mRNA_L-elsbetiae_contig5392.13603.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5392.13603.1
Unique NamemRNA_L-elsbetiae_contig5392.13603.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5392.13603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5392contigL-elsbetiae_contig5392:1377..3869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1881
Cds size1170
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5392.13603.1prot_L-elsbetiae_contig5392.13603.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5392 1477..3241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.382932-UTR-L-elsbetiae_contig5392:1376..14761622816562.382932-UTR-L-elsbetiae_contig5392:1376..1476Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 1377..1476 +
1691683649.1365542-UTR-L-elsbetiae_contig5392:1376..14761691683649.1365542-UTR-L-elsbetiae_contig5392:1376..1476Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 1377..1476 +
1622816562.419903-UTR-L-elsbetiae_contig5392:3241..35351622816562.419903-UTR-L-elsbetiae_contig5392:3241..3535Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 3242..3535 +
1691683649.1610763-UTR-L-elsbetiae_contig5392:3241..35351691683649.1610763-UTR-L-elsbetiae_contig5392:3241..3535Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 3242..3535 +
1622816562.430816-UTR-L-elsbetiae_contig5392:3552..38691622816562.430816-UTR-L-elsbetiae_contig5392:3552..3869Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 3553..3869 +
1691683649.171964-UTR-L-elsbetiae_contig5392:3552..38691691683649.171964-UTR-L-elsbetiae_contig5392:3552..3869Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5392 3553..3869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.393967-CDS-L-elsbetiae_contig5392:1476..23821622816562.393967-CDS-L-elsbetiae_contig5392:1476..2382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 1477..2382 +
1691683649.145166-CDS-L-elsbetiae_contig5392:1476..23821691683649.145166-CDS-L-elsbetiae_contig5392:1476..2382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 1477..2382 +
1622816562.4054723-CDS-L-elsbetiae_contig5392:2977..32411622816562.4054723-CDS-L-elsbetiae_contig5392:2977..3241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 2978..3241 +
1691683649.1530116-CDS-L-elsbetiae_contig5392:2977..32411691683649.1530116-CDS-L-elsbetiae_contig5392:2977..3241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5392 2978..3241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5392.13603.1

>prot_L-elsbetiae_contig5392.13603.1 ID=prot_L-elsbetiae_contig5392.13603.1|Name=mRNA_L-elsbetiae_contig5392.13603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=390bp
MPRNCIHPGCTKVPSFGKAGGKPEYCRDHAKNGMLNVASKNCTHPRCTKR
PSFGKAGSKPEYCRDHVKNGMVNVASKICTYPGCTKQPSYGKAGSKREYC
RGHAKDGMVDVASKTCTHPGCTKQPSYGKAGSKPEYCHDHAKDGMVNVTK
KICTHPGCTTRAIYGEGGIFCARHAGEGMLVLPPSTGRSSGDGSKGDRTE
SSGLGASGGAGTARGGSSDERRSSQSHSPALVDIPASTSMEIKKRAAGFG
DLRPVRVKRERVGGDRMDEDESRACSEPDGVVKTEGMEVPYKVEPREAAG
