mRNA_L-elsbetiae_contig5392.13604.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5392.13604.1
Unique NamemRNA_L-elsbetiae_contig5392.13604.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: D7FHF9_ECTSI (U2 small nuclear ribonucleoprotein auxiliary factor large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF9_ECTSI)

HSP 1 Score: 540 bits (1390), Expect = 6.890e-185
Identity = 278/302 (92.05%), Postives = 288/302 (95.36%), Query Frame = 1
Query:  547 MLKIGRPSKYQSPVAPAST*QRLIGQESADNVVDPATKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEEKFNSRIFNETGNDEATQAAAAATNGSA 1452
            MLKIGRPSKYQ P  P+ST QRL GQESADNVVDP+TKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECR++EE+TALLNLNNIPFLGQ ELKINRPSKYPGP+TPHLNWPDVLARFTSGNP AALPAPATTFGGIESAQAAAQAAVAALVVN+P PTTTLRLNNMLTA DL DESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSE EKPGVG+VFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDE+KFN R+FNETGNDEA QAAAA TNGSA
Sbjct:    1 MLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPSTKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRTVEETTALLNLNNIPFLGQ-ELKINRPSKYPGPDTPHLNWPDVLARFTSGNPNAALPAPATTFGGIESAQAAAQAAVAALVVNMPRPTTTLRLNNMLTAGDLADESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEAEKPGVGYVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEDKFNDRVFNETGNDEAVQAAAA-TNGSA 300          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 348 bits (892), Expect = 5.970e-107
Identity = 183/355 (51.55%), Postives = 249/355 (70.14%), Query Frame = 1
Query:  319 DKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQESAD--NVVDPATKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEEKF 1377
            DK  RELFVGNTP GTS+ VL+EFLNAA+ QV LTT+PGNP++ CRV+NK+AF++LRS+E   N L+LNGIPFM Q+LKIGRP+KY  PV  AST Q L GQ++ +  +VVDP+TK+YRELYIG+T+ +MT++ L++FL + MQ+VG + +EG+PI+  R SG FAFVE RSIEE+   LNLN+IPF+GQ  LKI RPSKYPGP+ PHLNW DVLA++ +G     +P    T GG    Q                P+  + L+NM+T  +L D++++ +I E+T++EC K+G+V+S+ IPRP         GVG VF+ F +   A+KA  +L+ RTF G KV+  Y+ E K+
Sbjct:  203 DKAFRELFVGNTPPGTSELVLMEFLNAALNQVKLTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASVVDPSTKLYRELYIGSTTAEMTELGLQEFLGTAMQQVGLTLQEGNPIVQVRHSGTFAFVELRSIEEANNCLNLNSIPFMGQF-LKIGRPSKYPGPQVPHLNWEDVLAKYMAGE----MP----TGGGAAQQQ----------------PSRVIALSNMVTTDELMDDTTYQEIVEDTRDECGKYGAVQSMEIPRPGAPH-----GVGKVFIEFTSTADAAKAIGALKGRTFAGNKVDARYFPESKY 527          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A7S4D6W7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 336 bits (861), Expect = 3.950e-102
Identity = 185/394 (46.95%), Postives = 255/394 (64.72%), Query Frame = 1
Query:  319 DKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQESADN----VVDPATKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLP-------------NPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEEKFNSRIFNETGNDEATQAAAAATNGS 1449
            DKT RELFVGNTP GTS+ VL+EFLNAAM QV      GNP+++CR++ K+AF++LR++E   N LNLNGIPFM   LK+GRP+KY  P+ PA T Q+L GQ    +     VDP TK+YR+LY+GN SP+MT+  LK+FL S M++VG +Q+EG+ I+  R+SG FAF+E RS+EE++ ++NLN IPF+GQ  LKI RP+KYPGPE PHLNW D+LA++ +G   A    PA          AAA AAV +                    P+  + L+NM+T  DL D+ ++ +I E+T++EC KFG+V+++ IPRP    ++   GVG VFV + + + A KA  +L  RTF G  VE  Y+ E K+ ++ F+    + A  AAAA   GS
Sbjct:   53 DKTKRELFVGNTPPGTSEVVLMEFLNAAMIQVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQF-LKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKPKMPAV---------AAAPAAVPSXXXXXXXXXXXXXXXAGPGTPSKVMTLSNMVTHDDLADDETYDEILEDTQDECSKFGAVQTIAIPRP----KDGPHGVGLVFVHYSSEEEAKKAIDALSGRTFAGNTVEAKYFPEAKYLAKDFSP---EPAAGAAAAPPGGS 429          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A835ZHK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA)

