mRNA_L-elsbetiae_contig5398.13608.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5398.13608.1
Unique NamemRNA_L-elsbetiae_contig5398.13608.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5398.13608.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 6.100e-26
Identity = 47/81 (58.02%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:  119 YAADIHMVHVKDGTDSELPVVGIMYETSEYGDNLEIANLWNVLDMSEATTDEVFATAVYDLVPAGMSFSHYIRSLTTPPCT 361
            + A+IH VHVK GTD +L V+G++++T++YG N+EI +LW+VLD+ + TTDEVF T VYD++P+   FSHY+ SLTTPPCT
Sbjct:    7 HEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCT 87
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BLAST of mRNA_L-elsbetiae_contig5398.13608.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 114 bits (284), Expect = 4.440e-25
Identity = 50/100 (50.00%), Postives = 73/100 (73.00%), Query Frame = 2 
Query:   62 HAPAPHPLSFRAHDWRCGVYAADIHMVHVKDGTDSELPVVGIMYETSEYGDNLEIANLWNVLDMSEATTDEVFATAVYDLVPAGMSFSHYIRSLTTPPCT 361
            H+P+ H +    H       +A+IH VHVK+GT+ +L VVG++++T++YG N+EI +LW+VLD+ E TT EVF T +YD++P+   FSHY+ SLTTPPCT
Sbjct:  141 HSPSEHMIGGSEH-------SAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCT 233
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BLAST of mRNA_L-elsbetiae_contig5398.13608.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.120e-19
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2 
Query:   62 HAPAPHPLSFRAHDWRCGVYAADIHMVHVKDGTDSELPVVGIMYETSEYGDNLEIANLWNVLDMSEATTDEVFATAVYDLVPAGMSFSHYIRSLTTPPCT 361
            H+P+ H L    H       AA+IH+VH+K  T   L VVGIM+E S+YG N+E+  +WNV+D+++   +E F  A Y L+PA  SF+ Y  SLTTPPCT
Sbjct:  146 HSPSEHVLGGAEH-------AAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCT 238
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BLAST of mRNA_L-elsbetiae_contig5398.13608.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 75.9 bits (185), Expect = 1.140e-11
Identity = 39/103 (37.86%), Postives = 62/103 (60.19%), Query Frame = 2 
Query:   62 HAPAPHPLSFRAHDWRCGVYAADIHMVHVKD---GTDSELPVVGIMYETSEYGDNLEIANLWNVLDMSEATTDEVFATAVYDLVPAGMSFSHYIRSLTTPPCT 361
            H+P+ H ++   HD       A+IH+VH +D   GT+SEL V+G+  +  E+G N+ +  LW+VL         +     Y+L+P+ M++SHY+ SLTTPPC+
Sbjct:  148 HSPSEHMVAGSLHD-------AEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSGAKPRGVINP---YELIPSDMAYSHYMGSLTTPPCS 240
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BLAST of mRNA_L-elsbetiae_contig5398.13608.1 vs. uniprot
Match: A0A7S4D4V5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4V5_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 4.080e-6
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:  113 GVYAADIHMVHVKDGTDSELPVVGIMYETSEYGDNLEIANLWNVLDMSEATTD-EVFATAVYD----LVPAGMSFSHYIRSLTTPPCT 361
            G + A++H+VH     DS L V+G+M++  +YG N      WN      +T D EV  ++  D    ++PA +S+ H+  SLTTPPC+
Sbjct:  144 GYFDAEMHLVHAD--ADSNLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCS 229
