prot_L-elsbetiae_contig5393.13606.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5393.13606.1
Unique Nameprot_L-elsbetiae_contig5393.13606.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length140
Homology
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 2.030e-70
Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 0
Query:    1 QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSPLPFAQ 139
            +VE+ YR LSEFV +SWELYRPELEAV FPVFVHCYLTLVMFDHG EA+ LMRAWGGEHE R+KDEM LLKMVTA+EHAEAS +C+LV TH FR K+C +TSKLLNAFLVN GLLLVMHILNTRV FVLEERSPLPFAQ
Sbjct:  105 KVEQAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLVLTHKFRVKICLATSKLLNAFLVNKGLLLVMHILNTRVQFVLEERSPLPFAQ 243          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A6H5JEL6_9PHAE (TFIID_NTD2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL6_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.200e-43
Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = 0
Query:    1 QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLV 88
            +VE+ YR LSEFV +SWELYRPELEAV FPVFVHCYLTLVMFDHG EA+ LMRAWGGEHE R+KDEM LLKMVTA+EHAEAS +C+LV
Sbjct:  105 KVEQAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLV 192          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: I2CPL9_NANGC (Transcription initiation factor tfiid subunit (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPL9_NANGC)

HSP 1 Score: 93.6 bits (231), Expect = 8.990e-21
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 0
Query:    4 REYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEA-SGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSPLP 136
            R Y  L  +  ++ E Y+PEL  V FPVFVH YL LV     E A++ ++ WG +H   Y+ E++ L  V   +H  A +GF +   T  F  ++C  + +LL +FL +  LLL+M ILN +V  V+EER P+P
Sbjct:   87 RNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMP 220          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A5D6XMW3_9STRA (TFIID_NTD2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMW3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.550e-17
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 0
Query:    3 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 134
            E  Y  L E++ +S ++Y+ EL AV FP+FVHC+L LV     E A + +R    +H   +  E++LL MV    H  AS + Q V    F  ++   + +LLNAFL +  L L++ ILN RV+ ++    P
Sbjct:  145 EHAYTQLMEWICNSLDMYKYELHAVAFPMFVHCFLELVAKGFAEHASAFLRRHAADHTRLHLAELRLLSMVLTPAHVRASEYAQQVLHSKFNVQMSLLSFELLNAFLGHEQLFLLLAILNERVNLIVTANQP 276          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A067CL81_SAPPC (TFIID_NTD2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CL81_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 9.850e-16
Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 0
Query:    3 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 134
            E  Y  L +++G++ ++Y+ EL A+ FP+FVHCYL LV     E AK+  R    +HE  ++ E++ L  V  +EH   + + + V    F+ K+   T +LL+ FL +  + L+++ILN RV+  +    P
Sbjct:   72 EHAYSKLLQWIGNALDMYKLELHAIAFPLFVHCYLELVAKGFTEPAKAFFRRHAKDHERLHRLELRQLGCVLTREHLTLNEYAKQVLHAKFQVKLSLLTFQLLHTFLSDYQMFLLLYILNERVNIAVTSNHP 203          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A6A5ANV2_9STRA (TFIID_NTD2 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ANV2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.610e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 0
Query:    3 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 134
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:   64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQANHP 195          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: W4GZ94_9STRA (TFIID_NTD2 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZ94_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.250e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 0
Query:    3 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 134
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:   64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 195          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: W4GXC9_9STRA (TFIID_NTD2 domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXC9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.600e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 0
Query:    3 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 134
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:   64 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 195          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A397A515_9STRA (TFIID_NTD2 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A515_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.850e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 0
Query:    3 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 134
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:    6 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 137          
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Match: A0A425D3R2_9STRA (TFIID_NTD2 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D3R2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.970e-15
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 0
Query:    3 EREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKSLMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWSTSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSP 134
            ER Y +L  ++G+S ++Y+ EL AV FP+FVHCYL LV   H + AK+       +H+  +K E++ L  V  +EH   + + + V    F  ++     +LL+ FL +  + L++ ILN RV+  ++   P
Sbjct:   60 ERAYTTLLAWIGNSLDMYKLELHAVAFPLFVHCYLELVAKGHADAAKAYFTRHAKDHQRLHKHEIRSLGSVLTREHLGLNEYAKQVLHSKFHVQLSLLGFQLLHTFLSDHQMFLLLCILNDRVTISVQTNHP 191          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5393.13606.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXT3_ECTSI2.030e-7082.01TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JEL6_9PHAE1.200e-4380.68TFIID_NTD2 domain-containing protein (Fragment) n=... [more]
I2CPL9_NANGC8.990e-2139.55Transcription initiation factor tfiid subunit (Fra... [more]
A0A5D6XMW3_9STRA4.550e-1736.36TFIID_NTD2 domain-containing protein n=1 Tax=Pythi... [more]
A0A067CL81_SAPPC9.850e-1633.33TFIID_NTD2 domain-containing protein n=2 Tax=Sapro... [more]
A0A6A5ANV2_9STRA2.610e-1533.33TFIID_NTD2 domain-containing protein n=4 Tax=Aphan... [more]
W4GZ94_9STRA8.250e-1533.33TFIID_NTD2 domain-containing protein n=1 Tax=Aphan... [more]
W4GXC9_9STRA8.600e-1533.33TFIID_NTD2 domain-containing protein n=6 Tax=Aphan... [more]
A0A397A515_9STRA8.850e-1533.33TFIID_NTD2 domain-containing protein (Fragment) n=... [more]
A0A425D3R2_9STRA8.970e-1533.33TFIID_NTD2 domain-containing protein n=5 Tax=Aphan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007582TFIID subunit TAF5, NTD2 domainPFAMPF04494TFIID_NTD2coord: 2..124
e-value: 2.8E-30
score: 105.2
IPR037264TFIID subunit TAF5, NTD2 domain superfamilyGENE3D1.25.40.500coord: 1..130
e-value: 1.1E-30
score: 108.8
IPR037264TFIID subunit TAF5, NTD2 domain superfamilySUPERFAMILY160897Taf5 N-terminal domain-likecoord: 1..128
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 4..134
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..103
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 122..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..121
NoneNo IPR availableTMHMMTMhelixcoord: 104..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5393contigL-elsbetiae_contig5393:5241..7559 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5393.13606.1mRNA_L-elsbetiae_contig5393.13606.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5393 5240..7559 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5393.13606.1 ID=prot_L-elsbetiae_contig5393.13606.1|Name=mRNA_L-elsbetiae_contig5393.13606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
QVEREYRSLSEFVGSSWELYRPELEAVTFPVFVHCYLTLVMFDHGEEAKS
LMRAWGGEHEARYKDEMKLLKMVTAKEHAEASGFCQLVFTHTFRAKVCWS
TSKLLNAFLVNTGLLLVMHILNTRVSFVLEERSPLPFAQA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007582TFIID_NTD2
IPR037264TFIID_NTD2_sf