prot_L-elsbetiae_contig5399.13611.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5399.13611.1
Unique Nameprot_L-elsbetiae_contig5399.13611.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length292
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5399.13611.1 vs. uniprot
Match: A0A6H5KAC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC9_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.870e-34
Identity = 117/283 (41.34%), Postives = 152/283 (53.71%), Query Frame = 0 
Query:   15 TLDLGQNRIMDPGGLVLAAALPRSTSLESLTVSYNFMMEDAAQALLKGAAGSHMPLREIHCEGNLFDDDMCGLIAHMLKHRDKTRTPIVHTP--PSDGAPDGMPCRSPLAKGATDSPIKTTPSPGKGEARFDGSSPCDDVSDPRDKGVAVSAGVVVTGAGIGRNTQASPNVWQSPPRVKRVSGEGER-LPTLARCSSAGR----KLRRRRQGAGLSSSYLAAAIGCPISTPAAVN-----ETAGRVAGQDSDQHRSSKAET-DSISDLFRMGLDFGQKRFRGA 284
            ++ + QNRI DPGG +L AALPRS SLES+T+SYNFMME+AAQALL  AA S   L+E+HCEGNLFD+D+CG IA  LK RD      + +P  P    P  +   SP + G  ++          G   FD  SP D +  PR  G    AGV V G+   R    +P V +S P   RV+ +     P +A   S  R       +R +   +SSSYLAAAIGCP    AAV      E  GR+      +HR  +  + + + + FR GL+ GQ RFR A
Sbjct:  669 SIRVNQNRITDPGGTMLGAALPRSVSLESITLSYNFMMEEAAQALLSAAASSRPTLKEVHCEGNLFDEDLCGHIAQALKRRDDR----ISSPRKPRRNVPGIV---SPTSAGQMET----------GNDWFD-CSPHDSLPCPRG-GERNLAGVDVGGS---RAPTRNPKVGRSFPGGWRVTSDNSATFPPVADGRSRKRGHDQAQEQRDEREAVSSSYLAAAIGCPCIPAAAVGAVGSKEETGRLPPDTDQRHRHGEQPSYNPMDNQFREGLELGQTRFRQA 929
[Close]
BLAST of mRNA_L-elsbetiae_contig5399.13611.1 vs. uniprot
Match: D7FTD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD1_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 8.830e-25
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 
Query:    5 RLHRKIPIVRTLDLGQNRIMDPGGLVLAAALPRSTSLESLTVSYNFMMEDAAQALLKGAAGSHMPLREIHCEGNLFDDD 83
            R HR  P+++TLDLGQNRI DPGG  L AALPRS  LES+T+SYNFMME+AAQALL  AA S   L+EIHCEGNLFD++
Sbjct:  243 RSHRP-PLIKTLDLGQNRITDPGGTTLGAALPRSVFLESITLSYNFMMEEAAQALLSAAASSRPTLKEIHCEGNLFDEE 320
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5399.13611.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAC9_9PHAE2.870e-3441.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTD1_ECTSI8.830e-2569.62Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 6..106
e-value: 1.2E-12
score: 49.2
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 9..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5399contigL-elsbetiae_contig5399:9079..10833 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5399.13611.1mRNA_L-elsbetiae_contig5399.13611.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5399 7562..10914 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5399.13611.1 ID=prot_L-elsbetiae_contig5399.13611.1|Name=mRNA_L-elsbetiae_contig5399.13611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=292bp
MQRRRLHRKIPIVRTLDLGQNRIMDPGGLVLAAALPRSTSLESLTVSYNF
MMEDAAQALLKGAAGSHMPLREIHCEGNLFDDDMCGLIAHMLKHRDKTRT
PIVHTPPSDGAPDGMPCRSPLAKGATDSPIKTTPSPGKGEARFDGSSPCD
DVSDPRDKGVAVSAGVVVTGAGIGRNTQASPNVWQSPPRVKRVSGEGERL
PTLARCSSAGRKLRRRRQGAGLSSSYLAAAIGCPISTPAAVNETAGRVAG
QDSDQHRSSKAETDSISDLFRMGLDFGQKRFRGARVGGHLQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf