mRNA_L-elsbetiae_contig5407.13635.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5407.13635.1
Unique NamemRNA_L-elsbetiae_contig5407.13635.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Match: D7FM81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM81_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 5.600e-92
Identity = 149/178 (83.71%), Postives = 163/178 (91.57%), Query Frame = 1 
Query:    1 SLDSKEQQRVAKALRKALGEDVEISSPPPLLRSELKGIKLREGDGRE--RLILLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALANETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECLRSALDGSKEPLTVPESVLEHA----GGKKMSFCNIL 516
            SLDSKEQQRVAKALR+ALGEDVE+SSPPPLLRSELKGIKLRE DGR+  RLILLCH+NEGRVLLTDEDGMYNDFIMEACRV+GGNVFVALAPVSTSA +LANETLVTALAYSGGQ+GLLSIH+QKRFLTWNK PSEAQV+C R  LDG++EP +VPESVLEH+    GG+  SFCNIL
Sbjct:    6 SLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLRE-DGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAYSGGQQGLLSIHIQKRFLTWNKAPSEAQVKCFRPPLDGTREPFSVPESVLEHSEGRQGGRASSFCNIL 182
[Close]
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Match: A0A836C8Z1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z1_9STRA)

HSP 1 Score: 148 bits (374), Expect = 5.220e-39
Identity = 81/170 (47.65%), Postives = 114/170 (67.06%), Query Frame = 1 
Query:    7 DSKEQQRVAKALRKALGEDVEISSPPPLLRSELKGIKLREGDGRERLILLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALANETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECLRSALDGSKEPLTVPESVLEHAGGKKMSFCNIL 516
            D +E+++  +AL     E   +   P L  SELKGIKLR    +  L LL HF+EGRVLLTD+DG+YNDF++EA +++GGN+ +A++ V T+   LA+E +V ALAYSGGQR +LSIH QKRFLTW K P+   ++ + +AL G+   L VP+SV  ++   +  FC IL
Sbjct:   18 DPRERKKTRRALAARFREQAVVGEQP-LTVSELKGIKLR--GPKTDLALLVHFSEGRVLLTDKDGLYNDFLLEAVKLAGGNLLIAVSGVETAPGTLAHEGVVQALAYSGGQRAVLSIHQQKRFLTWAKEPAPVHLDHIAAALAGNVRLLAVPDSVNMYSSALRRRFCQIL 184
[Close]
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Match: A0A7S2XXL6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXL6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.600e-28
Identity = 70/175 (40.00%), Postives = 110/175 (62.86%), Query Frame = 1 
Query:    1 SLDSKEQQRVAKALRK-ALGEDVEISSPPPLLRSELKGIKLREGDGRERLILLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALANETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECLRSALDGSKEPLTVPESVLEHAGGKKMS--FCNIL 516
            SLD +E+  +++ +   A GE   + +  PL R+ LK + L  G     +I+LCH+NEGR+LLTD+DG+YN+FI EA + +GGNVF+ +  +S+S   LA++ +V++L  S GQ  +  I   +R LTW+  PS  Q+E L+ A+ G  +PL  PE++L H   KK+   +C +L
Sbjct:   10 SLDRRERYVLSETMNGIACGEKKLVLNSNPLSRTMLKDMVLCSGPD---MIILCHYNEGRLLLTDQDGLYNNFIKEAVKATGGNVFLVVTGLSSSGGVLADKRVVSSLV-SNGQSSIQYIDSARRLLTWDGAPSRDQLEHLQLAVRGKVDPLETPETILRHCFAKKVKAFYCVLL 180
[Close]