HSP 1 Score: 333 bits (853), Expect = 1.800e-101
Identity = 193/365 (52.88%), Postives = 234/365 (64.11%), Query Frame = 1
Query:  319 DKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQ-ESADNVV-----------DPATKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKE-GSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTS--GNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTT---SEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTY 1359
            DKT  ELFVGNTP  TS+FVLL FLNAAM QVNL T+PGNP+V CRV+NK+AF++LRS +   N L+LN IPFM   LKIGRPSKY+ P    +T Q L GQ E A   +           DPATKVYRELY+GN  P MT+  + +FL +T+QKVG +    G+P++ AR SGNF+F+E RSIE++ A+LNLN IPF+G   L+I+RP+KY GP TP + WPDVLAR  +  G    AL  PA          A  Q A           T  LRLNNML+A DL DE    DIEEETK EC  FG VK VHI RPSTT   +E+   GVG+VFV F+  D+A KA  SL  RTFD +K+   Y
Sbjct:   44 DKTQLELFVGNTPPNTSEFVLLNFLNAAMAQVNLNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYRELYVGNVQPTMTEASIAEFLGTTLQKVGLATSAPGNPVVIARSSGNFSFIEMRSIEDANAMLNLNGIPFMGST-LRISRPAKYAGPMTPAMTWPDVLARLVAQGGGADKALGTPA----------APTQPA-----------TRVLRLNNMLSADDLADEEGLADIEEETKGECATFGPVKKVHIVRPSTTDAAAEKTATGVGYVFVEFEEADAARKAMLSLSTRTFDNKKLSSVY 386          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A7S3XTW3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK)

HSP 1 Score: 311 bits (798), Expect = 1.110e-94
Identity = 166/345 (48.12%), Postives = 229/345 (66.38%), Query Frame = 1
Query:  319 DKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQESADN----VVDPATKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLP-------------NPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASK 1302
            DKT RELFVGNTP GTS+ VL+EFLNAAM QV      GNP+++CR++ K+AF++LR++E   N LNLNGIPFM   LK+GRP+KY  P+ PA T Q+L GQ    +     VDP TK+YR+LY+GN SP+MT+  LK+FL S M++VG +Q+EG+ I+  R+SG FAF+E RS+EE++ ++NLN IPF+GQ  LKI RP+KYPGPE PHLNW D+LA++ +G   A    PA          AAA AAV +                    P+  + L+NM+T  DL D+ ++ +I E+T++EC KFG+V+++ IPRP    ++   GVG VFV + + + A K
Sbjct:   53 DKTKRELFVGNTPPGTSEVVLMEFLNAAMIQVKQNIEEGNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYRDLYVGNCSPEMTEPALKEFLGSAMEQVGLNQQEGNCILQVRLSGTFAFIEVRSVEEASHMMNLNGIPFMGQF-LKIKRPTKYPGPEVPHLNWDDILAKYMAGELKAKPKMPAV---------AAAPAAVPSXXXXXXXXXXXXXXXAGPGTPSKVMTLSNMVTHDDLADDETYDEILEDTQDECSKFGAVQTIAIPRP----KDGPHGVGLVFVHYSSEEEAKK 383          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A7S4I336_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.120e-89
Identity = 175/421 (41.57%), Postives = 246/421 (58.43%), Query Frame = 1
Query:  154 GLPGQLVAADPDHALRSAAGLTPWTIDVTVSLPLGSGPGVGAVPGMLDGMGMGMGDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQESADNVVDPA--------TKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEEKFNSRIF 1392
            G+P   + A P        G+      V ++    + PG+G VP +L        DK  RELFVGNTP GTS+ +L++FL+ AM++  L    G+P+VTCRVN K+AFV+  + +    ALNLNGIPF+   LK+ RPSKY  P  P+ + Q L G    + +             K+ REL+IGNT+P+MT+ +L DFL   M++VG S+  G+PI+  R SG FAF+E R+ +E+ + LNLNNIP+LG Q L++ RPSKY GPETPH NW D+LA++ SG     L  P+   GG  +   AA  A+ A  V        + L  MLT  DLE++  + +I E+T EEC +FGS+K V IPR         PG   +F+ +   + A++A ASL  RTFDGRKV   Y+DE +F ++ +
Sbjct:   31 GVPNAGIPAVPMGGAMPGGGMAAMGQVVPLAGAASAIPGLG-VPPILAAQNAAQ-DKVNRELFVGNTPPGTSEMLLIQFLSGAMRRTGLCKPSGSPIVTCRVNQKFAFVECATVDCANRALNLNGIPFLGSCLKVSRPSKYAGPFVPSKSWQELTGTALPNGLAGAGGALAGSAEDKINRELFIGNTTPEMTEQMLSDFLGKAMEQVGLSKAPGNPIVTCRTSGKFAFIELRTTDEAASALNLNNIPYLGAQ-LRVGRPSKYTGPETPHGNWEDILAKYMSGE----LQLPSKDGGGGAAPAPAAPHAIDATCV--------VELCQMLTQQDLENDDEYKEILEDTTEECGQFGSLKRVVIPRSG-------PGATKIFLEYATKEDAARAIASLAGRTFDGRKVTAVYYDEARFAAQDY 429          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A448YVH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVH2_9STRA)

