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Homology
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.720e-43 Identity = 111/132 (84.09%), Postives = 117/132 (88.64%), Query Frame = 3
Query: 618 GAGVEPASGGSPNGVAAXXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAEQADKPVSKKDEFCGGEEKGLSTELVCPMG 1013
GAGV P S +G+ A XXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIA TQQQKIMSEIWKTL +DEREAYR+RARDDQKRYKAEQADKPV KK+EF +EKG STELVCPMG
Sbjct: 208 GAGVGPISAAGSDGILAAXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 339
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI) HSP 1 Score: 159 bits (402), Expect = 9.540e-43 Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 3
Query: 735 QSKPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAEQADKPVSKKDEFCGGEEKGLSTELVCPMG 1013
QSKPQSAWMLFIQERREQVKRDNPDIA TQQQKIMSEIWKTL +DEREAYR+RARDDQKRYKAEQADKPV KK+EF +EKG STELVCPMG
Sbjct: 140 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 232
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A4T0X7K4_9ASCO (HMG box domain-containing protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0X7K4_9ASCO) HSP 1 Score: 53.9 bits (128), Expect = 9.010e-6 Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query: 750 SAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAEQADKPVSKKDEFCGGE 974
SA+M F ++R+QV+ DNP I+ Q K++ E WK++ ERE Y +A +D+KRY+ + + K++EF E
Sbjct: 22 SAYMFFANDKRDQVRADNPGISFGQIGKLLGEKWKSMDASEREKYEKQAEEDKKRYEKAKIEYLQKKEEEFTEAE 96
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A1Y1XKB3_9FUNG (High mobility group box (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XKB3_9FUNG) HSP 1 Score: 52.0 bits (123), Expect = 3.080e-5 Identity = 24/62 (38.71%), Postives = 42/62 (67.74%), Query Frame = 3
Query: 741 KPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAE 926
+P +++M F Q++R +VKRDNPD + + KI+ +WK +E+E Y +A +D++RY+ E
Sbjct: 16 RPITSFMFFSQDKRAEVKRDNPDASFGELGKIIGNLWKNASPEEKEKYEKKASEDKERYRRE 77
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A835ZK76_9STRA (Histone-like transcription factor (CBF/NF-Y) and archaeal histone-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK76_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 5.780e-5 Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 3
Query: 750 SAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRY 917
SAW+LF+ + R++V+ +NPD++ +QQ K++S+IW+ L E Y RAR + KRY
Sbjct: 172 SAWILFVNDYRDRVRSENPDLSCSQQSKVLSQIWQQLDRPTVEGYIERARAESKRY 227
