mRNA_L-elsbetiae_contig541.13638.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig541.13638.1
Unique NamemRNA_L-elsbetiae_contig541.13638.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: D7FQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ19_ECTSI)

HSP 1 Score: 448 bits (1153), Expect = 9.000e-152
Identity = 223/293 (76.11%), Postives = 254/293 (86.69%), Query Frame = 1
Query:  373 WFSTPLAPGASILLAAALLCTTSAQSPAETGWWPFSKR-PKSPFEDTVPRKAKRQRAKAEREMQEYLAKMRVPVQELIAGLRKGEVGREEFDKRMASFNNEVELATHRIIYGVSDPPDARRLFEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGGGV--GTTAGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRRR-REAVDAQSPQ 1239
            W S PLAPGASILLA AL C+ S  SPAE GWWPFSKR P SPF +T+PR+AK+QRAKAE +M+ YLAKMR+PVQEL+AGLRKGEV REE+DKRM+ FN+EVELATHRII+GVSDPPDARR +EAEHG+CR+TP+AI+ +SALSPL+EIGAGRGHWQR LSEAGA V+SFDKWAT P  G   GTTAG+PQ+GRVLPGDEHA+RLHRDKTLLLVYPPPG+ A+RCL EYRG  L YVGEGRGG NASD FFDGLDAEW+V  +++LDPFPQCFERL+LLRRR R AV A S Q
Sbjct:   55 WDSMPLAPGASILLAVAL-CSVSTDSPAEAGWWPFSKRQPSSPFSNTIPRQAKKQRAKAEVQMRNYLAKMRMPVQELMAGLRKGEVTREEYDKRMSVFNDEVELATHRIIFGVSDPPDARRRYEAEHGNCRYTPEAIRLMSALSPLVEIGAGRGHWQRGLSEAGATVISFDKWATTPSSGNERGTTAGMPQIGRVLPGDEHALRLHRDKTLLLVYPPPGDMALRCLHEYRGDTLVYVGEGRGGANASDEFFDGLDAEWDVENILDLDPFPQCFERLFLLRRRQRTAVGASSQQ 346          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: F2U2F6_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U2F6_SALR5)

HSP 1 Score: 172 bits (435), Expect = 1.950e-46
Identity = 88/203 (43.35%), Postives = 131/203 (64.53%), Query Frame = 1
Query:  622 EVGREEFDKRMASFNNEVELATHRIIYGVSDPPDARRLFEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGGGVGTTAGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRRRREAVDAQ 1230
            ++ REEF +++ +    + L +  IIYG ++   AR+ + A++G  R T DA+  +++ SPLIEIGAG+GHW +AL + G  V++FD  +T          G   V +V PGD   I  +  +TLLLVYPP  + A++C +E+RG  L YVGE RGGVNA+DAFF+ +D +++   + +LDPFP+C ERLY+LRR+ E   AQ
Sbjct:   17 DMSREEFQQQLWALRERINLDSQIIIYGTAER-HARQKYLAKYGCARWTEDALNTIASFSPLIEIGAGQGHWAKALRKLGVDVMAFDNDSTEQ-------PGTAPVSQVRPGDHTKIGWYPRRTLLLVYPPETDMALQCAQEFRGNYLIYVGEARGGVNANDAFFNHVDEQFDCVHIQDLDPFPRCHERLYVLRRKPEHRTAQ 211          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: A0A250XG93_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XG93_9CHLO)

HSP 1 Score: 176 bits (445), Expect = 6.830e-46
Identity = 89/198 (44.95%), Postives = 125/198 (63.13%), Query Frame = 1
Query:  619 GEVGREEFDKRMASFNNEVELATHRIIYGVSDPPDARRLFEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGGGVGTTAGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRRRR 1212
            GE G + F + +     EV+L + +II+GV D P+AR+ +   +G  R T +A+Q + + SPLIEIG G GHWQ+AL+  GA V++FD  +  P        G+  VG V  G+E  IR H  +TLLLVYP P +  + CL EYRG  L YVGE RGG+N ++ FF+ L+ EW    VV LDPFP  +E+LY+L+R++
