mRNA_L-elsbetiae_contig5389.13599.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5389.13599.1
Unique NamemRNA_L-elsbetiae_contig5389.13599.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5389.13599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5389contigL-elsbetiae_contig5389:3200..4218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_001350.1
Exons2
Model size697
Cds size615
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5389.13599.1prot_L-elsbetiae_contig5389.13599.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5389 3200..4136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.0980434-CDS-L-elsbetiae_contig5389:3199..32801622816562.0980434-CDS-L-elsbetiae_contig5389:3199..3280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5389 3200..3280 +
1691683648.9810662-CDS-L-elsbetiae_contig5389:3199..32801691683648.9810662-CDS-L-elsbetiae_contig5389:3199..3280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5389 3200..3280 +
1622816562.1106064-CDS-L-elsbetiae_contig5389:3602..41361622816562.1106064-CDS-L-elsbetiae_contig5389:3602..4136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5389 3603..4136 +
1691683648.9898586-CDS-L-elsbetiae_contig5389:3602..41361691683648.9898586-CDS-L-elsbetiae_contig5389:3602..4136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5389 3603..4136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.1214514-UTR-L-elsbetiae_contig5389:4136..42181622816562.1214514-UTR-L-elsbetiae_contig5389:4136..4218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5389 4137..4218 +
1691683649.0005062-UTR-L-elsbetiae_contig5389:4136..42181691683649.0005062-UTR-L-elsbetiae_contig5389:4136..4218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5389 4137..4218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5389.13599.1

>prot_L-elsbetiae_contig5389.13599.1 ID=prot_L-elsbetiae_contig5389.13599.1|Name=mRNA_L-elsbetiae_contig5389.13599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
RGGSRWGVFASDGAAQGLVTRQGSGHQAEGDANFVTSLEAAAPAKRGKKR
GRHRGNPAEEERGLSAAPKSRRVLGDDREDPSDGAAGAGHAEAREGQRHP
WRQRSNKLARRERCSSSAPPANQDDGPPTRSSRGAPGGFREDRVGPVAED
GGCAAGGGVSRGISSGGSNGSGSFGSRAHGAAGVGATAGTGTSSSSSRWS
KYLR*
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mRNA from alignment at L-elsbetiae_contig5389:3200..4218+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5389.13599.1 ID=mRNA_L-elsbetiae_contig5389.13599.1|Name=mRNA_L-elsbetiae_contig5389.13599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1019bp|location=Sequence derived from alignment at L-elsbetiae_contig5389:3200..4218+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGGCGGGAGCCGGTGGGGAGTTTTTGCCTCCGACGGGGCGGCTCAGGG
