mRNA_L-elsbetiae_contig5389.13598.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5389.13598.1
Unique NamemRNA_L-elsbetiae_contig5389.13598.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: D8LE90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE90_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.380e-27
Identity = 57/82 (69.51%), Postives = 60/82 (73.17%), Query Frame = 3 
Query:    6 FQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAGRGEDPQVVLRRGLGGPGSQPRGRLDSSVGTMDQD 251
            FQVNQ+TKSGKWKCRMCGEGQSIVKVWGRG HAKDVRGLVM LNA AG GED   VLR  +GG G Q + R     G    D
Sbjct:   19 FQVNQRTKSGKWKCRMCGEGQSIVKVWGRGGHAKDVRGLVMALNAAAGGGEDLNNVLRNNVGGFGPQSQSRRHKQDGRNSSD 100
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BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: A0A6H5KK09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK09_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.400e-10
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   66 QSIVKVWGRGDHAKDVRGLVMELNAVAGRGEDPQVVLRRGLGG 194
            QSIVKVWGRG HAKDVRGLVM LNA AG GEDP  V+   +GG
Sbjct:    4 QSIVKVWGRGGHAKDVRGLVMALNAAAGGGEDPNNVVCNNVGG 46
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BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: A0A210R046_MIZYE (UPF0544 protein C5orf45-like n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R046_MIZYE)

HSP 1 Score: 60.5 bits (145), Expect = 1.150e-8
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:    3 VFQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAGRGEDPQVVL 176
             FQV+Q  K+ KW C+MCGE QS++KV+GRG  A D R  V +LN +  RGE  QV L
Sbjct:   15 TFQVHQVKKAKKWSCKMCGEKQSVIKVFGRGAAAADCRHHVQKLNNL--RGEIEQVTL 70
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BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: UPI001BB2BCC7 (MRN complex-interacting protein-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2BCC7)

HSP 1 Score: 56.2 bits (134), Expect = 2.220e-8
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 3 
Query:    3 VFQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAGR 152
            VFQV+Q  K  KW+C+MCGE QS+ KV+G+G   KD R LV  LN  AG+
Sbjct:   15 VFQVHQVKKKPKWQCKMCGEKQSVRKVYGKGA-GKDCRLLVQSLNMTAGQ 63
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BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: A0A5A8DP91_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DP91_CAFRO)

HSP 1 Score: 56.6 bits (135), Expect = 4.820e-8
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:    3 VFQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAGR 152
             FQV QQ KS KWKCRMC  GQS+V+++     A +VR +V  LN + GR
Sbjct:   14 AFQVVQQPKSKKWKCRMCDHGQSVVRLFAGSSKAAEVRPVVQRLNRLRGR 63
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BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: A0A3B3T2R6_9TELE (Uncharacterized protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3T2R6_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 8.110e-8
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:    3 VFQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAG 149
             FQV+Q  KS KW C+MCGE QS++KV+G+G  A D R  V +LNA+ G
Sbjct:   17 TFQVHQVKKSKKWNCKMCGEKQSLLKVYGQGSGA-DCRRHVQKLNALRG 64
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BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: UPI000D72EB99 (uncharacterized protein LOC112561384 isoform X1 n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72EB99)

HSP 1 Score: 57.8 bits (138), Expect = 9.710e-8
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:    3 VFQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAG 149
             +QV+Q+ KS KWKC++CGE QS++KV+GRG   KD R  V +LN + G
Sbjct:   14 TYQVHQEAKSKKWKCKLCGEQQSVIKVFGRGS-GKDCRQHVQKLNMLRG 61
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BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: UPI0015B2AA0F (MRN complex-interacting protein isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B2AA0F)

HSP 1 Score: 56.2 bits (134), Expect = 2.010e-7
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:    3 VFQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAG 149
             FQV+Q  KS KW C+MCGE QS+VKV+GRG  A D R  V +LN++ G
Sbjct:   15 TFQVHQVKKSKKWSCKMCGEKQSLVKVYGRGSGA-DCRRHVQKLNSLRG 62
[Close]
BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: A0A5A8CZH4_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZH4_CAFRO)

HSP 1 Score: 56.6 bits (135), Expect = 2.060e-7
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:    3 VFQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAGR 152
             FQV QQ KS KWKCRMC  GQS+V+++     A +VR +V  LN + GR
Sbjct:   14 AFQVVQQPKSKKWKCRMCDHGQSVVRLFAGSSKAAEVRPVVQRLNRLRGR 63
[Close]
BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Match: A0A7M7HFY9_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HFY9_STRPU)