RCRGERAERRRGGKGEIPDTTGAKVAPIGTKTAFVDAEFSEIAGVTGGRA
AVSVWCRSGRSWRDGREMATGGCTDQLAVSLLIVSSARC*
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mRNA from alignment at L-elsbetiae_contig5392:1377..3869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5392.13603.1 ID=mRNA_L-elsbetiae_contig5392.13603.1|Name=mRNA_L-elsbetiae_contig5392.13603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2493bp|location=Sequence derived from alignment at L-elsbetiae_contig5392:1377..3869+ (Laminarionema elsbetiae ELsaHSoW15)
CTATAATATATTCCTTTCAGTCATAACCATAGCGCCAGCGCAGTGCACTA
GACTTAGTAGCCGCGTTACCGTTTGGGTTCATCGTTTCCGATACGGGAGG
ATGCCTCGGAATTGTATACATCCTGGCTGCACCAAGGTCCCGTCATTTGG
CAAGGCCGGCGGCAAGCCAGAATACTGCCGCGACCATGCCAAAAACGGGA
TGCTGAACGTCGCCAGCAAGAACTGCACACATCCGAGGTGCACCAAGCGG
CCGTCATTCGGCAAGGCCGGCAGCAAGCCAGAGTACTGCCGTGACCATGT
GAAGAACGGGATGGTGAATGTCGCCAGCAAGATATGCACATACCCAGGAT
GCACCAAGCAGCCGTCGTACGGCAAGGCTGGCAGCAAGCGAGAGTACTGC
CGTGGCCATGCCAAGGATGGGATGGTGGACGTCGCCAGCAAGACATGCAC
ACACCCAGGTTGCACCAAACAACCGTCGTACGGCAAGGCTGGCAGCAAGC
CAGAGTACTGCCATGACCATGCGAAGGACGGGATGGTAAATGTCACCAAA
AAGATTTGCACTCATCCAGGTTGCACAACAAGGGCCATCTACGGCGAGGG
AGGGATATTCTGTGCACGCCACGCAGGGGAAGGCATGTTGGTTCTCCCTC
CTTCCACGGGCAGATCTAGCGGGGACGGCAGCAAGGGTGACAGGACTGAA
AGTAGTGGCTTAGGAGCAAGCGGGGGTGCTGGCACGGCGCGCGGTGGTAG
CTCCGACGAGAGGAGGAGCAGCCAATCCCATTCGCCTGCACTGGTAGATA
TTCCCGCCAGCACGAGCATGGAGATCAAGAAACGAGCTGCTGGTTTTGGG
GACCTACGCCCAGTTCGAGTGAAGAGAGAGCGCGTTGGCGGTGACAGGAT
GGACGAAGACGAATCCAGGGCATGTTCGGAGCCAGATGGTGTAGTGAAGA
CAGAAGGCATGGAGGTGCCCTACAAGGTGGAACCTAGGGAAGCTGCAGGT
AGGTGCGTTTAAGTCTGTCTTCTGCATCGCATGTTTTCCGTAGTGGGTGG
GCACTTGAAGAAGTGAGCATGAGGGTTAGACTTTTTAGATATGGATAAAA
TAATTAGTAATAGCTGAAGGGCGAACAAGGTGTGGCCGTGCTACTAAATA
GCTGGATTTTAAACGTCGGATCTCGACACGTTTCTGTACTTCGAAGGCAC
ACAGAGCATTCCATGTTGGACTGTCAACACAGGAGGAATGGTGTTTGTTC
TATAGCACCAGTGGTTTTGGTTAACAATGCTTGGGCCCCTCTTTCGGCCG
TGTACACCAAACCTTGCCGGTCTGGCGCTTGTTTGAACATGCGTTATCTT
CTGCCGCTAGAGTGAGTTTCGCTCAACCTGGTCCTGCTCGGAAACAACAC
GGCTGCTTGGTAATACATGTAGCATTGATTTCCTGGAGATACAAGCATAG
GCCCGTCATGTCCTTGACGCTCTGTTGCTTGAAGAAGATATAATTCTGCC
TCAACTATTTTACCGCCCGCCCCCACTTGCTCGGCTACCGTCCTGATGTG
CTTCATCTTCGTCGCACCCCCCTTCCGCCATCCCATGTGGAACCAATCTA
GAGAGGAGAAAGAGCAGAAAGACGGCGGGGGGGCAAGGGCGAGATTCCTG
ATACCACAGGAGCAAAAGTTGCACCCATAGGGACGAAGACTGCATTCGTT
GACGCAGAATTTTCTGAGATTGCAGGAGTGACGGGGGGAAGAGCAGCAGT
ATCAGTCTGGTGTAGGTCTGGCAGGTCGTGGCGAGATGGGCGCGAGATGG
CCACAGGCGGCTGCACAGACCAGCTAGCTGTCAGCTTGTTGATAGTGAGC
AGCGCACGATGTTGATGCTGCTTCGTGTGTGCTGTTTGTGTCAGCAACCT
AGTGCCCGTTTGGTAGCCCCCCTGACCGTTGCGCCACGACAGCAGCAGGT
GTTTCATTTTTCCATGGCTATCTTGCTCATTTTTTTACCCTCGGGTTTTT
ATTGTTTAATCTCTCGTGCTTTGTTCCTCTCCGAAGTTAGTTGTTCCCTC
TGGTATTTGGTGTCCCAAGTCCTGTGTGTACAGGGTGTTCCATGTGCCCG
TCCTGCTGCACCTTTAGTTTTTCCTGGCGGCTCCAAGAAGTGCTACATAC
CACACGGGAGCGTAGATGTGTTTGAGAATAATAGCACCTTTCCGTCTTTG
TCGGCATCATGCCATCTCGAATAAGATCACAATGTGCTTTGCGTAGGTTT
TGCTGGCGGGGGCTTATTGTGTAGGTTGATCGTGTCGCACTAGGAGCGAT
TTACTGCTGTCCTCTGGTAGCATTGCTGTCTGTCCATTTTCGTCTGTTTT