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BLAST of mRNA_L-elsbetiae_contig5398.13608.1 vs. uniprot
Match: A0A7S3XPW5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW5_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 5.330e-6
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:  113 GVYAADIHMVHVKDGTDSELPVVGIMYETSEYGDNLEIANLWNVLDMSEATTD-EVFATAVYD----LVPAGMSFSHYIRSLTTPPCT 361
            G + A++H+VH     DS L V+G+M++  +YG N      WN      +T D EV  ++  D    ++PA +S+ H+  SLTTPPC+
Sbjct:  170 GYFDAEMHLVHAD--ADSNLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCS 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5398.13608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Q9SMD6_9PHAE6.100e-2658.02Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
F6MHT6_SACJA4.440e-2550.00Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI4.120e-1947.00Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A872YNN4_SACJA1.140e-1137.86Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
A0A7S4D4V5_HETAK4.080e-636.36Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
A0A7S3XPW5_HETAK5.330e-636.36Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5398contigL-elsbetiae_contig5398:2250..5455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D8LB10
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons5
Model size1291
Cds size240
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.9448063-UTR-L-elsbetiae_contig5398:2249..23501622816562.9448063-UTR-L-elsbetiae_contig5398:2249..2350Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5398 2250..2350 +
1691683649.521746-UTR-L-elsbetiae_contig5398:2249..23501691683649.521746-UTR-L-elsbetiae_contig5398:2249..2350Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5398 2250..2350 +
1622816562.9589658-UTR-L-elsbetiae_contig5398:2601..26361622816562.9589658-UTR-L-elsbetiae_contig5398:2601..2636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5398 2602..2636 +
1691683649.5346305-UTR-L-elsbetiae_contig5398:2601..26361691683649.5346305-UTR-L-elsbetiae_contig5398:2601..2636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5398 2602..2636 +
1622816563.0128558-UTR-L-elsbetiae_contig5398:3556..36451622816563.0128558-UTR-L-elsbetiae_contig5398:3556..3645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5398 3557..3645 +
1691683649.5776246-UTR-L-elsbetiae_contig5398:3556..36451691683649.5776246-UTR-L-elsbetiae_contig5398:3556..3645Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5398 3557..3645 +
1622816563.0255673-UTR-L-elsbetiae_contig5398:4629..54551622816563.0255673-UTR-L-elsbetiae_contig5398:4629..5455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5398 4630..5455 +
1691683649.5982893-UTR-L-elsbetiae_contig5398:4629..54551691683649.5982893-UTR-L-elsbetiae_contig5398:4629..5455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5398 4630..5455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.9763973-CDS-L-elsbetiae_contig5398:2636..27231622816562.9763973-CDS-L-elsbetiae_contig5398:2636..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5398 2637..2723 +