HSP 1 Score: 296 bits (758), Expect = 5.880e-89
Identity = 164/360 (45.56%), Postives = 230/360 (63.89%), Query Frame = 1
Query:  319 DKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQE-SADNVVDPAT-KVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEEKFNSRIF 1392
            +K  RELFVGNTP GTS+ +LL+FLN AM++V L      P++ CRVN+K+AFV+L S+E    ALN+NGIPF+  +LK+ RPSKY  P  PA T Q+L GQ   A  V+D    K+ REL++GNT+P+MT+ +L++FL + M++VG +   G+PI   RVSG FAFVE RS EE+   LNLNNIPF+G Q L++ RPSK+ GP   H NW DVLA++ SG   A   AP                  AA+  N+   T  + L NMLT  DL  E  + ++ E+T++EC+++G + +V+IP+        +PG   VF+ + + + ASKA  SL  RTFDG++VE T++DE KF ++ F
Sbjct:   70 EKINRELFVGNTPPGTSEMLLLQFLNGAMRRVKLCGEQETPILNCRVNSKFAFVELVSAEMANKALNMNGIPFLGAVLKVSRPSKYAGPHVPARTWQQLTGQALPAGTVLDAEQEKINRELFVGNTTPEMTERMLREFLGNAMEQVGLNVMPGNPITSCRVSGKFAFVELRSPEEAANALNLNNIPFMGAQ-LRVGRPSKWSGPPDSHGNWEDVLAKYMSGELQAGNTAPGQ--------------GAAAMNSNV-KATRVVELKNMLTXEDLSVEEEYNELVEDTEQECKQYGQLLNVYIPKKG------EPGATKVFLEYASTEDASKAIKSLEGRTFDGQRVEATFFDETKFMNKTF 407          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A7S4RDP7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RDP7_9STRA)

HSP 1 Score: 296 bits (759), Expect = 9.500e-89
Identity = 173/392 (44.13%), Postives = 229/392 (58.42%), Query Frame = 1
Query:  262 GPGVGAVPGMLDGMGM--------GMGDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQESA-------DNVVDPATKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEEKFNSRIF 1392
            G   GA+PGM+  M M           DK  RELFVGNTP GTS+ +L +FLN AM++  L  +   P++ CR N K+AFV+  S      ALNLNGIPFM   L++ RPSKY  P  P+ T Q L GQ          +N      KV REL+IGNT+P+MT+ +L DFL   M++VG +   G+PI   RVSG FAF+E RS EE+   LNLNNIP+LG Q L++ RPSKY G +TPH NW D+LA++ SG     L  P+         Q  A AA  A   N   PT  + L NMLT  +L  +  + +I E+TKEEC +FGS+K++ IPR       + PG   +F+ + + D A+ A   L  RTFDGRKVE  ++DE KF ++ +
Sbjct:   65 GAQAGAMPGMVPVMMMPNPLMVATAAQDKVNRELFVGNTPPGTSEALLTQFLNGAMRRTKLCAADAMPIIQCRTNQKFAFVECASIADANLALNLNGIPFMGSSLRVSRPSKYAGPHVPSKTWQELTGQTLPVGLTPVPENTSPAEDKVNRELFIGNTTPEMTESMLTDFLGKAMEQVGLATHPGNPITACRVSGKFAFIELRSKEETANALNLNNIPYLGAQ-LRVGRPSKYVGAQTPHGNWEDILAKYMSGE----LKLPS---------QGGAPAAAPAPAANTGVPTRVVELKNMLTMDELTSDQDYEEIMEDTKEECSQFGSLKNLVIPR-------DGPGATKIFLEYMSTDDAAAAIKGLAGRTFDGRKVEAIFYDETKFANKEY 435          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A7S2HGX3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGX3_9STRA)

HSP 1 Score: 294 bits (752), Expect = 1.500e-88
Identity = 168/391 (42.97%), Postives = 231/391 (59.08%), Query Frame = 1
Query:  268 GVGAVPGMLDGMGMGM---------GDKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQESA-------DNVVDPATKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEEKFNSRIF 1392
            G  A+PG++ G    +          DK  RELFVGNTP GTS+ +L+ FLN AM++  +  +   P++ CR N K+AFV+  S +    ALNLNGIPFM   L++ RPSKY  P   + T Q L GQ          +N      KV REL+IGNT+P+MT+ +L DFL   M++VG S + G+PI   RVSG FAF+E RS EE+   LNLNNIP+LG Q L++ RPSKY G +T H NW D+LA++ SG     L  P+         Q  A AA A    ++ +PT  + L NMLT  +L  +  + +I E+TKEEC +FGS+K++ IPR       + PG   +F+ + + D A+KA   L  RTFDGRKVE  ++DE KF ++ +
Sbjct:    4 GTSAIPGVVPGAAAPLMVSPAVAAAQDKVNRELFVGNTPPGTSETLLMAFLNGAMRRTKICAADATPIIQCRTNQKFAFVECASIQEANLALNLNGIPFMGSSLRVSRPSKYAGPHVASKTWQELTGQALPAGLTPVPENTSPAEDKVNRELFIGNTTPEMTEGMLTDFLGKAMEQVGLSNQPGNPITACRVSGKFAFIELRSKEEAANALNLNNIPYLGAQ-LRVGRPSKYTGVQTSHGNWEDILAKYMSGE----LKLPS---------QGGAPAAAATPAEDVGSPTRVVELKNMLTKEELTSDQDYEEIMEDTKEECSQFGSLKNLVIPR-------DGPGATKIFLEYLSTDDAAKAIQGLAGRTFDGRKVEAVFYDETKFANKEY 373          