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Match: A0A7R9UAW8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAW8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.340e-28
Identity = 62/127 (48.82%), Postives = 81/127 (63.78%), Query Frame = 1 
Query:  145 LILLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALANETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECLRSALDGSKEPLTVPESVLEH---AGGKKMSFCNIL 516
            L++LCH+NEGRVL+TD DGMYNDF++ A + +GGNV + ++ V TS   LAN + V +L + G Q  +  IH Q+R LTWN  PS    E +  A+ G  EPL +P SVLEH   A  KK   C IL
Sbjct:   56 LVILCHYNEGRVLITDRDGMYNDFLVVASKNAGGNVLLVVSGVDTSDGELANTSFVDSLVWEGAQNAVGEIHTQRRLLTWNGSPSSFHKEHILKAVQGQLEPLQLPHSVLEHSSLAQPKKGFLCAIL 182
[Close]
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Match: A0A7S1XMY7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMY7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.540e-26
Identity = 66/157 (42.04%), Postives = 92/157 (58.60%), Query Frame = 1 
Query:   61 DVEISSPPPLLRSELKGIKLREGDGRERLILLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALANETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECLRSALDGSKEPLTVPESVLEHA----GGKKMSF-CNIL 516
            DV++     LL+   +G+++        L++LCH+NEGRVLLTD DGMYNDF++ A R  GGN+ + ++ V T   +LAN   V +L + G Q  +  ++ Q R LTW   PS A  E +  AL G   PL +PESV+E+A    G K   F CNIL
Sbjct:  142 DVQVLPEKLLLKDLKEGVEV---GADASLVILCHYNEGRVLLTDRDGMYNDFLVVAHRNCGGNILLVISGVETEGDSLANTAFVDSLVWEGAQNAMGELNTQGRLLTWKGTPSSAHKEQILKALQGQLSPLELPESVIEYANVTNGDKGGGFICNIL 295
[Close]
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Match: A0A7S2SN66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN66_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.330e-23
Identity = 64/169 (37.87%), Postives = 94/169 (55.62%), Query Frame = 1 
Query:    1 SLDSKEQQRVAKALRKALGEDVEISSPPPLLRSELKGIKLREGDGRERLILLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALANETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECLRSAL--DGSKEPLTVPESVLEHAGGKKMS 501
            +LD +E + VA+AL ++ G    +    PL   E++  +          I+LCHF EGR LLTD DG+YN F+ +A  +  GNVF+AL  +ST    LAN  +V  L + GGQ  + SIH  +RFLT+   P+E Q++ + S+L  +    PL+VP  +  HA     S
Sbjct:   16 TLDPEEHRGVAEALERSTGCGAVVR---PLRLKEVRHFRFPRDTDTPDAIILCHFAEGRTLLTDTDGLYNAFLSQAVPMVHGNVFLALTNISTPPEVLANSEVVAELVHQGGQGSIGSIHSARRFLTFQDEPAELQLQHIASSLAHEAPVAPLSVPSGIETHAASTASS 181
[Close]
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Match: A0A7S3JRP1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRP1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.940e-20
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:  145 LILLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALANETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECLRSALDGSKE--PLTVPESVLEHAGGKKMS 501
            +ILLCH+ +GR LLTD DG+YN F++EA   +GG VFVAL  V      LA   L+  L + G Q  +  +H QKRF TW+  PS+AQV  + SA    KE  PL +P S+ EHA   + +
