mRNA_L-elsbetiae_contig5399.13610.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5399.13610.1
Unique NamemRNA_L-elsbetiae_contig5399.13610.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5399.13610.1 vs. uniprot
Match: A0A6H5KAC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.700e-21
Identity = 83/211 (39.34%), Postives = 110/211 (52.13%), Query Frame = 1 
Query:    1 NGAVGRGAGWHGLMLYRPPGISQKSPVFQQALQLAAIAFSPDVRHPPVAATPVLPCHEPTPNRVSKSSRLKPPLTPTATFDGLSQSSSGRGSISCARRQRD-------PARLVGCKKERSGSPHKSPPQLFSDF-TFAGTTGGEGEEEIAGVEPSSDVCCAP-------VAKSLTPAGPLKKTTSVDGTISMTPASLHASLQPARLFDSGD 588
            N A GR  GWHGL LYR PG+ Q+S VFQQALQL  IAFSPDV+ PP +  P  PC     +R+  +S ++P   P   F    QS+S R +++C  ++R        P R  G +K R+    K  P+ + +  + A T   E E+E             P       V KS TP+ P   TT  DG+IS+TPA LH +   + LFDSGD
Sbjct:  300 NDAAGRVRGWHGLTLYRSPGVDQRSAVFQQALQLETIAFSPDVQTPPRSTPPESPCRGLGSSRMYDASSVRP--QPATAFCHR-QSASCR-ALACRDQERIGLGMSSLPERGAGRQKRRTDIASKPRPRPWDELESLARTPRVETEQEQQVRVVGGTYFATPPELHRYGVVKS-TPSPPQFTTTKPDGSISVTPAPLHVASAASTLFDSGD 505
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5399.13610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAC9_9PHAE5.700e-2139.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5399contigL-elsbetiae_contig5399:6743..7538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size589
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.1471188-CDS-L-elsbetiae_contig5399:6742..67921622816563.1471188-CDS-L-elsbetiae_contig5399:6742..6792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 6743..6792 +
1691683649.6549437-CDS-L-elsbetiae_contig5399:6742..67921691683649.6549437-CDS-L-elsbetiae_contig5399:6742..6792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 6743..6792 +
1622816563.1607432-CDS-L-elsbetiae_contig5399:7000..75381622816563.1607432-CDS-L-elsbetiae_contig5399:7000..7538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 7001..7538 +
1691683649.6663353-CDS-L-elsbetiae_contig5399:7000..75381691683649.6663353-CDS-L-elsbetiae_contig5399:7000..7538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 7001..7538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5399.13610.1prot_L-elsbetiae_contig5399.13610.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5399 6743..7538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5399.13610.1

>prot_L-elsbetiae_contig5399.13610.1 ID=prot_L-elsbetiae_contig5399.13610.1|Name=mRNA_L-elsbetiae_contig5399.13610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
NGAVGRGAGWHGLMLYRPPGISQKSPVFQQALQLAAIAFSPDVRHPPVAA
TPVLPCHEPTPNRVSKSSRLKPPLTPTATFDGLSQSSSGRGSISCARRQR
DPARLVGCKKERSGSPHKSPPQLFSDFTFAGTTGGEGEEEIAGVEPSSDV
CCAPVAKSLTPAGPLKKTTSVDGTISMTPASLHASLQPARLFDSGD