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Match: A0A7R9WSI1_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSI1_9STRA)

HSP 1 Score: 293 bits (749), Expect = 1.690e-87
Identity = 171/401 (42.64%), Postives = 237/401 (59.10%), Query Frame = 1
Query:  247 LPLGSGPGVGAVPGMLDGMGMGMG----DKTVRELFVGNTPQGTSDFVLLEFLNAAMKQVNLTTSPGNPVVTCRVNNKYAFVKLRSSEGCTNALNLNGIPFMSQMLKIGRPSKYQSPVAPAST*QRLIGQE---------------SADNVVDPATKVYRELYIGNTSPDMTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTALLNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPAPATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSFGDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEEKFNSRIF 1392
            +P+ S PG+G+  G L G+ MG       K  RELFVGNTPQGTS+ +LL+FLN AM++ NL      P++ CRVN K+AF++L ++E    ALNLNGIPF+  +LK+ RPSKY  P  P+ T Q+L GQ                          K+ REL++GNT+P MT+  L DFL + M++VG + K G+PI   RVSG FAF+E RS +E+   LNLNNIP +G   L+I RPSK+ G    H NW D+LA++ SG                    AAA ++V   VV L         +NMLT+ DLEDE+ + +I E+T+ EC +FG++KS+ IP+ +      +PG   +F+ +++ D A+KA  +L  RTFDGRKV   Y+DE KF S+ F
Sbjct:   49 VPVPSFPGLGSASGALSGVIMGAQHAAQQKINRELFVGNTPQGTSEMLLLQFLNGAMRRANLCGPTETPILNCRVNTKFAFIELSAAELANKALNLNGIPFLGAILKVSRPSKYAGPHVPSQTWQQLTGQSVPVINNNDIXXXXXXXXXXXXGDRDKINRELFVGNTTPAMTEAFLTDFLGNAMEQVGLNTKPGNPIAACRVSGKFAFIELRSPQEAANALNLNNIPCMGAY-LRIGRPSKWSGTPDTHGNWEDILAKYMSGELQVG---------------AAASSSVTTRVVEL---------HNMLTSEDLEDENEYNEIMEDTRAECGQFGTLKSIVIPKAN------EPGATKIFLEYESPDDAAKAIQNLAGRTFDGRKVAAAYFDEGKFASKQF 418          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5392.13604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF9_ECTSI6.890e-18592.05U2 small nuclear ribonucleoprotein auxiliary facto... [more]
A0A7S2V6E6_9STRA5.970e-10751.55Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S4D6W7_HETAK3.950e-10246.95Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835ZHK3_9STRA1.800e-10152.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XTW3_HETAK1.110e-9448.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4I336_9STRA1.120e-8941.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448YVH2_9STRA5.880e-8945.56Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4RDP7_9STRA9.500e-8944.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2HGX3_9STRA1.500e-8842.97Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9WSI1_9STRA1.690e-8742.64Hypothetical protein n=2 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5392contigL-elsbetiae_contig5392:4522..12678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.4
Seed ortholog evalue7.1e-125
Seed eggNOG ortholog2880.D7FHF9
KEGG koko:K12818,ko:K12837,ko:K16487
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG0120@1,KOG0120@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03041
Exons10
Model size2454
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5392.13604.1prot_L-elsbetiae_contig5392.13604.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5392 5521..8317 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.4692028-UTR-L-elsbetiae_contig5392:4521..55201622816562.4692028-UTR-L-elsbetiae_contig5392:4521..5520Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 4522..5520 -
1691683649.1809428-UTR-L-elsbetiae_contig5392:4521..55201691683649.1809428-UTR-L-elsbetiae_contig5392:4521..5520Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 4522..5520 -
1622816562.5600955-UTR-L-elsbetiae_contig5392:8317..83481622816562.5600955-UTR-L-elsbetiae_contig5392:8317..8348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 8318..8348 -
1691683649.2663062-UTR-L-elsbetiae_contig5392:8317..83481691683649.2663062-UTR-L-elsbetiae_contig5392:8317..8348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 8318..8348 -
