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Homology
BLAST of mRNA_L-elsbetiae_contig5390.13601.1 vs. uniprot
Match: A0A6H5KTC0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC0_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.500e-36 Identity = 202/474 (42.62%), Postives = 224/474 (47.26%), Query Frame = 3
Query: 6 GGSNSMDDALGALMQAPSMAPVHPRPGGMAPPMGMVAPPAAY--------------PGAGGFSGTPPQQPGSYSPPGDXXXXXXXXXXXXXXXXXXXXPAAAPGPQPSAKTPPFGSSPXXXXXXXXXXXVTVAAAAATV-----------------GASSPSLALVSPQGE-GLTAPPKAGTAPAAXXXXXXXXXXXXXXXSGGPRSFPGIAVQLA---------------PSSTPXXXXXXXXXGDSVRLVPSEDESLRPEGAAAATAKSSA----ETPLMSTVDLSSRFQAQAAMSSGVA-----EGSFVGG---------------SSRN----GAAGLPXXXXXXXXXXXXXXXXXXXXXXXRPPAAYTQSSGPKPIKPDGFHSSASDKVLQERYGHTKIVKEFGAPPTAAQLGGAGA-------LPMPGXXXXXXXXXXXXXXXXXXXXXHQHQQAGGGQRNFGQPFSS 1181
GG++SMD ALGALMQAP+M P+ PRPG GM PP PG GF G QQPGSYSPPG+ XXXXX A PG P A T GS P XXXXXXXXXX +A +P+G+ T PP A A AA +GGPRSFPG+AVQLA P++ P D P EDESLRP A A + SS +PLMSTVDLSS+FQAQ A+S A EGSFVGG S N GAA P XXXXXXXXXXXXXXX PPA T K IKPDGFHSSASDKVLQ RYGHTKIVKEFGAPPTAAQLGGA +P+PG Q GGGQ ++GQPF +
Sbjct: 197 GGASSMDAALGALMQAPTMVPLAPRPGA-----GMAGPPPMXXXXXXXXXXXXVYPPGPAGFPGA--QQPGSYSPPGEGXXXXXYP--------------APPGASPPAAT---GSLPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGKTEVASPAPKGDLAGTGPPDAAAAAAA---------------TGGPRSFPGVAVQLAAXXXXXXXXXXXXXSPAAAPKAGE------DFSGRPPFEDESLRPGAEAKANSSSSPGDGPSSPLMSTVDLSSKFQAQVAVSGAGAGAAAVEGSFVGGXXXXXXPVXXXXXHGSEPNCATAGAAPPPSVXXXXXXXXXXXXXXX-------PPAEQTGKKF-KLIKPDGFHSSASDKVLQARYGHTKIVKEFGAPPTAAQLGGAKGGYMAGPPMPLPGPPPNINGYAQKPQRQAQYGMMPPQQAVGGGQGHYGQPFGA 617
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 2034 |
| Cds size | 1443 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816562.2304735-UTR-L-elsbetiae_contig5390:4292..4863 | 1622816562.2304735-UTR-L-elsbetiae_contig5390:4292..4863 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5390 4293..4863 - |
| 1691683649.0435855-UTR-L-elsbetiae_contig5390:4292..4863 | 1691683649.0435855-UTR-L-elsbetiae_contig5390:4292..4863 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5390 4293..4863 - |
| 1622816562.2763312-UTR-L-elsbetiae_contig5390:7667..7687 | 1622816562.2763312-UTR-L-elsbetiae_contig5390:7667..7687 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5390 7668..7687 - |