CCTTGTGACGCGCCAAGGGTCTGGTCACCAGGTGTGTGTTCCGCTCGGCC
GTGTACAACACGAACGGAGCAGAACGGGACTTTGCTTGTGCGACGCCGTC
TTGGTTTGGCGTGTGTACATATTTATGATGGCCTTGTTTTCCTCTGATAT
GAGTACACCTTGACGCAAAACAAAAAACAAGTTAATAGTCACTTGCGTGA
TTGCGCGCGCCTTGTGGCATTCTTTCAGCCGTGCCGTCGTGTTGCTTCGC
AAGAAGAGCCGGTTCTCGTGCGATATTAAACATGCACTCACCCCGCGCGG
CCACACTCGGCGCACGTTGCGTTGTACGCGCGAAACCTGACTGGCCCAAA
AAGGCGGAAGGAGATGCGAATTTCGTCACCAGCCTCGAAGCCGCCGCGCC
TGCCAAGAGAGGGAAAAAGCGCGGCAGACACCGAGGCAACCCGGCAGAAG
AAGAGAGAGGGTTGTCGGCGGCGCCGAAGTCGCGCCGGGTGCTTGGCGAT
GACCGAGAGGACCCGAGCGACGGTGCCGCTGGCGCGGGGCATGCCGAAGC
TCGCGAAGGACAACGCCACCCGTGGCGCCAGAGGAGCAACAAGTTGGCGA
GACGTGAACGGTGTTCCTCAAGCGCCCCCCCTGCGAATCAAGACGATGGG
CCTCCGACGAGGAGCAGTCGGGGCGCCCCCGGCGGTTTCCGGGAAGACAG
AGTAGGTCCAGTGGCTGAAGACGGTGGATGCGCTGCTGGCGGTGGCGTGT
CGCGAGGCATTTCGTCGGGAGGGTCGAACGGTAGCGGCAGCTTCGGTAGC
AGGGCCCACGGTGCCGCGGGCGTCGGGGCGACGGCAGGAACGGGAACGAG
CTCCTCGTCGTCGAGGTGGAGCAAATATCTCCGATGAGACAACTAGTAGT
GACACCCAGTTGCACGTTACGCGTGCATAGCTAGGATACGCCTTGAGCGA
AGTTCGAGGTGTAGGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5389:3200..4218+

>mRNA_L-elsbetiae_contig5389.13599.1 ID=mRNA_L-elsbetiae_contig5389.13599.1|Name=mRNA_L-elsbetiae_contig5389.13599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig5389:3200..4218+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGGCGGGAGCCGGTGGGGAGTTTTTGCCTCCGACGGGGCGGCTCAGGG
CCTTGTGACGCGCCAAGGGTCTGGTCACCAGCGGGGCGGGAGCCGGTGGG
GAGTTTTTGCCTCCGACGGGGCGGCTCAGGGCCTTGTGACGCGCCAAGGG
TCTGGTCACCAGGCGGAAGGAGATGCGAATTTCGTCACCAGCCTCGAAGC
CGCCGCGCCTGCCAAGAGAGGGAAAAAGCGCGGCAGACACCGAGGCAACC
CGGCAGAAGAAGAGAGAGGGTTGTCGGCGGCGCCGAAGTCGCGCCGGGTG
CTTGGCGATGACCGAGAGGACCCGAGCGACGGTGCCGCTGGCGCGGGGCA
TGCCGAAGCTCGCGAAGGACAACGCCACCCGTGGCGCCAGAGGAGCAACA
AGTTGGCGAGACGTGAACGGTGTTCCTCAAGCGCCCCCCCTGCGAATCAA
GACGATGGGCCTCCGACGAGGAGCAGTCGGGGCGCCCCCGGCGGTTTCCG
GGAAGACAGAGTAGGTCCAGTGGCTGAAGACGGTGGATGCGCTGCTGGCG
GTGGCGTGTCGCGAGGCATTTCGTCGGGAGGGTCGAACGGTAGCGGCAGC
TTCGGTAGCAGGGCCCACGGTGCCGCGGGCGTCGGGGCGACGGCAGGAAC
GGGAACGAGCTCCTCGTCGTCGAGGTGGAGCAAATATCTCCGATGAGCGG
AAGGAGATGCGAATTTCGTCACCAGCCTCGAAGCCGCCGCGCCTGCCAAG
AGAGGGAAAAAGCGCGGCAGACACCGAGGCAACCCGGCAGAAGAAGAGAG
AGGGTTGTCGGCGGCGCCGAAGTCGCGCCGGGTGCTTGGCGATGACCGAG
AGGACCCGAGCGACGGTGCCGCTGGCGCGGGGCATGCCGAAGCTCGCGAA
GGACAACGCCACCCGTGGCGCCAGAGGAGCAACAAGTTGGCGAGACGTGA
ACGGTGTTCCTCAAGCGCCCCCCCTGCGAATCAAGACGATGGGCCTCCGA
CGAGGAGCAGTCGGGGCGCCCCCGGCGGTTTCCGGGAAGACAGAGTAGGT
CCAGTGGCTGAAGACGGTGGATGCGCTGCTGGCGGTGGCGTGTCGCGAGG
CATTTCGTCGGGAGGGTCGAACGGTAGCGGCAGCTTCGGTAGCAGGGCCC
ACGGTGCCGCGGGCGTCGGGGCGACGGCAGGAACGGGAACGAGCTCCTCG
TCGTCGAGGTGGAGCAAATATCTCCGATGA
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