 (73.27%), Postives = 85/101 (84.16%), Query Frame = -1 
Query:  196 TPQEILGHPWLGRAALGIGDRTLRSVDPRGHRHRHRRSRLPRYGAPAPTNPEALQKFWSARRRLKAIMLSLMSGLVEVENEQCNEQEQFQALMELRLEMEE 498
            TPQE+L HPWL  A+LG GDRTLR+++PRGH HRHR  R PR+G PAPTNPEALQKFWSARRRLK  MLSLM GLVE+E E+ NE+E  +ALMELRLEM+E
Sbjct:  279 TPQEVLQHPWLELASLGGGDRTLRTMNPRGHMHRHRAERHPRHGEPAPTNPEALQKFWSARRRLKTCMLSLMCGLVEIEAEEYNEEESLRALMELRLEMDE 379
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BLAST of mRNA_L-elsbetiae_contig5413.13644.1 vs. uniprot
Match: A0A6H5JP20_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP20_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.700e-36
Identity = 82/153 (53.59%), Postives = 95/153 (62.09%), Query Frame = -1 
Query:   40 TPQEILGHPWLGRAALGIGDRTLRSVDPRGHRHRHRRSRLPRYGAPAPTNPEALQKFWSARRRLKAIMLSLMSGLVEVENEQCNEQEQFQALMELRLEMEEXXXXXXXXXXXXXXXXXXXSSLPPLPPQSGLAAAGLPAELLPGSSSEPPPTR 498
            TPQE+L HPWL  A+L  GDRTLR+++PR H HRHR  R PRYG P PTN EALQ FWSARRRLKA ML+LM GLVE E E  NE E  + +ME  L+M+E                       P PP +GLA AG+PA LLP S  +  PTR
Sbjct:  442 TPQEVLQHPWLELASLRGGDRTLRTMNPRCHMHRHRTERHPRYGEPTPTNAEALQNFWSARRRLKACMLALMCGLVETEVEGYNEGEGLRTMMETNLKMDERGIKWGA----------------PPPPPAGLAGAGIPAVLLPNSLFQSTPTR 578
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5413.13644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G274_ECTSI3.970e-3973.27cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JP20_9PHAE2.700e-3653.59cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5413contigL-elsbetiae_contig5413:6765..7263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size499
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816566.4633865-CDS-L-elsbetiae_contig5413:6764..72621622816566.4633865-CDS-L-elsbetiae_contig5413:6764..7262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5413 6765..7262 +
1691683652.003593-CDS-L-elsbetiae_contig5413:6764..72621691683652.003593-CDS-L-elsbetiae_contig5413:6764..7262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5413 6765..7262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5413.13644.1prot_L-elsbetiae_contig5413.13644.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5413 6765..7262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5413.13644.1

>prot_L-elsbetiae_contig5413.13644.1 ID=prot_L-elsbetiae_contig5413.13644.1|Name=mRNA_L-elsbetiae_contig5413.13644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
LLLPPALAGATDLAGGRRLGRRARQQLRRQPSRGEPRLRRQGGQRGGRGR
RRRRLRRRLRSLLLPFLHLQAELHQRLELLLLVALLVFDLDEPGHEGQHD
GLEPAAGGPELLQRLRVGRGRRAVPREPAAAMPVPVPARVHRAQRAVPDA
QRRAPQPGVPEDLLRR
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mRNA from alignment at L-elsbetiae_contig5413:6765..7263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5413.13644.1 ID=mRNA_L-elsbetiae_contig5413.13644.1|Name=mRNA_L-elsbetiae_contig5413.13644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=499bp|location=Sequence derived from alignment at L-elsbetiae_contig5413:6765..7263+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTTCTCCCGCCTGCTCTCGCCGGGGCGACGGACCTTGCGGGTGGGCG
GCGGCTCGGACGAAGAGCCCGGCAGCAGCTCCGCCGGCAGCCCAGCCGCG
GCGAGCCCAGACTGCGGCGGCAGGGGGGGCAGCGAGGAGGGCGAGGGAGG
AGGAGGCGGCGGCTTCGCCGCCGCCTCCGCTCTCTTCTTCTTCCGTTCCT
CCATCTCCAGGCGGAGCTCCATCAGCGCTTGGAACTGCTCCTGCTCGTTG
CACTGCTCGTTTTCGACCTCGACGAGCCCGGACATGAGGGACAGCATGAT
GGCCTTGAGCCTGCGGCGGGCGGACCAGAACTTCTGCAGCGCCTCCGGGT
TGGTCGGGGCCGGCGCGCCGTACCGCGGGAGCCTGCTGCGGCGATGCCGG
TGCCGGTGCCCGCGCGGGTCCACCGAGCGCAGCGTGCGGTCCCCGATGCC
CAGCGCCGCGCGCCCCAGCCAGGGGTGCCCGAGGATCTCCTGCGGCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5413:6765..7263+

>mRNA_L-elsbetiae_contig5413.13644.1 ID=mRNA_L-elsbetiae_contig5413.13644.1|Name=mRNA_L-elsbetiae_contig5413.13644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig5413:6765..7263+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTTCTCCCGCCTGCTCTCGCCGGGGCGACGGACCTTGCGGGTGGGCG
GCGGCTCGGACGAAGAGCCCGGCAGCAGCTCCGCCGGCAGCCCAGCCGCG
GCGAGCCCAGACTGCGGCGGCAGGGGGGGCAGCGAGGAGGGCGAGGGAGG
AGGAGGCGGCGGCTTCGCCGCCGCCTCCGCTCTCTTCTTCTTCCGTTCCT
CCATCTCCAGGCGGAGCTCCATCAGCGCTTGGAACTGCTCCTGCTCGTTG
CACTGCTCGTTTTCGACCTCGACGAGCCCGGACATGAGGGACAGCATGAT
GGCCTTGAGCCTGCGGCGGGCGGACCAGAACTTCTGCAGCGCCTCCGGGT
TGGTCGGGGCCGGCGCGCCGTACCGCGGGAGCCTGCTGCGGCGATGCCGG
TGCCGGTGCCCGCGCGGGTCCACCGAGCGCAGCGTGCGGTCCCCGATGCC
CAGCGCCGCGCGCCCCAGCCAGGGGTGCCCGAGGATCTCCTGCGGCGTCT
CCTTCTCCCGCCTGCTCTCGCCGGGGCGACGGACCTTGCGGGTGGGCGGC
GGCTCGGACGAAGAGCCCGGCAGCAGCTCCGCCGGCAGCCCAGCCGCGGC
GAGCCCAGACTGCGGCGGCAGGGGGGGCAGCGAGGAGGGCGAGGGAGGAG
GAGGCGGCGGCTTCGCCGCCGCCTCCGCTCTCTTCTTCTTCCGTTCCTCC
ATCTCCAGGCGGAGCTCCATCAGCGCTTGGAACTGCTCCTGCTCGTTGCA
CTGCTCGTTTTCGACCTCGACGAGCCCGGACATGAGGGACAGCATGATGG
CCTTGAGCCTGCGGCGGGCGGACCAGAACTTCTGCAGCGCCTCCGGGTTG
GTCGGGGCCGGCGCGCCGTACCGCGGGAGCCTGCTGCGGCGATGCCGGTG
CCGGTGCCCGCGCGGGTCCACCGAGCGCAGCGTGCGGTCCCCGATGCCCA
GCGCCGCGCGCCCCAGCCAGGGGTGCCCGAGGATCTCCTGCGGCGT
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