BLAST of mRNA_L-elsbetiae_contig5384.13595.1 vs. uniprot
Match: A0A1Y1VI96_9FUNG (HMG box domain-containing protein (Fragment) n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VI96_9FUNG) HSP 1 Score: 50.8 bits (120), Expect = 9.130e-5 Identity = 24/62 (38.71%), Postives = 41/62 (66.13%), Query Frame = 3
Query: 741 KPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGNDEREAYRSRARDDQKRYKAE 926
+P ++M F Q++R +VKRDNPD + + KI+ +WK +E++ Y +A +D++RYK E
Sbjct: 27 RPMISFMFFSQDKRAEVKRDNPDASFGEIGKIIGNLWKNASPEEKKKYEKKALEDKERYKRE 88
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | DPB3 class protein with histone-like transcription factor (NF-YC subunit) and high mobility group domains |
Ec32 ortholog | Ec-11_002940.1 |
Exons | 5 |
Model size | 1013 |
Cds size | 897 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816561.6494205-UTR-L-elsbetiae_contig5384:8745..8822 | 1622816561.6494205-UTR-L-elsbetiae_contig5384:8745..8822 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5384 8746..8822 + |
1691683648.670014-UTR-L-elsbetiae_contig5384:8745..8822 | 1691683648.670014-UTR-L-elsbetiae_contig5384:8745..8822 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5384 8746..8822 + |
1622816561.662172-UTR-L-elsbetiae_contig5384:9753..9792 | 1622816561.662172-UTR-L-elsbetiae_contig5384:9753..9792 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5384 9754..9792 + |
1691683648.6799338-UTR-L-elsbetiae_contig5384:9753..9792 | 1691683648.6799338-UTR-L-elsbetiae_contig5384:9753..9792 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5384 9754..9792 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816561.6788704-CDS-L-elsbetiae_contig5384:9792..10380 | 1622816561.6788704-CDS-L-elsbetiae_contig5384:9792..10380 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5384 9793..10380 + |
1691683648.6893506-CDS-L-elsbetiae_contig5384:9792..10380 | 1691683648.6893506-CDS-L-elsbetiae_contig5384:9792..10380 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5384 9793..10380 + |
1622816561.6944506-CDS-L-elsbetiae_contig5384:11040..11169 | 1622816561.6944506-CDS-L-elsbetiae_contig5384:11040..11169 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5384 11041..11169 + |
1691683648.703212-CDS-L-elsbetiae_contig5384:11040..11169 | 1691683648.703212-CDS-L-elsbetiae_contig5384:11040..11169 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5384 11041..11169 + |
1622816561.7078183-CDS-L-elsbetiae_contig5384:11586..11691 | 1622816561.7078183-CDS-L-elsbetiae_contig5384:11586..11691 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5384 11587..11691 + |
