mRNA_L-elsbetiae_contig540.13622.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig540.13622.1
Unique NamemRNA_L-elsbetiae_contig540.13622.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig540.13622.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 8.220e-44
Identity = 87/97 (89.69%), Postives = 88/97 (90.72%), Query Frame = 3 
Query:  198 MPPTP-FHPDDGSSKKTGRLGRLTKREAVSLASLKVLARKQGLSLGLVRGPGEQNDVCLLRFLRAQGFEEKRALASLVSCVEWGAGVGLSGLRGHPG 485
            MP TP FHP + SSK TGRLGRLTKREA SLASLK LARKQGLSLGLVRGPGEQNDVCLLRFLRAQ FEEKRALASLVSCVEWGA VGLSGLRGHPG
Sbjct:    1 MPATPLFHPKNESSKGTGRLGRLTKREAASLASLKQLARKQGLSLGLVRGPGEQNDVCLLRFLRAQRFEEKRALASLVSCVEWGASVGLSGLRGHPG 97
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BLAST of mRNA_L-elsbetiae_contig540.13622.1 vs. uniprot
Match: A0A6H5JL26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL26_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 8.550e-44
Identity = 86/97 (88.66%), Postives = 87/97 (89.69%), Query Frame = 3 
Query:  198 MPPTP-FHPDDGSSKKTGRLGRLTKREAVSLASLKVLARKQGLSLGLVRGPGEQNDVCLLRFLRAQGFEEKRALASLVSCVEWGAGVGLSGLRGHPG 485
            MP TP FHP + SSK TGRLGRLTKREA SLASLK LARKQGLSLGLVRGPGEQNDVCLLRFLRAQ FEEKRALASLVSCVEWGA VGLSGLRGH G
Sbjct:  360 MPATPLFHPHNESSKGTGRLGRLTKREAASLASLKQLARKQGLSLGLVRGPGEQNDVCLLRFLRAQRFEEKRALASLVSCVEWGASVGLSGLRGHHG 456
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BLAST of mRNA_L-elsbetiae_contig540.13622.1 vs. uniprot
Match: A0A835Z1B8_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.360e-16
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 3 
Query:  198 MPPTP-FHPDDGSSKKTGRLGRLTKREAVSLASLKVLARKQGLSLGLVRGPGEQNDVCLLRFLRAQGFEEKRALASLVSCVEWGAGVGLSGLR 473
            MPPT  FHP   +  + GRLG LTK+E  +L++ K   +K+ L+L LV GPGEQ D+C+LR+LRA  F+EK+ALA+L +  EW A V L  LR
Sbjct:    1 MPPTLLFHPM--APARPGRLGSLTKKEQAALSACKHAVKKKPLNLWLVGGPGEQEDLCVLRYLRASNFDEKKALAALSASAEWCAAVSLRQLR 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig540.13622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LI57_ECTSI8.220e-4489.69CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JL26_9PHAE8.550e-4488.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1B8_9STRA5.360e-1651.61CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig540contigL-elsbetiae_contig540:13180..14659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.9e-39
Seed eggNOG ortholog2880.D8LI57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size501
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig540.13622.1prot_L-elsbetiae_contig540.13622.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig540 13377..14659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.6190426-UTR-L-elsbetiae_contig540:13179..133761622816564.6190426-UTR-L-elsbetiae_contig540:13179..13376Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 13180..13376 +
1691683650.7480927-UTR-L-elsbetiae_contig540:13179..133761691683650.7480927-UTR-L-elsbetiae_contig540:13179..13376Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 13180..13376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.6324208-CDS-L-elsbetiae_contig540:13376..135891622816564.6324208-CDS-L-elsbetiae_contig540:13376..13589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 13377..13589 +
1691683650.7584045-CDS-L-elsbetiae_contig540:13376..135891691683650.7584045-CDS-L-elsbetiae_contig540:13376..13589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 13377..13589 +
1622816564.643038-CDS-L-elsbetiae_contig540:14569..146591622816564.643038-CDS-L-elsbetiae_contig540:14569..14659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 14570..14659 +