HSP 1 Score: 56.6 bits (135), Expect = 2.580e-7
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 3 
Query:    3 VFQVNQQTKSGKWKCRMCGEGQSIVKVWGRGDHAKDVRGLVMELNAVAGRGED 161
            VFQV+Q  K  KW+C+MCGE QS+ KV+GRG   K+ R LV  LN  AG+  D
Sbjct:   15 VFQVHQVGKKPKWQCKMCGEKQSVRKVYGRGS-GKECRLLVQSLNMTAGQMAD 66
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5389.13598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE90_ECTSI1.380e-2769.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK09_9PHAE1.400e-1074.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A210R046_MIZYE1.150e-853.45UPF0544 protein C5orf45-like n=2 Tax=Mizuhopecten ... [more]
UPI001BB2BCC72.220e-856.00MRN complex-interacting protein-like n=1 Tax=Lytec... [more]
A0A5A8DP91_CAFRO4.820e-852.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A3B3T2R6_9TELE8.110e-855.10Uncharacterized protein n=1 Tax=Paramormyrops king... [more]
UPI000D72EB999.710e-853.06uncharacterized protein LOC112561384 isoform X1 n=... [more]
UPI0015B2AA0F2.010e-757.14MRN complex-interacting protein isoform X1 n=2 Tax... [more]
A0A5A8CZH4_CAFRO2.060e-752.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7M7HFY9_STRPU2.580e-754.72Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5389contigL-elsbetiae_contig5389:2090..2876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.0457613-CDS-L-elsbetiae_contig5389:2089..21421622816562.0457613-CDS-L-elsbetiae_contig5389:2089..2142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5389 2090..2142 +
1691683648.9640746-CDS-L-elsbetiae_contig5389:2089..21421691683648.9640746-CDS-L-elsbetiae_contig5389:2089..2142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5389 2090..2142 +
1622816562.0582776-CDS-L-elsbetiae_contig5389:2653..28761622816562.0582776-CDS-L-elsbetiae_contig5389:2653..2876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5389 2654..2876 +
1691683648.9728065-CDS-L-elsbetiae_contig5389:2653..28761691683648.9728065-CDS-L-elsbetiae_contig5389:2653..2876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5389 2654..2876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5389.13598.1prot_L-elsbetiae_contig5389.13598.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5389 2090..2876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5389.13598.1

>prot_L-elsbetiae_contig5389.13598.1 ID=prot_L-elsbetiae_contig5389.13598.1|Name=mRNA_L-elsbetiae_contig5389.13598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
RCFRSTNRQSRANGSAECAARVKVSSRCGAGGITPKTCEGWSWSSTPWQV
EEKTPKSYCAAVLEGQDHSHAAALTPASGRWTRMTAATFPPT
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mRNA from alignment at L-elsbetiae_contig5389:2090..2876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5389.13598.1 ID=mRNA_L-elsbetiae_contig5389.13598.1|Name=mRNA_L-elsbetiae_contig5389.13598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=787bp|location=Sequence derived from alignment at L-elsbetiae_contig5389:2090..2876+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGTTTCAGGTCAACCAACAGACAAAGTCGGGCAAATGGAAGTGCAGA
ATGGTGAGTTTTTCGAACTTATCTTGCCGCACTGCCGTAACAGCTGTGTA
TGTAGCTCTACACAGACAGTAGTAGTAGCAGCGGGGGTACAACTTCAGTA
CAACTTCACATAGAGTAGCTGTACAAGCTTCTGCTGTCGACTGAAGCGTG
TGTATTAGTTTGAACTTAGAAAATACGTGGTGCAAGTTTCAACGTTGATC
AGAAGTCTGACTCTCCGAATTGTGTTGCTGTCTTGATGTTTTTCGGCCCT
CTGGTTCTCGACTGGTCTAGCGCCGAGCCAATCCACGTACGTCCTGTTCA
ATCGTTCAGGATATCGAGACCGGCAGTGGTGACCCACGATATAGCTGAAA
GAGTCAGTATTGCGCAGCGTTTCGGCGAACCCTGCGGCTTTTACTACTGT
AGCCTACAAGGCGGCGCGTTTGATGCGTAGTTGTCGCCCCGATTCAAAGC
CAAAACGTTTTTCCCGGATCTGCCTCTCGTGTTGTTGTCCGAACACACTG
ATTTGACGCCGCAGTGCGGCGAGGGTCAAAGTATCGTCAAGGTGTGGGGC
CGGGGGGATCACGCCAAAGACGTGCGAGGGCTGGTCATGGAGCTCAACGC
CGTGGCAGGTCGAGGAGAAGACCCCCAAGTCGTATTGCGCCGCGGTCTTG
GAGGGCCAGGATCACAGCCACGCGGCCGCCTTGACTCCAGCGTCGGGACG
ATGGACCAGGATGACGGCCGCGACTTTCCCTCCAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5389:2090..2876+

>mRNA_L-elsbetiae_contig5389.13598.1 ID=mRNA_L-elsbetiae_contig5389.13598.1|Name=mRNA_L-elsbetiae_contig5389.13598.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig5389:2090..2876+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGTTTCAGGTCAACCAACAGACAAAGTCGGGCAAATGGAAGTGCAGA
ATGAGGTGTTTCAGGTCAACCAACAGACAAAGTCGGGCAAATGGAAGTGC
AGAATGTGCGGCGAGGGTCAAAGTATCGTCAAGGTGTGGGGCCGGGGGGA
TCACGCCAAAGACGTGCGAGGGCTGGTCATGGAGCTCAACGCCGTGGCAG
GTCGAGGAGAAGACCCCCAAGTCGTATTGCGCCGCGGTCTTGGAGGGCCA
GGATCACAGCCACGCGGCCGCCTTGACTCCAGCGTCGGGACGATGGACCA
GGATGACGGCCGCGACTTTCCCTCCAACGTGCGGCGAGGGTCAAAGTATC
GTCAAGGTGTGGGGCCGGGGGGATCACGCCAAAGACGTGCGAGGGCTGGT
CATGGAGCTCAACGCCGTGGCAGGTCGAGGAGAAGACCCCCAAGTCGTAT
TGCGCCGCGGTCTTGGAGGGCCAGGATCACAGCCACGCGGCCGCCTTGAC
TCCAGCGTCGGGACGATGGACCAGGATGACGGCCGCGACTTTCCCTCCAA
CG
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