1691683648.7163289-CDS-L-elsbetiae_contig5384:11586..11691 | 1691683648.7163289-CDS-L-elsbetiae_contig5384:11586..11691 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5384 11587..11691 + |
1622816561.719017-CDS-L-elsbetiae_contig5384:12245..12320 | 1622816561.719017-CDS-L-elsbetiae_contig5384:12245..12320 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5384 12246..12320 + |
1691683648.7332907-CDS-L-elsbetiae_contig5384:12245..12320 | 1691683648.7332907-CDS-L-elsbetiae_contig5384:12245..12320 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5384 12246..12320 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5384.13595.1 >prot_L-elsbetiae_contig5384.13595.1 ID=prot_L-elsbetiae_contig5384.13595.1|Name=mRNA_L-elsbetiae_contig5384.13595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
MSDYNQPGATSSLVAAAAAAAAAAAAPPPEAALPAGVPQAYVASEAGYAN VGGSGFYPNLAPAAVAAVLPVAQTPESMTSPPMAPSAVAPAVHVPVVPSP ALAAQASAIHYPSTPTNVDGGGGVVERVREDFTNGATLAPAAGAASTETA ASARAVEAAGVARVAEAGAGVEPASGGSPNGVAAAATGGGASSKKRPSSS AASAGGQSKPQSAWMLFIQERREQVKRDNPDIAATQQQKIMSEIWKTLGN DEREAYRSRARDDQKRYKAEQADKPVSKKDEFCGGEEKGLSTELVCPMG back to topmRNA from alignment at L-elsbetiae_contig5384:8746..12320+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5384.13595.1 ID=mRNA_L-elsbetiae_contig5384.13595.1|Name=mRNA_L-elsbetiae_contig5384.13595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3575bp|location=Sequence derived from alignment at L-elsbetiae_contig5384:8746..12320+ (Laminarionema elsbetiae ELsaHSoW15) CGGTTTTGTGTTGGGCTCGGCCGGCACAGGCACAGGCAGTTGCTCCGGGG
TGCCGACTATCGCGGAGTTGAGATAAGGTGAGTGATTTTAGGAGAAGAGG
TTGTCAAGCTTGTTGAAATTGCCGGACGTCACATGAATGTCAATTTCTCC
CCCTCTGGAACCCCTCCCGCCGGCTCTTGGCACAGCCCTCTCCACGCCAA
CCTCAGGGAAGGCCGTTGGTTTGGAAGTTGCCGGCCTTGTGTATACGAAT
ATGCTTCAGTGTTCGGTTGTGAAGCAGATTTTTGGTCTTGAGTGCCAGTG
GCTAGCCTCGAAGAGAGGTACAGAGGTTTTTCTTCGGTATTTAGTCACAC
GATCATCCCACTGCTGTTCTACATAGTCTACTCCGATTACAGAGCCTGCT
CACGGGTACTTATGTACATATTTTATCCGAAATACCTCGGATTGGAGGGA
GTACGACACATTTCTTTGTGTCGATTGGTCTACTTCTAAATGTAAATGGT
ACTCTCAGAGTTCTGTTTGTGATGTCCAAGATTGCGCGCGAGGTGATCGG
ATGCGTTTTTCGAACAACCAAATCCCGATGAATCCAAACCCAAGCCTCCG
GCGACTTCCCTGCGATTCCTACGGGTCGCTTGCTTGGCTCGGGTATACGG
TATGCATTCTTCATTGCAATCTTCTCAATCCCTTGGAGTATACGTTCGTT
GTGGAAATATACTTGCCGAGTAAATATGGGGTCCCTCCATGCAGATCGTT
GTTACTCTACGGAAGATACCGCACCGTCGATACCCTGTCCGTGAGAAACG
GGGGCGCGGCCGCGTGCCCCCGAAGCCGGGCTGTTGGATTGAGCGCCCTG
AAGTTTGCACGACGTCGCAGGGCCGTTAAGAGGAGCAATTGGTGAACAGT