Sbjct:  185 GERGEKWFQEELRKLEPEVDLQSQKIIFGV-DEPNARKSYLERYGCTRWTEEALQVIKSFSPLIEIGGGHGHWQKALTSIGADVLAFDDGSALP------VLGMDNVGEVQKGNEKEIRRHPRRTLLLVYPGPTDMGLNCLNEYRGRYLLYVGEPRGGINGNEQFFNELEREWTCERVVPLDPFPDGYEQLYILKRKQ 375          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: A0A061SI58_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SI58_9CHLO)

HSP 1 Score: 167 bits (423), Expect = 1.760e-43
Identity = 91/189 (48.15%), Postives = 120/189 (63.49%), Query Frame = 1
Query:  643 DKRMASFNNEVELATHRIIYGVSDPPDARRLFEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGGGVGTTAGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRRR 1209
            ++R+ +F +EV+  T  I+YGV +   AR  + A++G    + +AI+AV+  SPLIEIGAG+G WQ  LS  GA +++FD  A  P         +P VG V  GD   +R HR +TLLL YP  GE A +CL  Y G  L YVGEGRGGVNA+D FF  L+AEW    V++L PFP  FERL++LRRR
Sbjct:  126 ERRLGAFRDEVDQETQIILYGVRER-GARARYMAKYGCAAWSEEAIRAVAGFSPLIEIGAGKGQWQAELSRRGADIIAFDNGAAVP------CPELPAVGEVRHGDHRELRRHRGRTLLLCYPE-GEMAEQCLELYGGEWLLYVGEGRGGVNATDEFFRRLEAEWVCEQVIQLQPFPGNFERLFVLRRR 306          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: A0A7S1RWX2_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RWX2_ALECA)

HSP 1 Score: 153 bits (386), Expect = 1.610e-38
Identity = 78/179 (43.58%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  679 LATHRIIYGVSDPPDARRLFEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGGGVGTTAGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRRRRE 1215
            LA HR++Y    P + RR  E E+G+ + T  A+ A  A+SPL+E+GAGRG WQRAL+  GA V+++D  ++       T  G+  +G+V  G E  +R H D+ +LLVYP PG  A  CL  Y G  L YVGEGRGGVN  DAFFD + A+W++     +D  P  +E +Y+L+R ++
Sbjct:  127 LAAHRLLYPTLSPEELRRRRE-EYGAVKWTEAALHAAVAVSPLVEVGAGRGQWQRALAGLGADVLAYDDMSSPS-----TRLGL--IGQVSQGSEDVVRRHADRAMLLVYPNPGPMAYNCLGNYAGDTLVYVGEGRGGVNGDDAFFDAVSADWKLIRSEPVDRLPGGYEHMYILQRLKK 297          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: A0A835Z4B6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.010e-37
Identity = 91/209 (43.54%), Postives = 119/209 (56.94%), Query Frame = 1
Query:  682 ATHRIIYGVSDPPDARRLFEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSF--------------DKWATNPGGGVGTTAGIPQVGRVLPGDEHAIRLHRDKTL--------LLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRRR-REAVDAQSPQ 1239
            AT RI YGV+D   AR  +E + G  R T  A+ A +A SPLIE      +    L+ A AA   F              D  A + G      A +P VG+V PGDE A+  H D+TL        LLVYPPPG+ A+RC+R Y G  + YVGEGRGGVNA +AFF  L+  W+V  V+ L+PFP+CFER+++LRR+ ++A D  S Q