Sbjct:   52 VILLCHYFDGRTLLTDNDGLYNTFLVEAVAATGGYVFVALTGVPADDR-LARLDLINQLTHDG-QTSISELHRQKRFFTWDSFPSKAQVNIIVSAAKDEKEQCPLQLPISIKEHAAAYRQN 170
[Close]
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Match: A0A0G4EHK5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHK5_VITBC)

HSP 1 Score: 67.8 bits (164), Expect = 8.900e-10
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = 1 
Query:   91 LRSELKGIKLREGDGRERLILLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALANETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECL 420
            ++++L+G  L E      ++++ H NEGR+LLTD +G+YND +      +  NV + +  V TS   L +  LV  LA+   Q  + ++    R +T+++ PS+ Q + L
Sbjct:    1 MKAQLRGFLLAERKTAVDMVVIVHRNEGRLLLTDRNGLYNDVLQACWHATNANVVIIVTKVPTSPDTLNDSALVATLAHHADQPTIGALSAAGRLITYDQTPSQRQADYL 110
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5407.13635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FM81_ECTSI5.600e-9283.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8Z1_9STRA5.220e-3947.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XXL6_9STRA1.600e-2840.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UAW8_9STRA2.340e-2848.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XMY7_9STRA3.540e-2642.04Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SN66_9STRA2.330e-2337.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JRP1_9STRA4.940e-2045.45Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A0G4EHK5_VITBC8.900e-1030.91Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5407contigL-elsbetiae_contig5407:3673..8467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004730.1
Exons5
Model size1351
Cds size519
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5407.13635.1prot_L-elsbetiae_contig5407.13635.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5407 4505..8467 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.5905704-UTR-L-elsbetiae_contig5407:3672..45041622816565.5905704-UTR-L-elsbetiae_contig5407:3672..4504Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5407 3673..4504 -
1691683651.3803012-UTR-L-elsbetiae_contig5407:3672..45041691683651.3803012-UTR-L-elsbetiae_contig5407:3672..4504Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5407 3673..4504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.6042974-CDS-L-elsbetiae_contig5407:4504..45671622816565.6042974-CDS-L-elsbetiae_contig5407:4504..4567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 4505..4567 -
1691683651.3928733-CDS-L-elsbetiae_contig5407:4504..45671691683651.3928733-CDS-L-elsbetiae_contig5407:4504..4567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 4505..4567 -
1622816565.6154912-CDS-L-elsbetiae_contig5407:5002..51291622816565.6154912-CDS-L-elsbetiae_contig5407:5002..5129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 5003..5129 -