1622816562.5710006-UTR-L-elsbetiae_contig5392:8788..89101622816562.5710006-UTR-L-elsbetiae_contig5392:8788..8910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 8789..8910 -
1691683649.275465-UTR-L-elsbetiae_contig5392:8788..89101691683649.275465-UTR-L-elsbetiae_contig5392:8788..8910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 8789..8910 -
1622816562.5821936-UTR-L-elsbetiae_contig5392:9476..96111622816562.5821936-UTR-L-elsbetiae_contig5392:9476..9611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 9477..9611 -
1691683649.2874737-UTR-L-elsbetiae_contig5392:9476..96111691683649.2874737-UTR-L-elsbetiae_contig5392:9476..9611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 9477..9611 -
1622816562.5999212-UTR-L-elsbetiae_contig5392:11821..120021622816562.5999212-UTR-L-elsbetiae_contig5392:11821..12002Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 11822..12002 -
1691683649.2962945-UTR-L-elsbetiae_contig5392:11821..120021691683649.2962945-UTR-L-elsbetiae_contig5392:11821..12002Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 11822..12002 -
1622816562.6183934-UTR-L-elsbetiae_contig5392:12448..126781622816562.6183934-UTR-L-elsbetiae_contig5392:12448..12678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 12449..12678 -
1691683649.3058155-UTR-L-elsbetiae_contig5392:12448..126781691683649.3058155-UTR-L-elsbetiae_contig5392:12448..12678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 12449..12678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.4856384-CDS-L-elsbetiae_contig5392:5520..56311622816562.4856384-CDS-L-elsbetiae_contig5392:5520..5631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 5521..5631 -
1691683649.1915078-CDS-L-elsbetiae_contig5392:5520..56311691683649.1915078-CDS-L-elsbetiae_contig5392:5520..5631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 5521..5631 -
1622816562.5037963-CDS-L-elsbetiae_contig5392:6153..63241622816562.5037963-CDS-L-elsbetiae_contig5392:6153..6324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 6154..6324 -
1691683649.200842-CDS-L-elsbetiae_contig5392:6153..63241691683649.200842-CDS-L-elsbetiae_contig5392:6153..6324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 6154..6324 -
1622816562.515177-CDS-L-elsbetiae_contig5392:6746..69571622816562.515177-CDS-L-elsbetiae_contig5392:6746..6957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 6747..6957 -
1691683649.209238-CDS-L-elsbetiae_contig5392:6746..69571691683649.209238-CDS-L-elsbetiae_contig5392:6746..6957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 6747..6957 -
1622816562.5261686-CDS-L-elsbetiae_contig5392:7272..73521622816562.5261686-CDS-L-elsbetiae_contig5392:7272..7352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 7273..7352 -
1691683649.2193136-CDS-L-elsbetiae_contig5392:7272..73521691683649.2193136-CDS-L-elsbetiae_contig5392:7272..7352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 7273..7352 -
1622816562.5373175-CDS-L-elsbetiae_contig5392:7874..80091622816562.5373175-CDS-L-elsbetiae_contig5392:7874..8009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 7875..8009 -
1691683649.2306995-CDS-L-elsbetiae_contig5392:7874..80091691683649.2306995-CDS-L-elsbetiae_contig5392:7874..8009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 7875..8009 -
1622816562.5482385-CDS-L-elsbetiae_contig5392:8269..83171622816562.5482385-CDS-L-elsbetiae_contig5392:8269..8317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 8270..8317 -
1691683649.248463-CDS-L-elsbetiae_contig5392:8269..83171691683649.248463-CDS-L-elsbetiae_contig5392:8269..8317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 8270..8317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5392.13604.1