Sbjct:  126 ATQRIAYGVTDD-GARARYERDFGCARWTEAALAAAAAYSPLIEAS----NAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRKPQQAADPPSKQ 329          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: A0A7S4Q4L8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q4L8_9DINO)

HSP 1 Score: 145 bits (365), Expect = 8.990e-36
Identity = 75/156 (48.08%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  679 LATHRIIY-GVSDPPDARRLFEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGGGVGTTAGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEV 1143
            L  HR++Y G+S  P+  R    EHG+ + T  A+Q   A+SPL+E+GAGRG WQ+AL+E GA V+++D  ++        T  +  +G+V  G+E  +R H D+ LLLVYP PG  A +CL  Y G AL YVGEGRGGVN  DAFFD L AEW +
Sbjct:  130 LEAHRLLYPGLS--PEELRTRRQEHGAVKWTEKALQVAVAMSPLLEVGAGRGQWQKALTERGANVLAYDDMSS-------PTVRLGLIGQVNRGNEEVVRRHADRALLLVYPNPGPMARKCLENYAGDALVYVGEGRGGVNGDDAFFDLLSAEWRL 276          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: A9V137_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V137_MONBE)

HSP 1 Score: 140 bits (353), Expect = 5.930e-34
Identity = 77/194 (39.69%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  673 VELATHRIIYGVSDPPDARRL----------------FEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGGGVGTTAGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRR 1206
             E+    I  G S+P D +R                 +   +G  R T  A++ +   SP++E+GAG+G WQRAL+EAGA VV+FD  ++              VG+V  GDE  +  +  +TLLLVYPP  + A R L  Y+G  L YVGE RGGVNA++ FFD L+A+W+      L PF +C+ERLY+ RR
Sbjct:   89 AEMREKFIKLGASEPDDLKRAELYAKFREDVLRDTQAYLDTYGCARWTDSALELIKEFSPIVELGAGQGQWQRALTEAGANVVAFDNESS-------LQPSNQPVGKVYSGDEQKLGWYPYRTLLLVYPPDSDMAQRALDRYKGRYLIYVGEARGGVNANEEFFDTLEADWDCVHRENLAPFSRCYERLYVFRR 275          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: A0A2R5GST6_9STRA (MFS_1_like domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GST6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.740e-32
Identity = 82/242 (33.88%), Postives = 139/242 (57.44%), Query Frame = 1
Query:  490 KSPFEDTVPRKAKRQRAKAEREMQEYLAKMRVPVQELIAGLRKGEVGREEFDKRMASFNNEVELATHRIIYGVS-DPPDARRLFEAEHGSCRHTPDAIQAVSALSPLIEIGAGRGHWQRALSEAGAA-VVSFDKWATNPGGGVGTTAGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRRR 1209
            KSPF      K  + R   ERE+ +  A+ R  +  L   + +GE+   E+   +      V     R+I+GVS +   AR  +   +G  + +  A+Q ++AL P++E+GAG G W++ L++     ++++D ++      + +     + G VL G+E  +R HRD+TLLLV PPP E A +C+  YRG  L YVGEGRGG +A   FF+ L+++WEV  ++++ PF +C+E+ ++L+R+
Sbjct:  465 KSPFMYPELEKGIKVREARERELLDLRARARNRIFLLQERVGRGELSEREYRMEIHKLKEAVNRDAQRLIFGVSPEQAHARDEYLQAYGCVKWSEQAMQKIAALGPIVELGAGYGQWRQELAQQHKVDIIAYDDYSQLY---LPSEKAREETG-VLEGNETVLRKHRDRTLLLVCPPPNEMASKCMSAYRGDRLVYVGEGRGGAHADSDFFNTLESKWEVEEIIDVLPFSECYEKCFILKRK 702          