| 1691683649.0838351-UTR-L-elsbetiae_contig5390:7667..7687 | 1691683649.0838351-UTR-L-elsbetiae_contig5390:7667..7687 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5390 7668..7687 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816562.2432044-CDS-L-elsbetiae_contig5390:4863..5353 | 1622816562.2432044-CDS-L-elsbetiae_contig5390:4863..5353 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5390 4864..5353 - |
| 1691683649.055218-CDS-L-elsbetiae_contig5390:4863..5353 | 1691683649.055218-CDS-L-elsbetiae_contig5390:4863..5353 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5390 4864..5353 - |
| 1622816562.2560909-CDS-L-elsbetiae_contig5390:6108..6194 | 1622816562.2560909-CDS-L-elsbetiae_contig5390:6108..6194 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5390 6109..6194 - |
| 1691683649.0662408-CDS-L-elsbetiae_contig5390:6108..6194 | 1691683649.0662408-CDS-L-elsbetiae_contig5390:6108..6194 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5390 6109..6194 - |
| 1622816562.2659485-CDS-L-elsbetiae_contig5390:6800..7667 | 1622816562.2659485-CDS-L-elsbetiae_contig5390:6800..7667 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5390 6801..7667 - |
| 1691683649.0761952-CDS-L-elsbetiae_contig5390:6800..7667 | 1691683649.0761952-CDS-L-elsbetiae_contig5390:6800..7667 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5390 6801..7667 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5390.13601.1 >prot_L-elsbetiae_contig5390.13601.1 ID=prot_L-elsbetiae_contig5390.13601.1|Name=mRNA_L-elsbetiae_contig5390.13601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=481bp
MDDALGALMQAPSMAPVHPRPGGMAPPMGMVAPPAAYPGAGGFSGTPPQQ
PGSYSPPGDGGAAAGAFAAPPPAAAAAAAPAAAPGPQPSAKTPPFGSSPA
PASPPAPFPGVTVAAAAATVGASSPSLALVSPQGEGLTAPPKAGTAPAAA
GAGAGADAAASAAASGGPRSFPGIAVQLAPSSTPAAAAGAAAGGDSVRLV
PSEDESLRPEGAAAATAKSSAETPLMSTVDLSSRFQAQAAMSSGVAEGSF
VGGSSRNGAAGLPPPPAAHPTSAPNSATSGGVPPPSRPPAAYTQSSGPKP
IKPDGFHSSASDKVLQERYGHTKIVKEFGAPPTAAQLGGAGALPMPGAPP
NNGYAQQAQARPQYGAPPHQHQQAGGGQRNFGQPFSSGGGGMGGGGMQQA
FGQQQQQQQQQQQQSYGQAPPGAAFQAPPPPGAPSSGGVALPTPSGYAHQ
PAGVGFAPPRQLPPASTTVVAADSTSSAVL* back to topmRNA from alignment at L-elsbetiae_contig5390:4293..7687- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5390.13601.1 ID=mRNA_L-elsbetiae_contig5390.13601.1|Name=mRNA_L-elsbetiae_contig5390.13601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3395bp|location=Sequence derived from alignment at L-elsbetiae_contig5390:4293..7687- (Laminarionema elsbetiae ELsaHSoW15)