>prot_L-elsbetiae_contig5392.13604.1 ID=prot_L-elsbetiae_contig5392.13604.1|Name=mRNA_L-elsbetiae_contig5392.13604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MTDMVLKDFLSSTMQKVGFSQKEGSPIIHARVSGNFAFVECRSIEESTAL
LNLNNIPFLGQQELKINRPSKYPGPETPHLNWPDVLARFTSGNPTAALPA
PATTFGGIESAQAAAQAAVAALVVNLPNPTTTLRLNNMLTAADLEDESSF
GDIEEETKEECEKFGSVKSVHIPRPSTTSEEEKPGVGFVFVAFDAVDSAS
KAAASLRARTFDGRKVEVTYWDEEKFNSRIFNETGNDEATQAAAAATNGS
A*
back to top

mRNA from alignment at L-elsbetiae_contig5392:4522..12678-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5392.13604.1 ID=mRNA_L-elsbetiae_contig5392.13604.1|Name=mRNA_L-elsbetiae_contig5392.13604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8157bp|location=Sequence derived from alignment at L-elsbetiae_contig5392:4522..12678- (Laminarionema elsbetiae ELsaHSoW15)
AGCGCCTTCCTCAACCACGGCAGCCGCCGCCCCCGCCCAGGCGATGCCCA ACCCCGCGCAGATCGCCCTGGCCGCCGCCCGGAACCTCGGCATGCCCACG GCCCTACCCGGGCAGGCTGCGGCGGGCGGGTTCTCGGGCCTCGGCGGGGG CGCGGGCTTCCAGGCCAACTCGTAGCTGCTGACCCAGATCATGCGCTCCG CTCAGCAGCAGGCCTGACACCCTGGACAATGTAAGCGAGCGGCGCATTTG TTGTTGTTGTTGTGGTTGTCGTGAGAGGGCCAAGAAGCACGGGCTGAGCT GGATGGGCTGTGTGTATGATAGGGGCGTCGCGGGTTGGCGTTTTGCTTTT CGTGTTTGGTGTGTGTTGGAATGGTGTAGTACGTGTCGTAACACCCACGG ATGGCTGTCGCTTTCCCGCCTGATGGTGTAAAGTGAAGGGTGAACCAAGT ACCAGACTGATTGTACATCATACAGAAATAACATAAGCCTATTTTTGGAC GTCACAGCTCAAGAAAAATGGCATACTGCGCATGATATTACCTTCCACAT TTCGGTTCTGTCTATTGTATACACGGTTGGTCTGTACATCCGGTGATGTT TTATAATCTGTGGGAAATTAAACTGTGCCCGTGCCCTCCGCTCCCCCTCC CCTCCTCCGGTGTTTGCGAACACCAGTGATGTGACAGTTTCGCTGCCCCT CGGCTCCGGGCCGGGGGTGGGCGCCGTTCCGGGCATGCTCGATGGTATGG GGATGGGCATGGGCGACAAGACCGTGCGCGAGCTGTTCGTCGGTAACACG CCCCAAGGCACCTCAGACTTCGTTCTGCTCGAGTTCCTCAACGCCGCCAT GAAGCAGGTGGGTTTGTCGGTGGGGGGACGGCCGCTCCTGGGGTATTTGG GGTGTACGTCTGTTTTTTCGTGCTGGCAAGCAAGCGGGAGACAGACGGGA GTTGGGGTTTATCAAGGTTAAGGTTGCTCGTTTATGTTATTCGTATTCAG GGCGTGTGCTTGCGTTTTTCGTATTTAGGCGTCCGTCGGTGGGGCGCGAC ATATATAGAAGTACAGTTAGGTTTAGGCAGTCGGGTCGCACAAGCGACTG TTTTCTGTGGTTTGAGCACCGCTCCAGGAAATGTTCCTTAGCAATAGTGA TGGCGAGACCATCGATGCCGGGTTCGGGTCTGTTCGCTTTTCTGCTTAGG TTTGGAGTGGAGCGCACGCTCATGGTTCTAGTGGTGTATTGTGTTTAGTC TGTAGCGGACGAGCGCTCTTGATGTATTTACTGTGATACATGGATGGGTG GTGGTGGCGACTGGTGGTTTTCGACAGCAGAAGTGCTGCTGCTGGTTGTC CCTTAGATGTGAGGTAGTGAGAGGGGCGGCGGCAACTGCGTCCATTACCC TGCTACATAGCTATCGCTTCGAAACTGCTACTGGAATACTTCTGTAAGGC CTGCCTCGGTGTGCGGGGTGCTCCTGCTGGTGCTGGGAGCACAGCACCCG CCGCCGTGCTTATCTTCTCCCTCTCCGGTGTTAGCGATACTGGTGTTTTA CTTCAATTGTCGCGGAATTTGTGTACACTGGCTGGTATGCCCGTCTTCAT TTCCTTACCTTTCTTCCCCGATATAGCCCTGCGGTGGAAGCGCCGAAGAC TTTTTTTCATTTCTGGTGCTAACTTTTAAGCGTTTTGCCGCCGTCCGGTG TTGTTGCTGTTGCTGTTTGCTTTTGTGTGTTTGGCTATTGTTGCTGCTGC TGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGCTGCTGCTCGTTCCGCCG CCTTGAATAATGTGTTGTGCGCACCTCGTCTTTGCTTCCATTTGATGTGG GGTTTGCACCCGATGGGCTTTGTTTCCCATGTGTTTTTCTTACCTGACCA CCCGTCACTCATTTGGTGGTTTGCAATCGCTCTGTTAATTTGTTTTTTTT GCCATGAGATATCTTTGTTCCCTCGTATTTTGCTCCACGTTTTCTTTCTC TCCGGATTTCACGTAATCGCTTATCCGGAATACTTTGACGCGGTTGGTCG TGCTGGCCGCGAAAACGAAAACGAAAACGGAAATTAAAATGTTCGCTCTG TGTTTCAAATCCAGTAAGAGTCTTGGGGTGATTCGTGTGCGTCGTTGTGT GGGGAATGCAGCTCAGGTCGTGCGGATGCGTGCGGCTTTTGGAGGGCAAA GTGAAAAAGTGTCCCTGCTTTTCTGCCCCAGGAGAGATACAAGAGTTTGT TGGTGTGAGATTGTCCTCTTGCGTAGGGGTTATCATGGGTGTATAAAAGG CAAAGACTGTCCGCATCGGCCATTCTAGCGCGTGCTCTCCTCCTCGCTGG ACTCGCGCGTGCTCTGCTGCGTGTCGCCGCTTGCTTCTTCTGTTGTTCCA TGCCGTGTCCGCACCGGTTTCGTACCGTCATATCTATCCTATTTCGCCCC GTTTAAAGTCGATCAAAACCGTGGAAAAGGGAAGGGCGGTTTCCTCTCTG TCTCCTCTCTGAAAAAGAAATTACGCTGAGCCAGTTGTGCAATAATCCCC GATGTCTTTTGGTGAAAAAGAGGGCCGGGTAAAGGTGAGTGTATGTATAC CCCTGGGGGTTTGGCCTTACGTCGCGATTTGGGTTCGTGGCGAAGAGTGG CGTACATATGTGCCCCTAGATGAACGCTCTCCTGGACGCCCTTTCCTGAT TTTGCCTTTGCTAGACCATTTTCCCGGTGTTTTGCGAGGTATCGGTGTGT