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Match: A0A139AZJ9_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AZJ9_GONPJ)

HSP 1 Score: 133 bits (335), Expect = 2.850e-32
Identity = 78/211 (36.97%), Postives = 112/211 (53.08%), Query Frame = 1
Query:  625 VGREEFDKRMASFNNEVELATHRIIYGVSDPPDARRLFEAEHGSCRHTPDAIQAVSALS-PLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGG---------------GVGTTAGIPQVGRVLPGDEHAIRLHRD-KTLLLVYPPPGETAVRCLREYRGGALAYVGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRR 1206
            + R  F+ R+ +   EVE  + RI+YG + P  +RR + + +G  + T DA+ A++AL  P++E+GAG GHW++AL  AG  VV++D W+  PG                G         VG+VL G       H   + LLLVYP P   A   L  Y G  L YVGE  GG NA+  FF  L   W+V  V+E++PF    ER+++L+R
Sbjct:    8 MARSVFEGRLDAMRKEVEKESERILYGPTAP--SRRAYLSSYGCTKPTTDAVSAIAALGQPIVEMGAGVGHWEKALRTAGVDVVAYDDWSAVPGADDEPVAKGRATEHSPGPCENESAALVGKVLHGTPDVTLPHNPGRALLLVYPGPDAMAEDSLTHYSGSTLVYVGENAGGANATPRFFQELQRAWKVVKVMEVEPFSGGCERMWILKR 216          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig541.13638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ19_ECTSI9.000e-15276.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F2U2F6_SALR51.950e-4643.35Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A250XG93_9CHLO6.830e-4644.95Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A061SI58_9CHLO1.760e-4348.15Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A7S1RWX2_ALECA1.610e-3843.58Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A835Z4B6_9STRA2.010e-3743.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4Q4L8_9DINO8.990e-3648.08Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A9V137_MONBE5.930e-3439.69Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A2R5GST6_9STRA2.740e-3233.88MFS_1_like domain-containing protein n=1 Tax=Honda... [more]
A0A139AZJ9_GONPJ2.850e-3236.97Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig541contigL-elsbetiae_contig541:3652..6661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue3.1e-17
Seed eggNOG ortholog157072.XP_008870195.1
Hectar predicted targeting categorymitochondrion
EggNOG OGs2CY15@1,2S189@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_007820.1
Exons3
Model size1724
Cds size1071
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig541.13638.1prot_L-elsbetiae_contig541.13638.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig541 3823..6179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.8376608-UTR-L-elsbetiae_contig541:3651..38221622816565.8376608-UTR-L-elsbetiae_contig541:3651..3822Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig541 3652..3822 +
1691683651.520715-UTR-L-elsbetiae_contig541:3651..38221691683651.520715-UTR-L-elsbetiae_contig541:3651..3822Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig541 3652..3822 +