CGGGAGGGGGCTCGAACAGTATGGACGACGCTCTCGGCGCCTTGATGCAG
GCGCCAAGCATGGCTCCCGTGCATCCGCGCCCGGGCGGCATGGCGCCCCC
GATGGGCATGGTGGCGCCCCCCGCCGCTTACCCGGGAGCTGGAGGGTTTT
CTGGCACTCCGCCTCAACAACCCGGGTCGTATTCGCCCCCCGGGGACGGT
GGTGCCGCTGCTGGCGCGTTCGCCGCCCCTCCCCCAGCCGCCGCCGCTGC
TGCTGCTCCTGCGGCTGCACCGGGCCCCCAGCCGTCGGCGAAGACACCGC
CGTTCGGCTCTTCCCCGGCGCCCGCCTCGCCCCCGGCGCCGTTCCCCGGG
GTTACCGTCGCCGCCGCCGCGGCAACGGTGGGTGCCTCTTCGCCCTCGCT
GGCGCTTGTAAGCCCTCAAGGCGAGGGGCTCACTGCCCCGCCGAAAGCGG
GAACTGCGCCAGCTGCTGCTGGCGCCGGCGCCGGCGCCGACGCCGCCGCT
TCCGCCGCCGCCTCGGGTGGCCCGAGATCTTTCCCCGGGATCGCGGTGCA
GCTGGCGCCTTCGTCGACCCCGGCCGCGGCAGCAGGGGCGGCGGCGGGGG
GCGACTCGGTGAGATTGGTGCCCTCGGAGGACGAGAGCCTCAGACCTGAA
GGTGCCGCAGCGGCGACGGCGAAAAGCTCGGCAGAAACCCCGTTGATGTC
GACCGTAGACCTGTCGTCGAGATTTCAGGCCCAGGCAGCGATGTCCAGTG
GAGTGGCAGAGGGATCTTTCGTCGGGGGCTCCAGCAGGAATGGAGCGGCG
GGCCTCCCGCCGCCGCCGGCCGCCCATCCGACTTCGGCACCGAATAGTGC
GACCTCGGGGGGGGTACCCCCGCCCTCCAGACCACCGGTAAGTCGAGACA
GGCGGGGGTCAAGCCAGATTCCTAGCGATTCCTGAGTAGCTTTGAGCAGA
AATCCGCAGGTGGAAATCAATAAAGATATTTGGCAGTGCCGGCACCCAGA
GCCCCCCCCCCCCCCCCTATATTTCCCGGCCCTCCATGTTCACAAGACGC
CTGTGTGATGCGGGTGAGGGTATACAAAGCAGAGGTTCACACCGCCTTGT
AGCAGTATCTACCGGAGCTGCCCAACACAGCAGCCCGAGTGAATGAGGTA
TGTGTATGTGGTGGTTTGCAGGCGTCACAAATGTTTTCCATGTGTCGCGC
CTCTCGGCCACCTGACGTGAGCACGAGAGGTGTTTATACTTTTGAGGCTA
TACAAATTCATGCTTTCTTGGCTTGGCGGGTGTACAAAAGCTTAGACAAT
TTCGCCGCCGCGTGAAGTCTGCATCACAAGCGCTTGGGATTTTCCTCCCG
ACAGCAGGCATCCTTTGCCCCGTTCGAGTCGCTTGGGTGGAGGCAGCAGA
ACGCCATGTGGGGATCGAAACAAAACCGCCTACACCCTCGTTTTTTTGTG
TCCACATTTTTTTGTCCGCCGTTGTTGGTTGCTCTTGGTCCAGGCTGCGT
ACACGCAGAGCTCCGGGCCGAAGCCCATCAAGCCTGACGGTTTCCACTCG
AGCGCGTCGGATAAAGTGCTGCAGGAGAGGTGAGAGGTGTCGCGCGTTGT
GGATGGCAGGTGTGAGACAGCACCGGGAAGTGCACATACAACAGCGGCAT
TAGGATCGTATCTTTGTCGGAGCGTCTGAGCGATGCGTCGGGTTGACAAG
AAGCCCGATCAAGACTCGGATCTTCCAAGACTGAAGTTGCGGATAATCTT
TGCACGCGTGGTTTATTTGTTCGTTTCTTTATTAAGCTAGGCCCTTTTGT
GGCACACCCGTGGTGGTGCCGCACGGCTAAAATAGGAGAAACATAACAGA
CCGAGGGGCACCGCAGGGCCGGGGCACCGCAGGGCCGGGGCACCGCGGGG
GGCAGGTGTATGGGGTAGCCGGCGATGAACGGATGAAGAGTGCACACCCG
GAAGAGGTTTTGGTCTTGGTGTGGCACACGTGTGTGTCGTCTCTTTGTAG
TGTTTGTTGCGGCAGCTTTTTACTTGCCTCGAGGTCGGGGGCAAGTCGCT
GCGGGGGCTTTTGCACCCTTGTCAAAACTAAAAAAAAGAGGCAACGAATC
CTTGGTTTTTGGCTGCAGAACAGCAGTTCTTAAAAAACCTAGAGAAAACA
CACGTTTTTTGGCGTCCAGCTTTGGCTCATGATGGGTGAAATTGGTGAGG
