mRNA_L-elsbetiae_contig540.13628.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig540.13628.1
Unique NamemRNA_L-elsbetiae_contig540.13628.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig540.13628.1 vs. uniprot
Match: D8LJ34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ34_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 5.730e-5
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:  310 RQVFYDWFSDAVCEAMDMSVFESEKTDGKAPAKTSPR 420
            RQVFYDW   ++   MDM+VF+S+KTDGKAP +TSPR
Sbjct:  893 RQVFYDW---SLGPQMDMNVFDSDKTDGKAPIRTSPR 926
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig540.13628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ34_ECTSI5.730e-564.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig540contigL-elsbetiae_contig540:32891..33313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size425
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.4667518-CDS-L-elsbetiae_contig540:32890..333131622816564.4667518-CDS-L-elsbetiae_contig540:32890..33313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 32891..33313 +
1691683650.6417587-CDS-L-elsbetiae_contig540:32890..333131691683650.6417587-CDS-L-elsbetiae_contig540:32890..33313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 32891..33313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig540.13628.1prot_L-elsbetiae_contig540.13628.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig540 32891..33313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig540.13628.1

>prot_L-elsbetiae_contig540.13628.1 ID=prot_L-elsbetiae_contig540.13628.1|Name=mRNA_L-elsbetiae_contig540.13628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
VVFGSLAHSRGRLLGCGRFGIHVCMSCSSSEGVCRDALRPGVFPPVCRVS
RRVHAKAAESSGQSRSDSAFHLGRYLCAANDRSAAGKQRTMISLNHSAMF
RCCRQVFYDWFSDAVCEAMDMSVFESEKTDGKAPAKTSPR*
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mRNA from alignment at L-elsbetiae_contig540:32891..33313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig540.13628.1 ID=mRNA_L-elsbetiae_contig540.13628.1|Name=mRNA_L-elsbetiae_contig540.13628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=423bp|location=Sequence derived from alignment at L-elsbetiae_contig540:32891..33313+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGTGTTCGGATCATTAGCTCACAGTAGGGGTCGGCTTTTAGGCTGCGG
TCGGTTTGGTATTCATGTGTGCATGAGCTGCAGCAGCTCGGAAGGGGTGT
GTCGCGACGCGCTGCGCCCCGGTGTTTTCCCGCCCGTGTGTCGCGTCTCC
CGCCGGGTTCACGCGAAAGCCGCGGAGTCCTCTGGACAGAGTAGAAGTGA
TTCGGCGTTTCATCTCGGAAGGTATTTGTGTGCGGCCAACGACCGAAGTG
CCGCAGGCAAGCAGCGAACGATGATCTCCCTGAATCACTCGGCCATGTTC
CGATGCTGTCGGCAGGTGTTCTACGACTGGTTTTCCGATGCTGTTTGCGA
AGCCATGGACATGAGCGTTTTCGAGTCCGAGAAGACGGACGGTAAAGCGC
CCGCCAAGACCTCCCCTCGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig540:32891..33313+

>mRNA_L-elsbetiae_contig540.13628.1 ID=mRNA_L-elsbetiae_contig540.13628.1|Name=mRNA_L-elsbetiae_contig540.13628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig540:32891..33313+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGTGTTCGGATCATTAGCTCACAGTAGGGGTCGGCTTTTAGGCTGCGG
TCGGTTTGGTATTCATGTGTGCATGAGCTGCAGCAGCTCGGAAGGGGTGT
GTCGCGACGCGCTGCGCCCCGGTGTTTTCCCGCCCGTGTGTCGCGTCTCC
CGCCGGGTTCACGCGAAAGCCGCGGAGTCCTCTGGACAGAGTAGAAGTGA
TTCGGCGTTTCATCTCGGAAGGTATTTGTGTGCGGCCAACGACCGAAGTG
CCGCAGGCAAGCAGCGAACGATGATCTCCCTGAATCACTCGGCCATGTTC
CGATGCTGTCGGCAGGTGTTCTACGACTGGTTTTCCGATGCTGTTTGCGA
AGCCATGGACATGAGCGTTTTCGAGTCCGAGAAGACGGACGGTAAAGCGC
CCGCCAAGACCTCCCCTCGCTAGGTTGTGTTCGGATCATTAGCTCACAGT
AGGGGTCGGCTTTTAGGCTGCGGTCGGTTTGGTATTCATGTGTGCATGAG
CTGCAGCAGCTCGGAAGGGGTGTGTCGCGACGCGCTGCGCCCCGGTGTTT
TCCCGCCCGTGTGTCGCGTCTCCCGCCGGGTTCACGCGAAAGCCGCGGAG
TCCTCTGGACAGAGTAGAAGTGATTCGGCGTTTCATCTCGGAAGGTATTT
GTGTGCGGCCAACGACCGAAGTGCCGCAGGCAAGCAGCGAACGATGATCT
CCCTGAATCACTCGGCCATGTTCCGATGCTGTCGGCAGGTGTTCTACGAC
TGGTTTTCCGATGCTGTTTGCGAAGCCATGGACATGAGCGTTTTCGAGTC
CGAGAAGACGGACGGTAAAGCGCCCGCCAAGACCTCCCCTCGCTAG
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