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mRNA from alignment at L-elsbetiae_contig5399:6743..7538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5399.13610.1 ID=mRNA_L-elsbetiae_contig5399.13610.1|Name=mRNA_L-elsbetiae_contig5399.13610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=796bp|location=Sequence derived from alignment at L-elsbetiae_contig5399:6743..7538+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGCGCAGTGGGAAGGGGCGCGGGTTGGCATGGCTTGATGTTGTACAG
GTAGGTTGCTGGAAAATACGGAAAGTGTTTTATCACTGAGGTCTGCTTGA
CACTCAGCACTTCGTGGAACAGGCGAGCATGCGTGTAGGAGGATGCGATG
TATGATGTGCGTCGTTCCCTTCCGTTTTCACGGCGAACCTTTCCCGGCCC
CGCACAAGGTTCGTTTTACACTCTGAACCCTGCTCTACATTATTGCTTAC
GTGGGCAGGCCGCCGGGCATCAGCCAAAAGTCTCCAGTCTTCCAGCAAGC
CCTTCAGCTCGCGGCGATCGCCTTCAGCCCAGACGTGCGGCATCCCCCGG
TCGCTGCGACACCAGTCCTGCCATGCCATGAACCAACTCCCAACCGAGTA
TCCAAATCAAGCCGTCTCAAGCCTCCGCTTACTCCAACTGCGACTTTTGA
CGGATTGTCGCAGTCTTCCTCAGGAAGAGGATCTATCTCTTGTGCCCGAA
GACAAAGAGACCCAGCACGCCTAGTAGGTTGTAAAAAAGAGCGGAGTGGT
TCCCCACATAAGTCACCTCCTCAGCTGTTCAGTGACTTTACTTTTGCTGG
AACGACGGGAGGGGAGGGGGAGGAAGAGATCGCAGGAGTGGAACCATCTT
CCGATGTGTGTTGTGCTCCTGTAGCGAAATCGTTAACCCCTGCCGGGCCT
TTGAAAAAAACCACGAGTGTTGATGGGACCATATCGATGACGCCGGCGTC
ACTGCACGCTTCCTTGCAGCCCGCCAGGCTGTTCGATAGCGGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5399:6743..7538+

>mRNA_L-elsbetiae_contig5399.13610.1 ID=mRNA_L-elsbetiae_contig5399.13610.1|Name=mRNA_L-elsbetiae_contig5399.13610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig5399:6743..7538+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGCGCAGTGGGAAGGGGCGCGGGTTGGCATGGCTTGATGTTGTACAG
AACGGCGCAGTGGGAAGGGGCGCGGGTTGGCATGGCTTGATGTTGTACAG
GCCGCCGGGCATCAGCCAAAAGTCTCCAGTCTTCCAGCAAGCCCTTCAGC
TCGCGGCGATCGCCTTCAGCCCAGACGTGCGGCATCCCCCGGTCGCTGCG
ACACCAGTCCTGCCATGCCATGAACCAACTCCCAACCGAGTATCCAAATC
AAGCCGTCTCAAGCCTCCGCTTACTCCAACTGCGACTTTTGACGGATTGT
CGCAGTCTTCCTCAGGAAGAGGATCTATCTCTTGTGCCCGAAGACAAAGA
GACCCAGCACGCCTAGTAGGTTGTAAAAAAGAGCGGAGTGGTTCCCCACA
TAAGTCACCTCCTCAGCTGTTCAGTGACTTTACTTTTGCTGGAACGACGG
GAGGGGAGGGGGAGGAAGAGATCGCAGGAGTGGAACCATCTTCCGATGTG
TGTTGTGCTCCTGTAGCGAAATCGTTAACCCCTGCCGGGCCTTTGAAAAA
AACCACGAGTGTTGATGGGACCATATCGATGACGCCGGCGTCACTGCACG
CTTCCTTGCAGCCCGCCAGGCTGTTCGATAGCGGGGACGCCGCCGGGCAT
CAGCCAAAAGTCTCCAGTCTTCCAGCAAGCCCTTCAGCTCGCGGCGATCG
CCTTCAGCCCAGACGTGCGGCATCCCCCGGTCGCTGCGACACCAGTCCTG
CCATGCCATGAACCAACTCCCAACCGAGTATCCAAATCAAGCCGTCTCAA
GCCTCCGCTTACTCCAACTGCGACTTTTGACGGATTGTCGCAGTCTTCCT
CAGGAAGAGGATCTATCTCTTGTGCCCGAAGACAAAGAGACCCAGCACGC
CTAGTAGGTTGTAAAAAAGAGCGGAGTGGTTCCCCACATAAGTCACCTCC
TCAGCTGTTCAGTGACTTTACTTTTGCTGGAACGACGGGAGGGGAGGGGG
AGGAAGAGATCGCAGGAGTGGAACCATCTTCCGATGTGTGTTGTGCTCCT
GTAGCGAAATCGTTAACCCCTGCCGGGCCTTTGAAAAAAACCACGAGTGT
TGATGGGACCATATCGATGACGCCGGCGTCACTGCACGCTTCCTTGCAGC
CCGCCAGGCTGTTCGATAGCGGGGAC
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