GGATGGCGAAAAACAGCTGCGATTTCCGGGAAGGTATATGCACCTAGCGG GCTTGTCTTGTGTTGGGGTGTGGAACGGACGGAGCGTCTTGCGCTGGTTT TGCTTACGTCAGCTGCTCTGCCCCAGACCTATAAATATAGCCAACTCCTC CGCCAACTGCCCTGTGCGCATGAGTGTGGCGATGGCCTCTTGCGCGCTTC TTCATCACGTGTGGCTAACAATGCGTTTCCATTGCGTTTTGTCTCCGGCC CCTTTTTTTTGTTGTCTGCCTGTTTTTGGCTGGGCGTTGTGCCGGTTACA TCGAAATCAACGAGCAGGTGAACCTCACCACCTCTCCCGGTAACCCGGTG GTAACCTGCCGCGTCAACAACAAGTACGCCTTCGTGAAGCTCCGCTCGTC CGAGGGGTGCACCAACGCTCTCAACCTCAACGGCATTCCCTTCATGAGTC AGGTGCGTTTTGGGTCGTTGTGTAATCACTCGTGCGCTAGAAATCTCGTG CACGGCTGCTTTCGGATCACTGTCAGGGCATACCTGTGGAGCGTGAAAGG GATTTTGCCTCCGTCATCAAGAGTCAGTTGATCGTGTGCGGGCGTGTGAG GTTTCTTTCTGGATTTGGGTGATGATGGATCTTGGATCTCAAATCGTCGA CGCGTCTGAAAGTGCTTATCCTTGGCTCGAAACTCGGTAGTGGCATGCGC AGTGTCCCCCGGGGTCTGATGTTCGGACCGAACGTTGTTGTCGTTGTGTT TCTCTCGTTGTCCAGCCGTGACGTATGTTGATGTTCTCGAGGTACTTTTG GTGTGTAGATGCACGGTGGATATGCGGCCACCGGGTCACTTCTTGTGGTG ATTCGTGGGATTATTCAAGGTTGGGGTGGTGCTCGGGGTTTTCGTTACAT CTGCAGGGCACCTCAGACACCGTGAGCTAGCTGTGTTCATTCAGCCTCCA TACCCTAGCCCCAACGTGTAAGCCCCTCATTTCTAATGCGGCGACTTGAT CGGTTCCTGTGGCGGCAGATGCTCAAGATCGGCCGCCCCTCCAAGTACCA GAGCCCGGTGGCGCCTGCGAGCACCTGACAGCGGTTGATTGGCCAGGAGT CGGCCGACAACGTTGTGGACCCGGCCACCAAGGTCTACCGGTAAGCCAGC CATTCAAGCTGTTTCATTTTGAGGCCGCGCTCGTGTGCTTCCTCTCCAAG TCCAACTGCATTATTAACCCAGTTAGACTAGTCTTGTACTTCGTGGGAAC TACGTTAGCTCGCGGCGAAGGTAAGGGACAGCCTAGTCTCCTTGGTATTG AACCTATCATCTTCATGCTGGCCACATGGATGGAAGCGTTTGTTGGTGTT GGTGACTCATACGTCACGTATGCAGGCCGTCTCTATTGACGGCGAAAGTT GGATGCAGCCAGCGTGTTGAAGTATAACCACCGGTAGGCCGAGTTGGGAT GTTTCGAGGCATAGTGCTGTGCGCCTGTACGCATCCTCTCGCAACCCCCC CCCCCGTCATTGATTCAGCCACTTGACAAAATCGCTCTTTTCACTGTTAT TTACCCGTGTTACCCGGAAATGTCCCGCAGCGAGCTGTACATCGGCAACA CGAGCCCCGACATGACGGACATGGTGCTGAAGGACTTCCTCAGCAGCACC ATGCAGAAGGTGCGTGATATTTATTCCAAGGTTCTCAAGCTCGTTGCCGG GAGCGTTGTAGACGGCGTGCCTCTGCGGTGTGGTTGTGTTATAACTGGTC CTTACATTGGTATGTTTTGGTGTTTGGTGAGCGGGTGGAATCTGTCCGTG TTTTGCCGCAGGTGGAGTGCCAACCTCGACAAACATCCCAGTTTTCAGTC CCTCGGCATGTTATTATCTTCACGCGTACATACACGCACCAATCAACCGG CCTCTCTTTTTAAAATCAGGTCGGCTTCTCGCAGAAGGAGGGCAGCCCCA TCATCCACGCCCGGGTGTCCGGAAACTTCGCCTTTGTGGAGTGCCGCTCG ATCGAGGAGTCCACCGCCCTGCTCAACCTCAACAACATCCCGTTCCTGGG CCAGGTGTGTTCCGCGTCTTTCATGATTCAATCCTTTTCGGCTTTGCCCT GGTGTACACTCTCTTCTCGTGTCAAGCTTTCCGTGCCGATATGGTGCTCT TCCACTCTGATGCGGCCAGCCCTGGTTTGGGAGAGGTCACTGTTAATTTG TTTGGTGCGGATGGAGGCAGGTTTTCGGTCCCACTGGGGGTTCGAGCGAG GGGATCTTGCCCTAGGTCTGTGCAAAGCGTGTCTCCTCAACGGGTTTTCC TCTCATGTGCTGCTTGACCTGCCCTAAATATGTTGTCTTTTATGTTCGCA AACATCATGCTGTGTCTGGATTACCACAACGAGCGCTCCTCGCGGCCCTT TGTCTTTCCCCCAGAGAGGGACCTAACGCGCGCAGTGGATATGAGTATGT GTATCGACGAGTAGGGTTAACACCTTTGTCAAGGTGTGATCGGAGAGGAA ACAAGCTCCTCATCCACGTGGTCGCTCGCCCGCTACTTCCTCGCTAATTG CTTCACCGCTTTCTTTATCACGAAAGCAGGAGCTGAAGATCAACCGCCCT TCCAAGTACCCCGGCCCGGAGACGCCTCACCTCAACTGGCCCGACGTGCT CGCCAGGTCAGAGCGCAGTACTTTTTAGACTGCGGCACAAAACTGCATAG GATTGTGGTGGGTCCTCGTGACTCGTGAACAACCCCCGCCCAAGACAGAG AACCGTGCGGAGTTCGAATCGATCACCCTCTACAGCAAAACGGCGTTCAT GGATGTTGTTTGATTGTGACCGAAACCGGATCGCGGCGTGTAGTTGTGTT TTTGGTATCGGGAGGCTTTGAAACGTCGCAACTTCGCCACGTTACGTCCG TCACTGCGTGCGCTTTCTTTAGATACCAACCTCAACCTTCTCAGCGCTTG ACCTTGACTTGATAACCTCAGGTTCACGTCTGGAAACCCCACCGCGGCCC TGCCTGCCCCCGCCACCACCTTCGGCGGCATCGAGTCAGCTCAAGCAGCT GCCCAGGCGGCGGTCGCCGCTCTCGTGGTAAACCTCCCCAACCCGACCAC TACCCTTAGGCTGAACAACATGCTCACCGCGGCCGACCTGGAAGACGAGA GCAGTTTCGGCGACATCGAAGAGGAGACCAAGGTCTGGTGTTGTTTCAGT TGCGGTGTCTCTCGTTATTGTTGTTTTATGCCAGGTTTATCTCTCTTTTG GTGTTGTTTGCAAGTCAGTCTACCCAGTAGTAGGTACGTGCTTGGTAGAA CTTTGATGGGCACGAATCAGGGAACGATAGTTCGTGCCACTTGGTGGGTA TGTCACGTTGGTGTGCGCTTGACTGTCTGCAGCCATTAGTAACCAACGGC GGTATCGGCTCGGCTGCATTGCCATCGAGTCGAGATGTGTTTTCACCGTA GCAACCGGTTTGCCGATGATGCTGGACCGATTTCAACAAACTGCGTGCGG TTTTCCTTGCGGTTTATTGTAATTTTGTGTTCTGAACCGAGTATGCCCCG CTGCTCCACCGCCCCGCTGTCCGACTTGGATGTGTGTGTCCTGTCCGCTT