CTCGGTGCAAGCTTGATGTTTGCTGCCGTCTTGGGGTGGGACATTCACGC
CCAACAAAGACGATCACCAGGACGTTTCCCCCCGCGCCCTCGCCGTAACC
CGCCGCAGCGCGCGCGCTCAGGGAAACACCGCCAGCGCAGCAGCACGATG
TCAGACTACAACCAGCCGGGTGCTACCTCTTCTTTGGTCGCTGCCGCCGC
CGCTGCCGCCGCCGCTGCCGCAGCCCCGCCGCCAGAGGCCGCTCTCCCCG
CCGGCGTGCCGCAGGCCTACGTGGCGTCGGAAGCGGGGTACGCCAACGTC
GGTGGTTCAGGCTTCTACCCCAACTTAGCACCAGCAGCGGTAGCGGCGGT
ACTACCGGTAGCGCAGACACCAGAATCGATGACGTCCCCTCCGATGGCTC
CTTCGGCGGTGGCACCAGCCGTCCACGTGCCGGTCGTTCCTAGTCCCGCT
TTGGCCGCACAGGCTAGCGCCATCCACTATCCGTCGACCCCTACCAACGT
GGACGGTGGTGGCGGTGTGGTGGAGAGAGTGCGCGAGGATTTTACCAACG
GGGCGACCTTGGCGCCGGCGGCCGGAGCTGCAAGCACCGAGACAGCGGCA
TCCGCAAGAGCAGTGGAAGCGGCCGGAGTGGCGAGAGTGGCGGAGGCTGG
GGCGGGCGTTGAACCGGCTAGTGGGGGTAGCCCGAACGGCGTCGCGGCAG
CGGCGACCGGGGGTGGGGCATCGAGCAAAAAGAGGGTGAGACTTGTCCTT
CTTTGTCCATCCATTCTGAGTCAAACCATATCGAATTGAAACCAACGCAG
GCAGCTTTTGACTTTTTGAACCATGGTTTACAAACATGAATACTGGCGTT
TTTCTGCTTTGTCCACCCGCTTTGACGACAACGTGAGGTTCTCGCTTTTT
TCTGGTGGTCTGCTCCTCGAATCTGCAGAAAAAAAGAACAATTGCGATAC
ATGCGGAACACGCCATGTGATAATGCTACGCAGTGTTACAAAATGTGCTG
GGTAGCGTGTTGACTACTCTGCTGTACCAGTATGATATATGCCGACAGTA
GTCTCTGTTGGGGCTTCATGTGATCGTGACTCTGGTCAACATGCTGCAAT
GTGTTTTTGTCTTGTAAACATGTTGCGATATCCAAACAGCCAGCCGCATC
TTCCGCAGACTGGAACACACACGAACGGACAGCCCCCCCACACATACCCT
GTCTCCCCTTCAACCTTTTTGCACCGCGCCTCTCTCTCGCTCCCTCTTGC
CCAACCGCCGTTGGCTCATCGCGCGGCCGTGCGGCGACACGAATCAACCC
AACCCGCCAAATGAGCAAATGAACGACAGAACAAACGAACGAACGAATTA
AACTGAAACTGATTTATTGAAACGGTTTCGACGAAACGAAAGCAGCCGTC
ATCGTCGGCGGCGTCGGCGGGGGGGCAGTCGAAGCCGCAGTCGGCGTGGA
TGCTCTTCATCCAGGAGCGGCGCGAGCAGGTGAAGCGTGACAACCCGGAC
ATCGCCGCGACGCAGCAGCAGAAGGTGGGGGAGGATGCTCGTGCATGCAT
GCGTGCGTGCGTGTGTGCGTGTGCGTGTAGTAAGAATTCGCCGGTTCCAA
GAGGATGTCCAACCCACCTTGGCCGCCGGTACGATATATCTACGTGCGCG
TGCTTGCCTCGAGCACGTGTTCGCAAAAGCATGCACGTGATCGCAAAAGC
ATGTACATGTCATTTGCGTTTCTCTGGCTGAACCGAACCAAACCACCGTA
TGGTCCTTCACGCATAATTTTTAGATGTAAGCCCTGCTCATGGGTTAGCC
ACACCGACAACCGAAGCACGCGGTCTCAATCACTGTACGGCCCGCTTTCC
CGTCGCTCGAGATCCCGTGCTTGGTGTACGGCCTTCCCTGCCCTGACGTG
TCCCGCCCGCACACCAAAACATGCATTACCGCGAAACGTAGATCATGAGC
GAGATCTGGAAGACCCTGGGCAATGACGAGCGGGAGGCCTACCGCAGCCG
AGCCAGAGATGACCAGAAGCGGTATAAGGCAGAGCAGGCGGACAAGGTTA
GTCTCTACCATACGTTTTATTTTGTCTTACTATTGTTTTCGGTCGGTTTT
TAGCGAAATGGTGACCAGATCATCAATTTCAATGACGCCGGGGGGCACAC
AGGGAAGGGCATGTAAATGTTTTTTTTTTAAGTCCGGAGGTGAAAGGGTG
CTATTACGTGTTTTCGTTGTGTTCTTGCGCGGCCGGTTTCTGTGTTCCCC
TCAACTTTCCTCCTCTGGTTATGATGGGGCCCCGTGTTTGGAGTATTATG
GGGGGGTGCTTCCGCTGCGCCAGGCGTGATTAAAGCGAATGTGGCACAGC
AGTGCAGCAGGCGCGGATGAAAGAGCTGCACAAGTTACTCCGGGTTTGCC
CTTACCCTGCATGTTTTGGCGCAAACACATCAGTGATGCTCCTGGCCCTA