1691683651.4030323-CDS-L-elsbetiae_contig5407:5002..51291691683651.4030323-CDS-L-elsbetiae_contig5407:5002..5129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 5003..5129 -
1622816565.625921-CDS-L-elsbetiae_contig5407:5529..56171622816565.625921-CDS-L-elsbetiae_contig5407:5529..5617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 5530..5617 -
1691683651.4131935-CDS-L-elsbetiae_contig5407:5529..56171691683651.4131935-CDS-L-elsbetiae_contig5407:5529..5617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 5530..5617 -
1622816565.6367185-CDS-L-elsbetiae_contig5407:6512..66451622816565.6367185-CDS-L-elsbetiae_contig5407:6512..6645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 6513..6645 -
1691683651.422896-CDS-L-elsbetiae_contig5407:6512..66451691683651.422896-CDS-L-elsbetiae_contig5407:6512..6645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 6513..6645 -
1622816565.6477087-CDS-L-elsbetiae_contig5407:8359..84671622816565.6477087-CDS-L-elsbetiae_contig5407:8359..8467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 8360..8467 -
1691683651.432441-CDS-L-elsbetiae_contig5407:8359..84671691683651.432441-CDS-L-elsbetiae_contig5407:8359..8467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5407 8360..8467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5407.13635.1

>prot_L-elsbetiae_contig5407.13635.1 ID=prot_L-elsbetiae_contig5407.13635.1|Name=mRNA_L-elsbetiae_contig5407.13635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
SLDSKEQQRVAKALRKALGEDVEISSPPPLLRSELKGIKLREGDGRERLI
LLCHFNEGRVLLTDEDGMYNDFIMEACRVSGGNVFVALAPVSTSAAALAN
ETLVTALAYSGGQRGLLSIHMQKRFLTWNKVPSEAQVECLRSALDGSKEP
LTVPESVLEHAGGKKMSFCNIL*
back to top

mRNA from alignment at L-elsbetiae_contig5407:3673..8467-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5407.13635.1 ID=mRNA_L-elsbetiae_contig5407.13635.1|Name=mRNA_L-elsbetiae_contig5407.13635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4795bp|location=Sequence derived from alignment at L-elsbetiae_contig5407:3673..8467- (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGACAGCAAGGAGCAGCAGAGGGTGGCGAAGGCGCTTCGAAAAGC
TCTCGGCGAGGATGTAGAGATTTCGTCCCCCCCGCCCCTCCTGCGATCAG
AGCTGAAGGTAGGGGCCTCCAACCAGTTTAGGAAATTATGTATAGACAGT
AAAAATGATTTGCGATTTAAAAAAAACACTATTTAGTGCCGGAAGAACGT
GCCTGTAGCCTGGGACGGTGGCGGAGGGGGGTTATTTCGTGCCTCTACAA
CAGTAGTAGCCCCCCCTGGAACGACTTTTGCACAGGTCTGACGTACTGTA
ATCATGCGAAGGTTCGCACCCCCGTGTCAGCGTTTTTCTATAGCGTATTT
CTGCACAACCAGGAGGGTACCACTGCAGAAAAGGGTGGTTTTCGAAACGT
CTCGTCGGGGGCTTTCCAGAGAGGTATCAGTTAGTGTTCGCACCCTCCCG
GTTGTGGAGAAATACGCTATAGAAAATGCTAACACGGGGGTGCGATAACC
CGCATGATAACGGCAGGCCGCTGACATCAAGGAGAACATGTAAGAAAGAA
AAAACACCGCCAATAACACAGACCCTTGCACGACCGGTTGGGAGCGTTGC
GCAAGAAGAAGCGTGTTGGTTCTCGCTCATCGAGTTGTAGGCGAGGCTAC
