mRNA_L-elsbetiae_contig5408.13636.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5408.13636.1
Unique NamemRNA_L-elsbetiae_contig5408.13636.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5408.13636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5408contigL-elsbetiae_contig5408:10742..11250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.6871874-UTR-L-elsbetiae_contig5408:10741..108301622816565.6871874-UTR-L-elsbetiae_contig5408:10741..10830Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5408 10742..10830 +
1691683651.4427092-UTR-L-elsbetiae_contig5408:10741..108301691683651.4427092-UTR-L-elsbetiae_contig5408:10741..10830Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5408 10742..10830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.6978168-CDS-L-elsbetiae_contig5408:10830..112501622816565.6978168-CDS-L-elsbetiae_contig5408:10830..11250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5408 10831..11250 +
1691683651.4544601-CDS-L-elsbetiae_contig5408:10830..112501691683651.4544601-CDS-L-elsbetiae_contig5408:10830..11250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5408 10831..11250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5408.13636.1prot_L-elsbetiae_contig5408.13636.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5408 10831..11250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5408.13636.1

>prot_L-elsbetiae_contig5408.13636.1 ID=prot_L-elsbetiae_contig5408.13636.1|Name=mRNA_L-elsbetiae_contig5408.13636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MQQARERDIYSASYRTNPGRNTNSKRSFSFSTGARVSSGLQYNSWDRDAD
CRVRVFDHQAEALVGCWALLAAMEAKRTRAEPFRCHNMPAKNGVRSFVAS
RVVRISTAQQQEAVASCSSSPTTIARSGRCPLSACRTSTK
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mRNA from alignment at L-elsbetiae_contig5408:10742..11250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5408.13636.1 ID=mRNA_L-elsbetiae_contig5408.13636.1|Name=mRNA_L-elsbetiae_contig5408.13636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=509bp|location=Sequence derived from alignment at L-elsbetiae_contig5408:10742..11250+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCGATCGGTCGGTTCATACATACGTAACGCGGCGCAGGTACTTTCGTC
GGATGCCCAACACAGGCAGCTTACATTTGCATCCAAGGCATGCAGCAGGC
GCGAGAGAGGGATATCTATTCGGCGTCATACAGGACCAACCCAGGGCGAA
ATACCAACTCAAAGAGGAGTTTTTCATTTTCCACGGGTGCTCGTGTTTCA
TCGGGGCTACAATACAATAGCTGGGACCGAGATGCGGACTGTCGGGTAAG
GGTGTTCGACCACCAGGCAGAGGCGTTGGTTGGTTGCTGGGCCCTACTGG
CGGCCATGGAAGCGAAGCGGACACGAGCCGAGCCCTTCCGATGCCACAAC
ATGCCGGCTAAGAACGGTGTTCGCAGCTTTGTAGCTAGCCGAGTCGTCCG
TATCTCGACAGCGCAACAACAGGAGGCCGTGGCATCATGCTCATCATCAC
CAACAACAATAGCCCGGTCCGGCCGATGCCCCCTTTCCGCATGCAGAACC
TCAACGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5408:10742..11250+

>mRNA_L-elsbetiae_contig5408.13636.1 ID=mRNA_L-elsbetiae_contig5408.13636.1|Name=mRNA_L-elsbetiae_contig5408.13636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig5408:10742..11250+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCAGGCGCGAGAGAGGGATATCTATTCGGCGTCATACAGGACCAA
CCCAGGGCGAAATACCAACTCAAAGAGGAGTTTTTCATTTTCCACGGGTG
CTCGTGTTTCATCGGGGCTACAATACAATAGCTGGGACCGAGATGCGGAC
TGTCGGGTAAGGGTGTTCGACCACCAGGCAGAGGCGTTGGTTGGTTGCTG
GGCCCTACTGGCGGCCATGGAAGCGAAGCGGACACGAGCCGAGCCCTTCC
GATGCCACAACATGCCGGCTAAGAACGGTGTTCGCAGCTTTGTAGCTAGC
CGAGTCGTCCGTATCTCGACAGCGCAACAACAGGAGGCCGTGGCATCATG
CTCATCATCACCAACAACAATAGCCCGGTCCGGCCGATGCCCCCTTTCCG
CATGCAGAACCTCAACGAAAATGCAGCAGGCGCGAGAGAGGGATATCTAT
TCGGCGTCATACAGGACCAACCCAGGGCGAAATACCAACTCAAAGAGGAG
TTTTTCATTTTCCACGGGTGCTCGTGTTTCATCGGGGCTACAATACAATA
GCTGGGACCGAGATGCGGACTGTCGGGTAAGGGTGTTCGACCACCAGGCA
GAGGCGTTGGTTGGTTGCTGGGCCCTACTGGCGGCCATGGAAGCGAAGCG
GACACGAGCCGAGCCCTTCCGATGCCACAACATGCCGGCTAAGAACGGTG
TTCGCAGCTTTGTAGCTAGCCGAGTCGTCCGTATCTCGACAGCGCAACAA
CAGGAGGCCGTGGCATCATGCTCATCATCACCAACAACAATAGCCCGGTC
CGGCCGATGCCCCCTTTCCGCATGCAGAACCTCAACGAAA
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