GGTCAGGAACACCGGCCCAAGCTTTTGAGGGGGGTATACCCATCGTCACC
CGTTGTGCCCCTTCTGCCCCTCTCTGCTGCGTGCCCCCGTGTATGCGTCT
TGTTTTGTCCTGTCTTGACTGTCTTCGTGCGTGCACGCGATCCAACGCAG
CCCGTGTCGAAGAAAGACGAGTTCTGCGGCGGCGAAGAGAAAGGCCTGTC
CACCGAGCTCGTCTGTCCTATGGGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5384:8746..12320+ >mRNA_L-elsbetiae_contig5384.13595.1 ID=mRNA_L-elsbetiae_contig5384.13595.1|Name=mRNA_L-elsbetiae_contig5384.13595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1794bp|location=Sequence derived from alignment at L-elsbetiae_contig5384:8746..12320+ (Laminarionema elsbetiae ELsaHSoW15) ATGTCAGACTACAACCAGCCGGGTGCTACCTCTTCTTTGGTCGCTGCCGC CGCCGCTGCCGCCGCCGCTGCCGCAGCCCCGCCGCCAGAGGCCGCTCTCC CCGCCGGCGTGCCGCAGGCCTACGTGGCGTCGGAAGCGGGGTACGCCAAC GTCGGTGGTTCAGGCTTCTACCCCAACTTAGCACCAGCAGCGGTAGCGGC GGTACTACCGGTAGCGCAGACACCAGAATCGATGACGTCCCCTCCGATGG CTCCTTCGGCGGTGGCACCAGCCGTCCACGTGCCGGTCGTTCCTAGTCCC GCTTTGGCCGCACAGGCTAGCGCCATCCACTATCCGTCGACCCCTACCAA CGTGGACGGTGGTGGCGGTGTGGTGGAGAGAGTGCGCGAGGATTTTACCA ACGGGGCGACCTTGGCGCCGGCGGCCGGAGCTGCAAGCACCGAGACAGCG GCATCCGCAAGAGCAGTGGAAGCGGCCGGAGTGGCGAGAGTGGCGGAGGC TGGGGCGGGCGTTGAACCGGCTAGTGGGGGTAGCCCGAACGGCGTCGCGG CAGCGGCGACCGGGGGTGGGGCATCGAGCAAAAAGAGGATGTCAGACTAC AACCAGCCGGGTGCTACCTCTTCTTTGGTCGCTGCCGCCGCCGCTGCCGC CGCCGCTGCCGCAGCCCCGCCGCCAGAGGCCGCTCTCCCCGCCGGCGTGC CGCAGGCCTACGTGGCGTCGGAAGCGGGGTACGCCAACGTCGGTGGTTCA GGCTTCTACCCCAACTTAGCACCAGCAGCGGTAGCGGCGGTACTACCGGT AGCGCAGACACCAGAATCGATGACGTCCCCTCCGATGGCTCCTTCGGCGG TGGCACCAGCCGTCCACGTGCCGGTCGTTCCTAGTCCCGCTTTGGCCGCA CAGGCTAGCGCCATCCACTATCCGTCGACCCCTACCAACGTGGACGGTGG TGGCGGTGTGGTGGAGAGAGTGCGCGAGGATTTTACCAACGGGGCGACCT TGGCGCCGGCGGCCGGAGCTGCAAGCACCGAGACAGCGGCATCCGCAAGA GCAGTGGAAGCGGCCGGAGTGGCGAGAGTGGCGGAGGCTGGGGCGGGCGT TGAACCGGCTAGTGGGGGTAGCCCGAACGGCGTCGCGGCAGCGGCGACCG GGGGTGGGGCATCGAGCAAAAAGAGGCCGTCATCGTCGGCGGCGTCGGCG GGGGGGCAGTCGAAGCCGCAGTCGGCGTGGATGCTCTTCATCCAGGAGCG GCGCGAGCAGGTGAAGCGTGACAACCCGGACATCGCCGCGACGCAGCAGC AGAAGCCGTCATCGTCGGCGGCGTCGGCGGGGGGGCAGTCGAAGCCGCAG TCGGCGTGGATGCTCTTCATCCAGGAGCGGCGCGAGCAGGTGAAGCGTGA CAACCCGGACATCGCCGCGACGCAGCAGCAGAAGATCATGAGCGAGATCT GGAAGACCCTGGGCAATGACGAGCGGGAGGCCTACCGCAGCCGAGCCAGA GATGACCAGAAGCGGTATAAGGCAGAGCAGGCGGACAAGATCATGAGCGA GATCTGGAAGACCCTGGGCAATGACGAGCGGGAGGCCTACCGCAGCCGAG CCAGAGATGACCAGAAGCGGTATAAGGCAGAGCAGGCGGACAAGCCCGTG TCGAAGAAAGACGAGTTCTGCGGCGGCGAAGAGAAAGGCCTGTCCACCGA GCTCGTCTGTCCTATGGGTCCCGTGTCGAAGAAAGACGAGTTCTGCGGCG GCGAAGAGAAAGGCCTGTCCACCGAGCTCGTCTGTCCTATGGGT back to top
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