TCTATACACACAATATCACGTAGTCTACCTCCAACCGCACACTCTGAAGT
CAAGATACCCCGGAGTTTTTTTTCTGGGCAAAAAATCAAGACTACTATGC
AGGCATAAACTGCGCACTGCTGTGGATATGTATGTAGCTTCCAAGTAGGT
GCAGTCTGCAAACCTCAAGGGCGATATCAGTAGAGGGCCCCACGGAGAGA
TGTGACATCCGTATGTGAAGGCATGCCAAGATCTACTGCTGTCGGGGACG
ACATATCGATGGCCGCGGCAGTAGCTCGAGAACTCCGCAACCCAGGCCCG
CATCTAACACCTTCCACTGCGGCGCTCGCCGCCGCAGAACTCAAGACCCC
TCCTCGACTGCGGGTCTACAGCAGTAGTTCATGCCACACACGGTATACGC
AGTAGCTGCCTTTGGCGACCCGCAGTTTAGAAGATCGGTGCCCATATTGT
GGCAGGCGAGCATATCCGCATCAAACCTTCGGTTTCGGCCCGGATTGCGG
AGTTCTGGAGCCATGTACTGCTGCGACCCTCAATAGCTCCTCACCAGCAG
CAGATCTGAGCATGCGAGCACTCAGCTCACCTCTCCATGGCATCCTCTAC
TGGTATTGCCATTCAAGCTGCAGAATTTACGGCGAGAAGGTGGTTTCCGT
GCATCCTCTTGGGATTCTGACAAGATAGGTTCCCCGTGGCCCTTCCCCGT
GAACTTGTGAACTCGCACGCAGAGCATCATCAGTGAGACTGGGATTGAAC
CCCAACAAAAGACAATTTCCGGATCTTTGACTGCCGTAACATTGATTGGC
GTGTGTAATTATCTGCCACGTGTGAAGCGCCTGCCTGACCACCACTGTTG
GACAGAAAAAAACATTCCCAATTGTTTTTTCCCGCGCATGATCCTGCTGC
AACAATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGTTTCTTCGTTT
TTAGTGACTGGTGTTCGTTTTTTTCTTCTAATTCTTCCTAACCAAAAGAG
TGAGTGNNNNNNNNNNGCCCCCCCCTGGTGGGCAGAAAAAAACCTTCCCA
ATTGTTTTTTCCCCCCCATGATCCTGCTGCAAAAACCCCCCCCCCCCCCC
CCCACCTCCGGTAGCGTTTTTGCTTTTGGCCGGCTGCTGTTTCTAATCAT
TGCCATTACCTTCCACGAAAAGGGGATAAAGCTTCGTGAGGGAGATGGCA
GGGAGCGGTTAATCTTGCTTTGCCACTTCAACGAGGGTCGAGTTCTTTTG
ACCGACGAGGACGGCATGTACAACGATTTTATTATGGAGGCGTGCAGAGT
TTCCGGTAAGTGGGGGTGTCCCTCTCCCCCGCCACGGTAGAAGCGCACCC
CCCACCTCCTTATTTTCCCAAGCAACTACATGCAGTACATATTTAGCTCA
CGAATACGTGTCGAGTCAGTTTGGCCGCTGTTGCGCCCAAACATTCGGCG
AGAGTCGAAGCTGGCGAGGTACATCAGTGGTCGGGTTCGGGTTTTCTTAG
ATTGCGCAAGTGTGGAGCGCGCGCGCGCACACACACGCGCGCGCTTGACG
GGGGAATAAATGGCTGACAGCGAGATCTTGCCGCCGTGCTTCCTCCCGTC
TACACAGCCGATACGCGCCCCTCAAGCTTCCGCCCCGCAACTCTCCCCTT
CCCTCCCCTCCTCGACGAAGCAACACTGCGTGCCGCACGGCGGTGGTACA
TAGGTTGCGCGGAAGTATGTAGCCTCGTTCGAATTGGAGTACATACATAT
ACTTGTATGAGCTTGTCTCGAACGACAGGACGAGGGCGTGAGACTAAAAC
CAACTGCTGTCGTAGTATACCACACTGCCACACCCGGCTTAGACGAAGAA
AATAAGAAGTATTTAGAGGTTGGTGCCTGCTGCGCGTCACGCACGTCCAG
TAAGTCCGAAAGACTGCGAGCAACTCCCTCTCCCCCCTCCGGCCGCATTG
ATACGAGAACGAACCGCAAGACCCACCCCTCCCTGGCACGTTTTTTTTTT
TTTTTTTTTTTTTTCGTTTTTCGAATTCACCCTCTCACTCTCGCTCCGCC
GCCGGCTGAAACGTCCTCTTTGCGTTGGCGCNNNNNNNNNNAAGAAAAAA
AAAAAAGGTTCGGAGGGGCCGCCCCCTCCGGGGCCCGTTTTTTTTTTTTT
TTTTTGGCGGCGATGTGCGAATGCACGCACGCACGCGCGCGCGGCGGCAG
GCGGAAACGTCTTCGTGGCGTTGGCGCCGGTGTCCACCTCCGCAGCAGCC
TTGGCGAACGAGACTCTCGTGACGGCCCTGGCGTACAGGTCAGGAACAAC
CCAAGCCCTGCTGGTTGCTACTTTTACTAAATATGTATATGTTGTACTCT
TTGTGCACCTTCCCGTCGCCGGCGCTGGCGGATGTGGGCCGTTCAACCTC
ACGGTCCGAGAGCCCGTCACCAGCTGACTGGGTTTCTGACGCCAATCGGC
CACTGATGATGCGCAACCAGACGCCCCGGTGCTACAGCAGTCGGTTATCT
AGCTCCCCGTTTAGGCGCCCCGCGCCTTATTCATTCAGTCTCCCTGCTCG
CTCGCTGCTGCGCCCTCCACTGCATAGGTGGGTATGCGCCCTTGTTCCTC
TCATGTTTTCCCGTTTGTGTGGTTTCGGTGCCCTCTTTGTTCTTCTTCGC
CTCCGAATGTGACGTGCGTGTGTACCGCGATGCGTCAGCGGCGGTCAACG
AGGATTGCTCTCCATTCACATGCAGAAGCGGTTCCTGACGTGGAACAAGG