GGTTCTAGGTCGTTCGATGCCTTCCTGATCTTTCCAAGCGATATGTCGTT
TTTGGCGTTGTAATGTCTTTGGTCGATAACAACGGCAGGGCTCCTCTATC
GGTGTGTGGGCTCTTCGAAGTACTGAGCAAAAACTGGCACGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5392:1377..3869+

>mRNA_L-elsbetiae_contig5392.13603.1 ID=mRNA_L-elsbetiae_contig5392.13603.1|Name=mRNA_L-elsbetiae_contig5392.13603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2340bp|location=Sequence derived from alignment at L-elsbetiae_contig5392:1377..3869+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCGGAATTGTATACATCCTGGCTGCACCAAGGTCCCGTCATTTGG
CAAGGCCGGCGGCAAGCCAGAATACTGCCGCGACCATGCCAAAAACGGGA
TGCTGAACGTCGCCAGCAAGAACTGCACACATCCGAGGTGCACCAAGCGG
CCGTCATTCGGCAAGGCCGGCAGCAAGCCAGAGTACTGCCGTGACCATGT
GAAGAACGGGATGGTGAATGTCGCCAGCAAGATATGCACATACCCAGGAT
GCACCAAGCAGCCGTCGTACGGCAAGGCTGGCAGCAAGCGAGAGTACTGC
CGTGGCCATGCCAAGGATGGGATGGTGGACGTCGCCAGCAAGACATGCAC
ACACCCAGGTTGCACCAAACAACCGTCGTACGGCAAGGCTGGCAGCAAGC
CAGAGTACTGCCATGACCATGCGAAGGACGGGATGGTAAATGTCACCAAA
AAGATTTGCACTCATCCAGGTTGCACAACAAGGGCCATCTACGGCGAGGG
AGGGATATTCTGTGCACGCCACGCAGGGGAAGGCATGTTGGTTCTCCCTC
CTTCCACGGGCAGATCTAGCGGGGACGGCAGCAAGGGTGACAGGACTGAA
AGTAGTGGCTTAGGAGCAAGCGGGGGTGCTGGCACGGCGCGCGGTGGTAG
CTCCGACGAGAGGAGGAGCAGCCAATCCCATTCGCCTGCACTGGTAGATA
TTCCCGCCAGCACGAGCATGGAGATCAAGAAACGAGCTGCTGGTTTTGGG
GACCTACGCCCAGTTCGAGTGAAGAGAGAGCGCGTTGGCGGTGACAGGAT
GGACGAAGACGAATCCAGGGCATGTTCGGAGCCAGATGGTGTAGTGAAGA
CAGAAGGCATGGAGGTGCCCTACAAGGTGGAACCTAGGGAAGCTGCAGGT
AGGTGCATGCCTCGGAATTGTATACATCCTGGCTGCACCAAGGTCCCGTC
ATTTGGCAAGGCCGGCGGCAAGCCAGAATACTGCCGCGACCATGCCAAAA
ACGGGATGCTGAACGTCGCCAGCAAGAACTGCACACATCCGAGGTGCACC
AAGCGGCCGTCATTCGGCAAGGCCGGCAGCAAGCCAGAGTACTGCCGTGA
CCATGTGAAGAACGGGATGGTGAATGTCGCCAGCAAGATATGCACATACC
CAGGATGCACCAAGCAGCCGTCGTACGGCAAGGCTGGCAGCAAGCGAGAG
TACTGCCGTGGCCATGCCAAGGATGGGATGGTGGACGTCGCCAGCAAGAC
ATGCACACACCCAGGTTGCACCAAACAACCGTCGTACGGCAAGGCTGGCA
GCAAGCCAGAGTACTGCCATGACCATGCGAAGGACGGGATGGTAAATGTC
ACCAAAAAGATTTGCACTCATCCAGGTTGCACAACAAGGGCCATCTACGG
CGAGGGAGGGATATTCTGTGCACGCCACGCAGGGGAAGGCATGTTGGTTC
TCCCTCCTTCCACGGGCAGATCTAGCGGGGACGGCAGCAAGGGTGACAGG
ACTGAAAGTAGTGGCTTAGGAGCAAGCGGGGGTGCTGGCACGGCGCGCGG
TGGTAGCTCCGACGAGAGGAGGAGCAGCCAATCCCATTCGCCTGCACTGG
TAGATATTCCCGCCAGCACGAGCATGGAGATCAAGAAACGAGCTGCTGGT
TTTGGGGACCTACGCCCAGTTCGAGTGAAGAGAGAGCGCGTTGGCGGTGA
CAGGATGGACGAAGACGAATCCAGGGCATGTTCGGAGCCAGATGGTGTAG
TGAAGACAGAAGGCATGGAGGTGCCCTACAAGGTGGAACCTAGGGAAGCT
GCAGGTAGGTGCAGAGGAGAAAGAGCAGAAAGACGGCGGGGGGGCAAGGG
CGAGATTCCTGATACCACAGGAGCAAAAGTTGCACCCATAGGGACGAAGA
CTGCATTCGTTGACGCAGAATTTTCTGAGATTGCAGGAGTGACGGGGGGA
AGAGCAGCAGTATCAGTCTGGTGTAGGTCTGGCAGGTCGTGGCGAGATGG
GCGCGAGATGGCCACAGGCGGCTGCACAGACCAGCTAGCTGTCAGCTTGT
TGATAGTGAGCAGCGCACGATGTTGAAGAGGAGAAAGAGCAGAAAGACGG
CGGGGGGGCAAGGGCGAGATTCCTGATACCACAGGAGCAAAAGTTGCACC
CATAGGGACGAAGACTGCATTCGTTGACGCAGAATTTTCTGAGATTGCAG
GAGTGACGGGGGGAAGAGCAGCAGTATCAGTCTGGTGTAGGTCTGGCAGG
TCGTGGCGAGATGGGCGCGAGATGGCCACAGGCGGCTGCACAGACCAGCT
AGCTGTCAGCTTGTTGATAGTGAGCAGCGCACGATGTTGA
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