1622816565.8933384-UTR-L-elsbetiae_contig541:6179..66611622816565.8933384-UTR-L-elsbetiae_contig541:6179..6661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig541 6180..6661 +
1691683651.5618005-UTR-L-elsbetiae_contig541:6179..66611691683651.5618005-UTR-L-elsbetiae_contig541:6179..6661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig541 6180..6661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.8539827-CDS-L-elsbetiae_contig541:3822..42751622816565.8539827-CDS-L-elsbetiae_contig541:3822..4275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig541 3823..4275 +
1691683651.5314786-CDS-L-elsbetiae_contig541:3822..42751691683651.5314786-CDS-L-elsbetiae_contig541:3822..4275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig541 3823..4275 +
1622816565.865381-CDS-L-elsbetiae_contig541:4798..51661622816565.865381-CDS-L-elsbetiae_contig541:4798..5166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig541 4799..5166 +
1691683651.5407343-CDS-L-elsbetiae_contig541:4798..51661691683651.5407343-CDS-L-elsbetiae_contig541:4798..5166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig541 4799..5166 +
1622816565.879918-CDS-L-elsbetiae_contig541:5929..61791622816565.879918-CDS-L-elsbetiae_contig541:5929..6179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig541 5930..6179 +
1691683651.5515752-CDS-L-elsbetiae_contig541:5929..61791691683651.5515752-CDS-L-elsbetiae_contig541:5929..6179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig541 5930..6179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig541.13638.1

>prot_L-elsbetiae_contig541.13638.1 ID=prot_L-elsbetiae_contig541.13638.1|Name=mRNA_L-elsbetiae_contig541.13638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=357bp
MNRLAVAIAARSPSTLHRRVQQQGWPARLSKSRPRQATTTAIVHRLASTS
SSSSRGRGSRGSSSSGGWFSTPLAPGASILLAAALLCTTSAQSPAETGWW
PFSKRPKSPFEDTVPRKAKRQRAKAEREMQEYLAKMRVPVQELIAGLRKG
EVGREEFDKRMASFNNEVELATHRIIYGVSDPPDARRLFEAEHGSCRHTP
DAIQAVSALSPLIEIGAGRGHWQRALSEAGAAVVSFDKWATNPGGGVGTT
AGIPQVGRVLPGDEHAIRLHRDKTLLLVYPPPGETAVRCLREYRGGALAY
VGEGRGGVNASDAFFDGLDAEWEVTGVVELDPFPQCFERLYLLRRRREAV
DAQSPQ*
back to top

mRNA from alignment at L-elsbetiae_contig541:3652..6661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig541.13638.1 ID=mRNA_L-elsbetiae_contig541.13638.1|Name=mRNA_L-elsbetiae_contig541.13638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3010bp|location=Sequence derived from alignment at L-elsbetiae_contig541:3652..6661+ (Laminarionema elsbetiae ELsaHSoW15)