TGCCCAGCGAGGCGCAGGTGGAGTGCTTGCGGAGTGCCCTGGATGGGAGC
AAGGAACCGCTCACGGTGAGTTTTTATTTTATTTAATTTTATTTTATGAT
TTCATCGTTATTTATTTATTCCGCTGATAGGCTTTGTGTGGTGAAGAGTG
TTGCTGGTTTCAACAGCCGTAGTAGTAGTTATCGGATTTCGACGAGCGGT
CGATAGATGAATCAGCTGTAGGAGTCCAGTAGGAGCGAGTAGGAGCGAGA
AGGAACGCGTATCTCAGTTTCGTGATGGGGTGTTCGTGTGCTATCTGAGT
GTCGACATGCATAGGTACACGTGACGAGCCTTCACCCACCGGGTCATTCA
CCACCCACCATCCACGCTCTTTGTTCAGATACGTCGTTCCCAACGCGGTC
GTCGCGGCTTTCGGCAGTCCCGAAAGACAAAGAAAATATAACCAAACCTT
GATGCCCTGTCCCACTTCATGTCGCCCGCTGCATGTGTCTGTTGACGCAG
GTGCCGGAGTCCGTCCTTGAGCACGCGGGGGGGAAAAAAATGTCGTTCTG
CAATATTTTGTAGCTAAATAGCTCATCGCGCGATGCGGCTTTTTGCTCGG
CGTTCGGCGGGGAGACCGGGAAACTGCACCCGGCAGCGGCGTATGTAGGG
GCCATTCGCTGTGCAGAACCCACACTTGTAATTATTGAGGCAGGCAGCAA
CGACTGCTGTCTCCCACTCGAAAAAGACCACGGGCTCAAAGTAACCTTTC
GGGAGAAGGCCGAAAAGCTTGTGCGAGAATTTGTTTTTAAGGTTTTTCAT
GGTTATGTAGCAGGCGGGTGGCAAGATCTGCGCCAATAGATACTGCAGTA
GAGACGAGGGGAGGGGTCAAGAGGCCGTGCTCCCTCAGCGACGAGCGCTA
TGATGTACCTGTGCCAGAGATTCTCCGGCCTCGCTAGTCGCTGCTGGGTC
CAATATTTTTTAGGGCCGTGCTGAGAGTCGTTGTTGGGCCTGCTACGTTT
CCGGTGCTACCTGAGGCCGTAGCCGAGTGGCGCGGCGAGCGTGTGGAAAA
TGTGGTGGGTGGGGATGGAGGAGCGAGCGGCTGTGTCGACATATTCGGCG
CTGCGCGGCGGTCGTGCACAGACAAGACACGGTTTAGAAAATAGCGGAGA
GGGTTGTATAGGTGTGAGGATAGAGCAACGATGGTCTGGTCTGGTATGGT
CGCCTGGACGATGCCTTGGCCTTTTATTGCGGTCGGTGACTCTTCTGGCT
TGTTCTCTCGATTAGGCTCGTTGTTGCGGTATCACAAAAGTGTTGTGACA
CTGCTAAATAGCTGTGGTGTGTTGGAGGGCCGGCCGTCTTGGATTTTGCG
GTGAAATGTTGGACGTGAAATGTTTCAGTTTCATCGAGGCGTGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5407:3673..8467-

>mRNA_L-elsbetiae_contig5407.13635.1 ID=mRNA_L-elsbetiae_contig5407.13635.1|Name=mRNA_L-elsbetiae_contig5407.13635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig5407:3673..8467- (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGACAGCAAGGAGCAGCAGAGGGTGGCGAAGGCGCTTCGAAAAGC
TCTCGGCGAGGATGTAGAGATTTCGTCCCCCCCGCCCCTCCTGCGATCAG
AGCTGAAGAGCCTCGACAGCAAGGAGCAGCAGAGGGTGGCGAAGGCGCTT
CGAAAAGCTCTCGGCGAGGATGTAGAGATTTCGTCCCCCCCGCCCCTCCT
GCGATCAGAGCTGAAGGGGATAAAGCTTCGTGAGGGAGATGGCAGGGAGC
GGTTAATCTTGCTTTGCCACTTCAACGAGGGTCGAGTTCTTTTGACCGAC
GAGGACGGCATGTACAACGATTTTATTATGGAGGCGTGCAGAGTTTCCGG
GGATAAAGCTTCGTGAGGGAGATGGCAGGGAGCGGTTAATCTTGCTTTGC
CACTTCAACGAGGGTCGAGTTCTTTTGACCGACGAGGACGGCATGTACAA
CGATTTTATTATGGAGGCGTGCAGAGTTTCCGGCGGAAACGTCTTCGTGG
CGTTGGCGCCGGTGTCCACCTCCGCAGCAGCCTTGGCGAACGAGACTCTC
GTGACGGCCCTGGCGTACAGGCGGAAACGTCTTCGTGGCGTTGGCGCCGG
TGTCCACCTCCGCAGCAGCCTTGGCGAACGAGACTCTCGTGACGGCCCTG
GCGTACAGCGGCGGTCAACGAGGATTGCTCTCCATTCACATGCAGAAGCG
GTTCCTGACGTGGAACAAGGTGCCCAGCGAGGCGCAGGTGGAGTGCTTGC
GGAGTGCCCTGGATGGGAGCAAGGAACCGCTCACGCGGCGGTCAACGAGG
ATTGCTCTCCATTCACATGCAGAAGCGGTTCCTGACGTGGAACAAGGTGC
CCAGCGAGGCGCAGGTGGAGTGCTTGCGGAGTGCCCTGGATGGGAGCAAG
GAACCGCTCACGGTGCCGGAGTCCGTCCTTGAGCACGCGGGGGGGAAAAA
AATGTCGTTCTGCAATATTTTGTAGGTGCCGGAGTCCGTCCTTGAGCACG
CGGGGGGGAAAAAAATGTCGTTCTGCAATATTTTGTAG
back to top