1691683650.7670395-CDS-L-elsbetiae_contig540:14569..146591691683650.7670395-CDS-L-elsbetiae_contig540:14569..14659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 14570..14659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig540.13622.1

>prot_L-elsbetiae_contig540.13622.1 ID=prot_L-elsbetiae_contig540.13622.1|Name=mRNA_L-elsbetiae_contig540.13622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MPPTPFHPDDGSSKKTGRLGRLTKREAVSLASLKVLARKQGLSLGLVRGP
GEQNDVCLLRFLRAQGFEEKRALASLVSCVEWGAGVGLSGLRGHPGVVTD
G
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mRNA from alignment at L-elsbetiae_contig540:13180..14659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig540.13622.1 ID=mRNA_L-elsbetiae_contig540.13622.1|Name=mRNA_L-elsbetiae_contig540.13622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1480bp|location=Sequence derived from alignment at L-elsbetiae_contig540:13180..14659+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGCTTGTTTGGGCAGCCGTCTCCGCGCGTGTGTACATCCTTCAGCTTT
GCATGTCGGACGTTTATGACTAGCTGTTCTGTGCCTTAGCAAAGGCGAAA
CACTTCGTGCATCCAGTGGTGGCGAGGAGGAACGAAACAATCAATAGATA
GAGTCTCGAGCGGGCGGAGAGATACGCCGGAGGTTAGTTTCAAAAGGATG
CCTCCCACGCCATTCCACCCGGACGATGGATCATCAAAGAAAACAGGGCG
CTTGGGTAGGTTGACTAAGCGGGAAGCTGTTTCGCTGGCTTCTCTGAAGG
TTCTTGCCAGGAAGCAAGGGCTGAGTCTTGGCCTCGTCCGCGGTCCAGGG
GAACAAAACGACGTTTGCCTGTTGCGTTTTCTTCGAGCTCAAGGCTTCGA
GGAGAAGCGGGTGAGTGCTGGGTGTGTACGCAGTGAGGCAGAGAGGAAAG
AGTTGGGGAAGGATTGGGATCCATTCTATATAATACATCCGGATGGCAGG
TACAGTGCTGCTCGTGAGGCAATATTGGTGCAGCGGGCAATGCAGCAATT
TCAGACCGTTGGTGTTCATACACATTCCGGACCGTGTGCTGCACACACGA
CATCCCAGCGGCGTTTTCGGTACGAATTGTTCTATTTTGCCGTGGGCGCT
CTCGCTCTCTCTCTATTGCATCTATTTCGGGCTCTCGGGTTGCAAACGTG
TGGGGGTCTCTGTTCACTTCGGGACGTGCCGTTGGGTGTCTACTCCTTCC
GCCTCTCTCTCGCGAAAAACAGCAGTCGCCGTCGACAAGCTTCTTGTGCG
CATGACACGCCAGAGATACTTGCCGGAAGTGATCAACAGCCACAACAGTA
CTTAGCGTGGACGATGCTGTCATTCAATGCCAAAATTTTAATTATAATGC
TGTCATTGTGGGATAATGGCGATCACCCTTATAAGGTGTTGTAAGAACCT
TTCACCGTCTATCGTAGGACGCTTGGTCCTGTCACATTATCAACCAAACG
TAACGTACCGTAGGTGACATAAGATACCACACCCCCTGGACAGGTTTTCA
AAGCTCGATTCCTCCCCAGCAAGAAGAGTGCCAGTGCCGAAAGGGGTGGC
GCTGGAAAGATCTAGTCCAGGGCTATCCGAAAATGTGCCGTTCGTTGCCG
GCACCCTCTTCGTTACGGAGTAATGGAGCTCTAAAAGTCGGTCCAGGGGG
TGTGGTATCTTGTGTCACCCACGGTACCACTCCGGAGTAATACATAAAAT
ACGGCGCCCCGGTACGATTCCATCAATACCAAGGTTATGCCTCTTCTTCT
CTTTCTCCTTATCGGCCGTCCACGGTGTTGCGTGTGTCTTCCCTCTCTTG
TATCTGCACACTCTCGTCGGCGACGTATGTATATGCGCAGGCCTTGGCGT
CGCTAGTTTCCTGCGTAGAATGGGGGGCCGGGGTGGGCCTATCGGGCCTG
CGCGGCCACCCCGGGGTCGTGACGGACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig540:13180..14659+

>mRNA_L-elsbetiae_contig540.13622.1 ID=mRNA_L-elsbetiae_contig540.13622.1|Name=mRNA_L-elsbetiae_contig540.13622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig540:13180..14659+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCCCACGCCATTCCACCCGGACGATGGATCATCAAAGAAAACAGG
GCGCTTGGGTAGGTTGACTAAGCGGGAAGCTGTTTCGCTGGCTTCTCTGA
AGGTTCTTGCCAGGAAGCAAGGGCTGAGTCTTGGCCTCGTCCGCGGTCCA
GGGGAACAAAACGACGTTTGCCTGTTGCGTTTTCTTCGAGCTCAAGGCTT
CGAGGAGAAGCGGATGCCTCCCACGCCATTCCACCCGGACGATGGATCAT
CAAAGAAAACAGGGCGCTTGGGTAGGTTGACTAAGCGGGAAGCTGTTTCG
CTGGCTTCTCTGAAGGTTCTTGCCAGGAAGCAAGGGCTGAGTCTTGGCCT
CGTCCGCGGTCCAGGGGAACAAAACGACGTTTGCCTGTTGCGTTTTCTTC
GAGCTCAAGGCTTCGAGGAGAAGCGGGCCTTGGCGTCGCTAGTTTCCTGC
GTAGAATGGGGGGCCGGGGTGGGCCTATCGGGCCTGCGCGGCCACCCCGG
GGTCGTGACGGACGGCGCCTTGGCGTCGCTAGTTTCCTGCGTAGAATGGG
GGGCCGGGGTGGGCCTATCGGGCCTGCGCGGCCACCCCGGGGTCGTGACG
GACGGC
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