1691683649.5446033-CDS-L-elsbetiae_contig5398:2636..27231691683649.5446033-CDS-L-elsbetiae_contig5398:2636..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5398 2637..2723 +
1622816562.9910707-CDS-L-elsbetiae_contig5398:2966..31131622816562.9910707-CDS-L-elsbetiae_contig5398:2966..3113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5398 2967..3113 +
1691683649.5546098-CDS-L-elsbetiae_contig5398:2966..31131691683649.5546098-CDS-L-elsbetiae_contig5398:2966..3113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5398 2967..3113 +
1622816563.0009358-CDS-L-elsbetiae_contig5398:3550..35561622816563.0009358-CDS-L-elsbetiae_contig5398:3550..3556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5398 3551..3556 +
1691683649.5644417-CDS-L-elsbetiae_contig5398:3550..35561691683649.5644417-CDS-L-elsbetiae_contig5398:3550..3556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5398 3551..3556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5398.13608.1prot_L-elsbetiae_contig5398.13608.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5398 2637..3556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5398.13608.1

>prot_L-elsbetiae_contig5398.13608.1 ID=prot_L-elsbetiae_contig5398.13608.1|Name=mRNA_L-elsbetiae_contig5398.13608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MVHVKDGTDSELPVVGIMYETSEYGDNLEIANLWNVLDMSEATTDEVFAT
AVYDLVPAGMSFSHYIRSLTTPPCTCTPG*
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mRNA from alignment at L-elsbetiae_contig5398:2250..5455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5398.13608.1 ID=mRNA_L-elsbetiae_contig5398.13608.1|Name=mRNA_L-elsbetiae_contig5398.13608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3206bp|location=Sequence derived from alignment at L-elsbetiae_contig5398:2250..5455+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGCCGCTTGACGGGTGCATGGACGTCCCTTACCTGATGTTGCAGGGT
GAAAACTGGAACATGCCCCAGCTCCACATCCACTCTCCTTCCGAGCACAC
GGTGAGGCCTCACGAAGATACATTGGCTATCAAACCAACTATGCACAGTC
AAGGCTGAACCGGAAGCTGGGGTTGGGAAGTTGCTGCAAAATTGCGGCGT
TGTGCTCTGTTTGCACCCGGCGGGGTTCCACAAAACATATGTACAATTTG
CGCCTGCTGCTGCTGGGAAACCAGCTCGATTCTCATGGCCCTTACATCGT
GCGTTCACGGCGCAGCAACCATCGCAATTTATGTCCCTGCCAATGGTGGC
AGATTGGCGGTGCGGGGTGTATGCCGCAGACATCCACATGGTCCACGTCA
AGGATGGCACGGACTCCGAATTGCCCGTGGTGGGGATCATGTACGAAACC
AGCGAGTATGGCGACAACCTCGAGGTGGGAACGAACGCCGCTGTCGTACG
AACTGCTGAATGCGGTATCTATCCATTGGCGCCCTTCTACTGTATTTTGC
CGGCTCTTTCACCCCTTGTAGCCCGCCAGGAAAGGCTGAGAAGAGAAGAA
AGGGCAAGCAGGGGGGATCTAGTGACTCTCCGTCCGCACAGCAGTATCCG
CGCAGCAGCGGTACCTGAGCACGCCGCCCCCCGCCCTCCCCCGCTGTTCG
CTCCTCGCATCGAGCAGATCGCAAACCTGTGGAACGTCTTGGACATGAGC
GAAGCCACCACGGACGAAGTCTTCGCAACGGCGGTGTACGATCTGGTCCC
CGCCGGCATGAGCTTCTCGCACTACATTAGATCGCTGACCACGCCCCCCT
GTACCTGCACCCCGGTGAGTTATGCGGTCCCGTTCGGTACAACACTGCAG
CAGAATATTGGGGCTATGTACATGAACGTTTTTTAACCGTCCGGTTTGTC
CGGCTTTCAGACAAACCATGTGCACACAGGGAAGCTGGTTGTTCCCTTCT
GTTTCGTCGCCCGACGAAGCGCTTGGTCCATAAACGGCGAACTTCCAACA
CGCGACACGGTGTAATATTGTTGATATAATTTGATGAAGGCGTACATAGC