CGGACAGCCTGCTGGCGTCGTGAGCAGAACGAAGAGACGAAATAATAGAG AGGATATTAGCAGGAGAGCGGAGGCGGGCACGGAGAGCGAACTTCCTTGA GGACTCTGACCAGAAGTTGGGTCAAGCTCCGAGTAGCGCCGGGCGACGCT GAGAGCAGCTCTGCAGCAGCGATGAACAGATTGGCGGTGGCCATAGCAGC ACGATCCCCATCTACCTTACATCGAAGGGTCCAGCAGCAGGGATGGCCAG CCAGATTATCCAAGTCGCGCCCGCGACAGGCGACAACAACAGCGATAGTA CATCGTCTCGCCAGCACTAGCAGCAGCAGCAGCAGAGGCAGAGGCAGCAG AGGCAGCAGCTCCTCTGGCGGCTGGTTCTCCACACCGCTTGCACCAGGAG CGTCCATTCTACTAGCAGCTGCCTTGCTGTGCACTACCTCGGCCCAATCT CCGGCAGAAACGGGCTGGTGGCCTTTTAGCAAGCGGCCCAAGTCCCCGTT TGAGGACACGGTGCCGAGAAAGGCCAAGCGACAGAGGGCCAAAGCTGAGC GGGAGATGCAAGAGTATCTCGCCAAAATGCGTGTCCCGGTCCAGGAGCTT ATCGCTGGTCTCAGGAAAGGGGAGGTGAGTTTAGTAGCCAATCGATGTTC TATGTAGGTGTGCGAGTGAGAGGACATTTGGTTGGGCTGGCATCCGTTTG GTGACCGTCCAATTTCACGTCATTGCACAGCTCAGCGTTCACCGCCGCAG CTGAGTACGTACATGCCGGTTTTCACACCATTTCAACGTTAGTGTTCGGG GGCTGCCAGGTTCCGACTCTTTTGACGCTGGGGCAGGCTCTTTCGAGATG CGGTGTTGTGCAATGTACTGTTGTAGGTCGCTCGCGACAAGGCACATTGC AACGTGCTACTGCTGTGTACCGTACGTACGCACAGAGGGGGTGCGACCAA GTAACTCTGAACTCTGTACTCTTCTCTGCGGTTATACTGGCTACATATAT TTGCACAGTTTCACCTTCGGAACTTTGTAGCTTTGTGCATCCACAAACCC CAGTTCTCCGAGCCGTGACAATAGCAAGCACGCTTCAGTCCCAACATCTG CACATACATTGCACCACACACACACGTGTGTGTATATACATGCTCAGGTG GGCCGAGAGGAGTTCGACAAGCGAATGGCGTCCTTCAACAACGAGGTCGA GCTGGCGACCCACCGGATCATCTACGGCGTTTCTGACCCCCCCGATGCTC GCCGCCTCTTCGAGGCCGAGCACGGCAGTTGTAGACACACGCCGGACGCC ATCCAGGCGGTCTCCGCCCTGTCCCCGTTGATCGAGATCGGCGCGGGCAG GGGGCACTGGCAGCGTGCTCTCTCCGAGGCGGGAGCGGCGGTGGTGTCTT TCGATAAGTGGGCGACAAATCCCGGTGGCGGCGTCGGCACGACCGCAGGA ATACCGCAAGTCGGCAGAGTGCTCCCTGGTGATGAACACGCCATTCGGCT CCACCGCGATAAGACGTGAGTATTGTACTACTCCACGCCGCCTCAGCCTC GTATGTAAACGTATCACAGGGCTGCTGTGTGTTGTGTTGATTGTGTGTTT GTTTGCGGCATCTCCTGGTGTGTGCGGTGTCCAAGTGTTCCACAAAAAAC TCACAGAACGATCATGCTATCCGCTGTGCCAGCCTCTTCTCAAAGGAGGC GATCCCGTTTGATACTTCGAGTAATGTACTTCGAAGTATGTATTTTAATT TGCCCTGGCGGGGGGTTAGCCTCGAATACTCTAGACCGTACCACGTGATA CGGCTACACGTGTGCTCATGGATGTTACACACCCAGATCCCTCCGGCTCC GGATTTTCCACTCTTCTTGTGGCACTTAGGCAGCGATTGACGATTGCCAG AAGAAATATTGTGGGATGCTGTGTTTGCCCTGGGAAAGACTGACAAGCGT TCGGCGAAGTGAGATCACCCCGAGGCTAACCGAGGGGGTGGGATTGCAGA AAGATGTCTGACTGTGATAGCTGCCTGCGAGCAAAAAAAAACTGTTTTGC TGTCTTTTCGCTCCCTTCCTGGTTTTCTCTTTGGGGGTTGTGTTGTGTGC GTCGTCGTCGTCCCCCCCCACCCCTCCCACCCGATCCCGCCAAACCACCG AAAATCACGTGTTAGAAGCGTTGTGCCAATTGGCTCCGTGTCGCACATCA GTACCGTGTGTCTTGTACTTGAACGGGCCCCCACTCACCTTTCCGCCCAT CGACCAATCGCTGCACGCATGTACGCAGCCTTCTCCTGGTGTACCCGCCG CCCGGGGAAACGGCCGTGCGGTGCTTGCGGGAGTACAGAGGGGGCGCTCT AGCGTATGTCGGCGAGGGGAGGGGCGGGGTCAACGCCAGCGATGCATTTT TTGACGGCCTGGACGCTGAGTGGGAGGTGACCGGCGTTGTCGAGCTCGAT CCCTTCCCGCAGTGCTTCGAACGGCTGTACTTGCTGCGACGGCGGAGAGA GGCGGTGGATGCTCAGTCTCCGCAATAAGAGGCTGCGCATTGTTTTAGTG GTCTCGCCAGAGAAAACGTGGTAGATAAGAGTGATGCTTATCGGGAGGGG TGAAATGGCCATTTGTGGCTTGTTTTTTGCGGGATTTCGAAGGTCAGCCG TTTCTGTATATGGCAGCAAAGCTAAACGCCACCCGCTGGTTGTTTCATCC GCCAGTTCAACTCTTGAGGCCGGCCTTCCCATCCAAGATTAAGCTTCGTG ATTCTGCACCAGCAGTGCCGTGGGTTACAACATGTAGGCACGAGAGCCCC ATGCACCTTGACTTGCTTCGGCTCGCAGCCATAGAGGAGGTCGAAAGCGT GGAAATATCTAACGGTGCCAGATACTGCCGCAGGGCGTCGGTGTTGTCGA GGTCGAATGCATCGCCCAATGGCAGAGCGAAGTATATCAAAGGTGCAGGC GGCAAAAGGTAAGCAGCAACAAGGGATACAAGGCAAATAAAAAAGACCTA GGCAAACTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig541:3652..6661+