GCAGGAAGAGTGCGAGAAGTTCGGATCCGTCAAGTCTGTCCACATCCCTC GGCCCAGCACGACCAGCGAAGAGGAGAAGCCCGGCGTCGGTTTCGTGTTC GTGGCGTTTGATGCCGTAGACTCGGCATCCAAGGCCGCGGCTAGCCTCAG GGCAAGGACTTTCGATGGGCGCAAGGTGCGTGCGTGACTCATCTTATTCA GTGGGCTTGTTATGGAGGATATTGCGGCATCGTCGCTGTTGTTGTCCTGG TCGATATCGTGGTACCTTGGATATGTTAGTGGTTTGTGCACGTGTGTATG AATCTCATCTCACTCGTCTCCACGGTTCGTTATCGGTATGGACGAAGATT CATCTGTCGGGTTCACGGCGTTGCGGAATGCTGCTGTCACTCAAAATATC AACCGTGGCTGGCGTTCGCTGATTGCTGATAAGAGTACCTGCGTTTGGGC ACCGGACGACGAATTCGGTTGTGCTCCTTTCTCGAAGTGGTGTTTGTGTG GTTGCTGAAGGCATGTTTTCTGATTCTCGAACAATCTATCTGGTCGAGTA TCTTGAATGTCTCGTTTCAAATGTACCCTCTTCGCTTTTTGTGTGTACGC CACTTATGTTCTGTGGGCGTTCTGAGTGTCGCTCCTCCTTTGAACCTCCC CGTTATCGCGTGTTTCGGCTTTTGACCGTGCCACAAATAACAACCAGGTG GAGGTCACCTACTGGGACGAAGAGAAGTTCAACAGCCGAATCTTCAACGA AACTGGAAACGACGAGGCGACGCAGGCTGCTGCTGCTGCGACCAACGGAA GCGCCTAAGAACATTCTCTAGAGGGGAAGCAGTTAGAGCTGCCTTCGGTA TTCCATCTTTGATGTACTGTCGTCGGACTGAAGCACAGCGAGTTGCACCA AAGGGGCATTGATTGGGGAAAAATGAAGCACACCGAAAGTGCACGACGTG AACACGGGGCGTTGTGATGCTCTTCGTTAGCGGTTGACGTAGCTGCGGGC TCGTCACACGGACCCCGTACCTCCCTCTGTTTTATGTAGTGGGTATGTGC TCTAGTACTTGAATCGCAGCTGCTTCACAAGCGTGAGCTTTCTTAGACTG GTGAATCTATTTTATCCATTCTCAATGGGCACGGTCGCCTGTCCTATTGA TGCAAATTTCTCGTTTGTATGATATCGTATTCAATGTACACGCGCTATGT AGACAGGATCCTGAGTACGAAGAGTTGCCTTTCTCCGTTGTGTGAAATTG TGTAACGGGAGTCGGTGCTTTGGGTTGGCATGGATTGTTGCGTTCTGGGT CTCGTTGTGAGCTTGGTGTCGGAAGAAAGTGATCAACAGCAGGCCTCGGT CGAACGATCGAACTCGCCTATACCGATGTTGTTTTGTACTCACGCATAGC AGGCCGCCGGACATGACCTCTTCGTTTTCGAGGCGAACAGCAGCCGCAAC AGTCAGTTGAGGGTCGGGTTGGGTGATACAGCAGTCACAGGGTCGGTGGA TTTTCATCTCCTCCAGCTTGTCTTGTTGTGTGCCGGAACTAAGGGATATG CTTCGCTTCCTTGGTGGACAACAATTTACAGGGGGGGCAAGTCTATGGCG TTTCTCAACCCCAACCGATGTTCTTTAACGTCTGCCCGCAGGAGGACCTG CGCAGTAGTGTTCCCGTCTGGGCTCGCTGCGAGTGGTAGGTCACACAACA CGCTGGCTGAAGAGCTGGTTTGATCGATCCCGAAACAATGGCGTAAGCCG AAGTATTTAGGTGGTTTGATGACTGCAGCACCATTTTCCCAAGCAAACAC GACTCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5392:4522..12678-

>mRNA_L-elsbetiae_contig5392.13604.1 ID=mRNA_L-elsbetiae_contig5392.13604.1|Name=mRNA_L-elsbetiae_contig5392.13604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig5392:4522..12678- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGACATGGTGCTGAAGGACTTCCTCAGCAGCACCATGCAGAAGAT
GACGGACATGGTGCTGAAGGACTTCCTCAGCAGCACCATGCAGAAGGTCG
GCTTCTCGCAGAAGGAGGGCAGCCCCATCATCCACGCCCGGGTGTCCGGA
AACTTCGCCTTTGTGGAGTGCCGCTCGATCGAGGAGTCCACCGCCCTGCT
CAACCTCAACAACATCCCGTTCCTGGGCCAGGTCGGCTTCTCGCAGAAGG
AGGGCAGCCCCATCATCCACGCCCGGGTGTCCGGAAACTTCGCCTTTGTG
GAGTGCCGCTCGATCGAGGAGTCCACCGCCCTGCTCAACCTCAACAACAT
CCCGTTCCTGGGCCAGCAGGAGCTGAAGATCAACCGCCCTTCCAAGTACC
CCGGCCCGGAGACGCCTCACCTCAACTGGCCCGACGTGCTCGCCAGCAGG
AGCTGAAGATCAACCGCCCTTCCAAGTACCCCGGCCCGGAGACGCCTCAC
CTCAACTGGCCCGACGTGCTCGCCAGGTTCACGTCTGGAAACCCCACCGC
GGCCCTGCCTGCCCCCGCCACCACCTTCGGCGGCATCGAGTCAGCTCAAG
CAGCTGCCCAGGCGGCGGTCGCCGCTCTCGTGGTAAACCTCCCCAACCCG
ACCACTACCCTTAGGCTGAACAACATGCTCACCGCGGCCGACCTGGAAGA
CGAGAGCAGTTTCGGCGACATCGAAGAGGAGACCAAGGTTCACGTCTGGA
AACCCCACCGCGGCCCTGCCTGCCCCCGCCACCACCTTCGGCGGCATCGA
GTCAGCTCAAGCAGCTGCCCAGGCGGCGGTCGCCGCTCTCGTGGTAAACC
TCCCCAACCCGACCACTACCCTTAGGCTGAACAACATGCTCACCGCGGCC
GACCTGGAAGACGAGAGCAGTTTCGGCGACATCGAAGAGGAGACCAAGGA
AGAGTGCGAGAAGTTCGGATCCGTCAAGTCTGTCCACATCCCTCGGCCCA
GCACGACCAGCGAAGAGGAGAAGCCCGGCGTCGGTTTCGTGTTCGTGGCG
TTTGATGCCGTAGACTCGGCATCCAAGGCCGCGGCTAGCCTCAGGGCAAG
GACTTTCGATGGGCGCAAGGAAGAGTGCGAGAAGTTCGGATCCGTCAAGT
CTGTCCACATCCCTCGGCCCAGCACGACCAGCGAAGAGGAGAAGCCCGGC
GTCGGTTTCGTGTTCGTGGCGTTTGATGCCGTAGACTCGGCATCCAAGGC
CGCGGCTAGCCTCAGGGCAAGGACTTTCGATGGGCGCAAGGTGGAGGTCA
CCTACTGGGACGAAGAGAAGTTCAACAGCCGAATCTTCAACGAAACTGGA
AACGACGAGGCGACGCAGGCTGCTGCTGCTGCGACCAACGGAAGCGCCTA
AGTGGAGGTCACCTACTGGGACGAAGAGAAGTTCAACAGCCGAATCTTCA
ACGAAACTGGAAACGACGAGGCGACGCAGGCTGCTGCTGCTGCGACCAAC
GGAAGCGCCTAA
back to top