TGTGTATGTAGGATGGGTAGGTCTCTCGTGGAGATGAAGGGGCCCGCACG
TTCGCGTGTTTAGTGGGGCGTTGTACTTGCGCCGTATCAATGTCTCACCC
CCGTCCTCCCGGCGCGCACTAAATGTAAACCCAGGTACGGGCACACAAAG
ATCGTCAAAGAGTTCGGCGCGCCCCCTACGGCTGCTCAGCTTGGTGGCGC
GGGGGCACTGCCGATGCCCGGGGCGCCGCCCAACAACGGCTACGCACAGC
AAGCTCAGGCTCGCCCCCAGTACGGGGCACCGCCGCATCAGCACCAGCAA
GCGGGAGGGGGGCAGAGAAACTTCGGCCAGCCGTTTAGCAGCGGTGGCGG
TGGCATGGGTGGTGGGGGAATGCAGCAAGCCTTCGGGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAATCCTATGGACAGGCGCCGCCGGGTGCC
GCTTTCCAAGCCCCGCCGCCTCCGGGGGCTCCGTCTAGCGGCGGCGTTGC
GCTTCCGACGCCCAGTGGGTACGCGCACCAGCCGGCTGGGGTTGGCTTTG
CGCCGCCGCGGCAACTACCTCCAGCATCGACAACCGTAGTTGCCGCCGAC
TCGACCTCCAGCGCTGTGTTGTGACGTGTTTTTTTAGTTGGGCTCGCGCC
CAGGTTTTGTGCTTCGGAGCATGTACGAGTATCCTCGTTCTTGCGCCATC
GACCTCACGTATTGCCCTTCAGGGTGTTACGACCCGCAACTAAACACCAA
ACTAGTTTTTAATTTCTGACGTGCGTATTGTACACTTGTTTTCTTTTCCT
TTTGAGTGTGCTGCTCGGCGAGGATGGCAATATTTTCGCACGTCCCTGCG
TAGTCAGAGTTGTTTGGTACTGGAAAAGTTGGGGAAAAAACGAAACGGTT
TGTGTTTTCGTCGGCGCCGTTCACATGTATCTACGTATCTACAGATCTAC
GTTTTGTAGTAGTTGGCAAATTTCAAATTTCGAATGCATTTTTTTTCACG
TCGCACGGAGAACCTAACCGAGATCCGAGGCACGATTTAGGTGGATGCTG
CTTGGGTTTTTGTCGCTAGCTCCCGGAAGCGTGCTCATTTTATGTAGTGG
TTGTTCTATGATGACCGGCAGCACGATCTCCGTACCGGCGAGAGGCACAT
GTGACACTCTTTTAGAGAGTGCGAAAAAAAAAGGGTTTCCCAGAT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5390:4293..7687- >mRNA_L-elsbetiae_contig5390.13601.1 ID=mRNA_L-elsbetiae_contig5390.13601.1|Name=mRNA_L-elsbetiae_contig5390.13601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2886bp|location=Sequence derived from alignment at L-elsbetiae_contig5390:4293..7687- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGACGCTCTCGGCGCCTTGATGCAGGCGCCAAGCATGGCTCCCGT
GCATCCGCGCCCGGGCGGCATGGCGCCCCCGATGGGCATGGTGGCGCCCC
CCGCCGCTTACCCGGGAGCTGGAGGGTTTTCTGGCACTCCGCCTCAACAA
CCCGGGTCGTATTCGCCCCCCGGGGACGGTGGTGCCGCTGCTGGCGCGTT
CGCCGCCCCTCCCCCAGCCGCCGCCGCTGCTGCTGCTCCTGCGGCTGCAC
CGGGCCCCCAGCCGTCGGCGAAGACACCGCCGTTCGGCTCTTCCCCGGCG
CCCGCCTCGCCCCCGGCGCCGTTCCCCGGGGTTACCGTCGCCGCCGCCGC
GGCAACGGTGGGTGCCTCTTCGCCCTCGCTGGCGCTTGTAAGCCCTCAAG
GCGAGGGGCTCACTGCCCCGCCGAAAGCGGGAACTGCGCCAGCTGCTGCT
GGCGCCGGCGCCGGCGCCGACGCCGCCGCTTCCGCCGCCGCCTCGGGTGG
CCCGAGATCTTTCCCCGGGATCGCGGTGCAGCTGGCGCCTTCGTCGACCC
CGGCCGCGGCAGCAGGGGCGGCGGCGGGGGGCGACTCGGTGAGATTGGTG
CCCTCGGAGGACGAGAGCCTCAGACCTGAAGGTGCCGCAGCGGCGACGGC
GAAAAGCTCGGCAGAAACCCCGTTGATGTCGACCGTAGACCTGTCGTCGA