>mRNA_L-elsbetiae_contig541.13638.1 ID=mRNA_L-elsbetiae_contig541.13638.1|Name=mRNA_L-elsbetiae_contig541.13638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2142bp|location=Sequence derived from alignment at L-elsbetiae_contig541:3652..6661+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACAGATTGGCGGTGGCCATAGCAGCACGATCCCCATCTACCTTACA
TCGAAGGGTCCAGCAGCAGGGATGGCCAGCCAGATTATCCAAGTCGCGCC
CGCGACAGGCGACAACAACAGCGATAGTACATCGTCTCGCCAGCACTAGC
AGCAGCAGCAGCAGAGGCAGAGGCAGCAGAGGCAGCAGCTCCTCTGGCGG
CTGGTTCTCCACACCGCTTGCACCAGGAGCGTCCATTCTACTAGCAGCTG
CCTTGCTGTGCACTACCTCGGCCCAATCTCCGGCAGAAACGGGCTGGTGG
CCTTTTAGCAAGCGGCCCAAGTCCCCGTTTGAGGACACGGTGCCGAGAAA
GGCCAAGCGACAGAGGGCCAAAGCTGAGCGGGAGATGCAAGAGTATCTCG
CCAAAATGCGTGTCCCGGTCCAGGAGCTTATCGCTGGTCTCAGGAAAGGG
GAGATGAACAGATTGGCGGTGGCCATAGCAGCACGATCCCCATCTACCTT
ACATCGAAGGGTCCAGCAGCAGGGATGGCCAGCCAGATTATCCAAGTCGC
GCCCGCGACAGGCGACAACAACAGCGATAGTACATCGTCTCGCCAGCACT
AGCAGCAGCAGCAGCAGAGGCAGAGGCAGCAGAGGCAGCAGCTCCTCTGG
CGGCTGGTTCTCCACACCGCTTGCACCAGGAGCGTCCATTCTACTAGCAG
CTGCCTTGCTGTGCACTACCTCGGCCCAATCTCCGGCAGAAACGGGCTGG
TGGCCTTTTAGCAAGCGGCCCAAGTCCCCGTTTGAGGACACGGTGCCGAG
AAAGGCCAAGCGACAGAGGGCCAAAGCTGAGCGGGAGATGCAAGAGTATC
TCGCCAAAATGCGTGTCCCGGTCCAGGAGCTTATCGCTGGTCTCAGGAAA
GGGGAGGTGGGCCGAGAGGAGTTCGACAAGCGAATGGCGTCCTTCAACAA
CGAGGTCGAGCTGGCGACCCACCGGATCATCTACGGCGTTTCTGACCCCC
CCGATGCTCGCCGCCTCTTCGAGGCCGAGCACGGCAGTTGTAGACACACG
CCGGACGCCATCCAGGCGGTCTCCGCCCTGTCCCCGTTGATCGAGATCGG
CGCGGGCAGGGGGCACTGGCAGCGTGCTCTCTCCGAGGCGGGAGCGGCGG
TGGTGTCTTTCGATAAGTGGGCGACAAATCCCGGTGGCGGCGTCGGCACG
ACCGCAGGAATACCGCAAGTCGGCAGAGTGCTCCCTGGTGATGAACACGC
CATTCGGCTCCACCGCGATAAGACGTGGGCCGAGAGGAGTTCGACAAGCG
AATGGCGTCCTTCAACAACGAGGTCGAGCTGGCGACCCACCGGATCATCT
ACGGCGTTTCTGACCCCCCCGATGCTCGCCGCCTCTTCGAGGCCGAGCAC
GGCAGTTGTAGACACACGCCGGACGCCATCCAGGCGGTCTCCGCCCTGTC
CCCGTTGATCGAGATCGGCGCGGGCAGGGGGCACTGGCAGCGTGCTCTCT
CCGAGGCGGGAGCGGCGGTGGTGTCTTTCGATAAGTGGGCGACAAATCCC
GGTGGCGGCGTCGGCACGACCGCAGGAATACCGCAAGTCGGCAGAGTGCT
CCCTGGTGATGAACACGCCATTCGGCTCCACCGCGATAAGACCCTTCTCC
TGGTGTACCCGCCGCCCGGGGAAACGGCCGTGCGGTGCTTGCGGGAGTAC
AGAGGGGGCGCTCTAGCGTATGTCGGCGAGGGGAGGGGCGGGGTCAACGC
CAGCGATGCATTTTTTGACGGCCTGGACGCTGAGTGGGAGGTGACCGGCG
TTGTCGAGCTCGATCCCTTCCCGCAGTGCTTCGAACGGCTGTACTTGCTG
CGACGGCGGAGAGAGGCGGTGGATGCTCAGTCTCCGCAATAACCTTCTCC
TGGTGTACCCGCCGCCCGGGGAAACGGCCGTGCGGTGCTTGCGGGAGTAC
AGAGGGGGCGCTCTAGCGTATGTCGGCGAGGGGAGGGGCGGGGTCAACGC
CAGCGATGCATTTTTTGACGGCCTGGACGCTGAGTGGGAGGTGACCGGCG
TTGTCGAGCTCGATCCCTTCCCGCAGTGCTTCGAACGGCTGTACTTGCTG
CGACGGCGGAGAGAGGCGGTGGATGCTCAGTCTCCGCAATAA
back to top