TTTCGCGTACGGAAGCTGACAGTTAATTAAGAAAGTCAGGGGTCATTATA
TATATGTGTGGTGTGTGTTTTTAATTGTATTTATTTATTTTCTGGTTTGG
GTGACGGAACATCCGATGTTGCTCCGTACATACGCTTGGAACCTCACACT
GTTGTTGCAATATCCCGGGTATGTTTGGTGTGAATGGCATGGCGGTGCAA
GGGGTGATGTGGGTCGTGATGAATGAGCCGAGCTTCCTGGGCAAGCGGCA
GCTAGACGAGTTCCGCCGCTCAGTCGCCCTCTACCCCGGATCCAAGGTGA
GGGACATTGCTGTCTGCCTTCCCACTGCTTTGGCTTGCAGAAGGGGCGGA
AGAACGAACGTGCTCACCGCTTATGTTGCATCTTAAGGCTGACCTCCGCC
ACGTGGCTAAGGGGAAAAGGCCGAATCCCAGAAAAGGCGAAGAGGCATGT
TGTGTTTTGTGGTCCGCACCCAGCAAAAACTGACGTATTTAGCAGGAGGT
CGATCAAACATAAAATTTGGCAGTTATATAGCGGTGCAACCGTTTTATTG
TCTCTTTTCGCTATTACACTAAGCGCCATCGCAATTTAGAATGGAGCACA
TTCTCCTTGGCCAGTAGGTTGATCTAGTTGATATATATATCGAAAGCTAA
GGAGAACAGCTGCCATCGCGTAGCCTTCGTTTCTTTAGCGGTGCTGTAGA
GCGTTAGCTATCCTCTGTTCTGCGTAGAATGTCTAAACCCACCGCTGTAA
AGCTCTTGACATGGCAAACGTCACTGTCATTTCAAAACGGGGCTGCCACC
GCTGCTGAGGACGCCAGAGATTGCTCTAAGGTACACCTTTGTCTCCTCGT
AGCCTCTGGTTGGGTGTACCGGTCATGGCGTCCGCCGCCATAGGCTGAGG
TCGGAGTTTGGCCGCATATTTACAGCCGTTCCAAGTGAGCGAAAAATGCT
CTTTTGTCACGCCGCCACTAAAAGCGCAAGGATCTGTTTGAAGCCTGCCC
CCCGGCTATGTTACTCTTTTGGGATGCCCTTCGACGTATCTCTTAGCCTA
CCGGCCAAGATCATGGTGCCCCATTTTTGAAAATCGTCGGGCATTTCGAC
AACTTGCTGGTTTTAAAATCAAGATAAAAAAATGATCTAGATTGTACAGT
AACCCAAAGGCAGCGGTACTCTTCTTACTACTGTTGTGACGGCGGTAGGA
TTCGCGGCTCCGGATATCGCTATTGCGCAACGCCCGCCACCCCCTTCGCC
CCGACTCCCGTCCGATTCATGAACCCATAGGTGGACAAGCTTGGCAACAC
CAACCGCCCGGCCCAGCCCCTTAACGGCCGCGCCTTGAACTACGTGTTGC
CTTAAGCGGGCCCACCGACAAATCACGAGCTGCCCCCTGGAGCACCAGCA
CCTACCTGCCCATCACCCCGGGAGCGCGAAACAGACCGCCCACCTTTGCC
CTTGCTCCGGCGTTATTGCGCTAAATTACATGTCGTTGGACTATTTGGAT
ATCTAGATGTATTTTGTTTAGCTTTCTCTCGCGGGCGTAAGACTGATGCG
CTTACTAAATATGTGTGTACGTGTCCATGATGTATCACAAAAAAATCTAT
CACTTCGTTGTGTTTAACGCATCGTTCTTTATGTTGTAGCGTTTGCTTGG
TGGGGTCGGGATTTTCGTTTTGCGCTTGAGAAAGTTCTCTTGAATGTGTA
GAAGGGGCGACACAAAATAAGAACCGCCTAATCCAGGGTCCACCTAGAGA
GCAATTCTGGACATATAGAACAAGCCACAATATCGATATTTTGGGTTTTG
GGGGCCAAAACAGCCTAGCACCTCCTAGTTGTCCCCGAGGGGTTGACGTG
TGCGGTCAGTCGTTGTTTACAGATCTATTGTCCGTCGGGGACAATTTGTC
CATTCACGTTTTTTTGTCGTAACTTTCGAAAAGAAAATAATTAGACCGCT
TTTCAGGTATGGTACATAGTGATCCCCGCAGCAAGGCGAGAAAAAAACAT
TGTAAAAACATTTTGGACGCTTCTACCTAAATTCAACGTCGTGTATGAAG
CGGATGTAGCAGGCGCGCCGCGGGACTGCCATCAACCCTCCTGTAGCGTG
TGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5398:2250..5455+

>mRNA_L-elsbetiae_contig5398.13608.1 ID=mRNA_L-elsbetiae_contig5398.13608.1|Name=mRNA_L-elsbetiae_contig5398.13608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig5398:2250..5455+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCACGTCAAGGATGGCACGGACTCCGAATTGCCCGTGGTGGGGAT
CATGTACGAAACCAGCGAGTATGGCGACAACCTCGAGATGGTCCACGTCA
AGGATGGCACGGACTCCGAATTGCCCGTGGTGGGGATCATGTACGAAACC
AGCGAGTATGGCGACAACCTCGAGATCGCAAACCTGTGGAACGTCTTGGA
CATGAGCGAAGCCACCACGGACGAAGTCTTCGCAACGGCGGTGTACGATC
TGGTCCCCGCCGGCATGAGCTTCTCGCACTACATTAGATCGCTGACCACG
CCCCCCTGTACCTGCACCCCGATCGCAAACCTGTGGAACGTCTTGGACAT
GAGCGAAGCCACCACGGACGAAGTCTTCGCAACGGCGGTGTACGATCTGG
TCCCCGCCGGCATGAGCTTCTCGCACTACATTAGATCGCTGACCACGCCC
CCCTGTACCTGCACCCCGGGGTGAGGGTGA
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