GATTTCAGGCCCAGGCAGCGATGTCCAGTGGAGTGGCAGAGGGATCTTTC
GTCGGGGGCTCCAGCAGGAATGGAGCGGCGGGCCTCCCGCCGCCGCCGGC
CGCCCATCCGACTTCGGCACCGAATAGTGCGACCTCGGGGGGGGTACCCC
CGCCCTCCAGACCACCGATGGACGACGCTCTCGGCGCCTTGATGCAGGCG
CCAAGCATGGCTCCCGTGCATCCGCGCCCGGGCGGCATGGCGCCCCCGAT
GGGCATGGTGGCGCCCCCCGCCGCTTACCCGGGAGCTGGAGGGTTTTCTG
GCACTCCGCCTCAACAACCCGGGTCGTATTCGCCCCCCGGGGACGGTGGT
GCCGCTGCTGGCGCGTTCGCCGCCCCTCCCCCAGCCGCCGCCGCTGCTGC
TGCTCCTGCGGCTGCACCGGGCCCCCAGCCGTCGGCGAAGACACCGCCGT
TCGGCTCTTCCCCGGCGCCCGCCTCGCCCCCGGCGCCGTTCCCCGGGGTT
ACCGTCGCCGCCGCCGCGGCAACGGTGGGTGCCTCTTCGCCCTCGCTGGC
GCTTGTAAGCCCTCAAGGCGAGGGGCTCACTGCCCCGCCGAAAGCGGGAA
CTGCGCCAGCTGCTGCTGGCGCCGGCGCCGGCGCCGACGCCGCCGCTTCC
GCCGCCGCCTCGGGTGGCCCGAGATCTTTCCCCGGGATCGCGGTGCAGCT
GGCGCCTTCGTCGACCCCGGCCGCGGCAGCAGGGGCGGCGGCGGGGGGCG
ACTCGGTGAGATTGGTGCCCTCGGAGGACGAGAGCCTCAGACCTGAAGGT
GCCGCAGCGGCGACGGCGAAAAGCTCGGCAGAAACCCCGTTGATGTCGAC
CGTAGACCTGTCGTCGAGATTTCAGGCCCAGGCAGCGATGTCCAGTGGAG
TGGCAGAGGGATCTTTCGTCGGGGGCTCCAGCAGGAATGGAGCGGCGGGC
CTCCCGCCGCCGCCGGCCGCCCATCCGACTTCGGCACCGAATAGTGCGAC
CTCGGGGGGGGTACCCCCGCCCTCCAGACCACCGGCTGCGTACACGCAGA
GCTCCGGGCCGAAGCCCATCAAGCCTGACGGTTTCCACTCGAGCGCGTCG
GATAAAGTGCTGCAGGAGAGGCTGCGTACACGCAGAGCTCCGGGCCGAAG
CCCATCAAGCCTGACGGTTTCCACTCGAGCGCGTCGGATAAAGTGCTGCA
GGAGAGGTACGGGCACACAAAGATCGTCAAAGAGTTCGGCGCGCCCCCTA
CGGCTGCTCAGCTTGGTGGCGCGGGGGCACTGCCGATGCCCGGGGCGCCG
CCCAACAACGGCTACGCACAGCAAGCTCAGGCTCGCCCCCAGTACGGGGC
ACCGCCGCATCAGCACCAGCAAGCGGGAGGGGGGCAGAGAAACTTCGGCC
AGCCGTTTAGCAGCGGTGGCGGTGGCATGGGTGGTGGGGGAATGCAGCAA
GCCTTCGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATCCTA
TGGACAGGCGCCGCCGGGTGCCGCTTTCCAAGCCCCGCCGCCTCCGGGGG
CTCCGTCTAGCGGCGGCGTTGCGCTTCCGACGCCCAGTGGGTACGCGCAC
CAGCCGGCTGGGGTTGGCTTTGCGCCGCCGCGGCAACTACCTCCAGCATC
GACAACCGTAGTTGCCGCCGACTCGACCTCCAGCGCTGTGTTGTGAGTAC
GGGCACACAAAGATCGTCAAAGAGTTCGGCGCGCCCCCTACGGCTGCTCA
GCTTGGTGGCGCGGGGGCACTGCCGATGCCCGGGGCGCCGCCCAACAACG
GCTACGCACAGCAAGCTCAGGCTCGCCCCCAGTACGGGGCACCGCCGCAT
CAGCACCAGCAAGCGGGAGGGGGGCAGAGAAACTTCGGCCAGCCGTTTAG
CAGCGGTGGCGGTGGCATGGGTGGTGGGGGAATGCAGCAAGCCTTCGGGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATCCTATGGACAGGCG
CCGCCGGGTGCCGCTTTCCAAGCCCCGCCGCCTCCGGGGGCTCCGTCTAG
CGGCGGCGTTGCGCTTCCGACGCCCAGTGGGTACGCGCACCAGCCGGCTG
GGGTTGGCTTTGCGCCGCCGCGGCAACTACCTCCAGCATCGACAACCGTA
GTTGCCGCCGACTCGACCTCCAGCGCTGTGTTGTGA back to top
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