mRNA_L-elsbetiae_contig5380.13590.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5380.13590.1
Unique NamemRNA_L-elsbetiae_contig5380.13590.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 2.870e-74
Identity = 201/615 (32.68%), Postives = 260/615 (42.28%), Query Frame = 3 
Query:   99 MKAFITALVLIGLL--SSPAMASVHAIKSQTKISLGGIKFKVSRYNDGRTNPSRIYFWQQDLTGSSYRFDLDGQLVYFKAGSEVYFDRMEDGDGSLTFEWEGEKNDSADLEAETTIQKKEG-------VSNCADSMANVAAVCQYGLFTFCDNIDTSSLGPDGVHSVNILCD-------NSKGLCSDLQGESDEVCLREKLEQ---------------------SPRC-DNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDESEDSSDSTSDNFSD-----------DTAAPMCDNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDDDDDLEMLVMDGDSMEEVMNEVTDVSEDEDSMDSEEDEFMDEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEXEMMMDEEDAECNRASLSSADQERLDVYYIDMYIEPLCKDDTATTLPNGCNFMGLGQGCRSCYATCGGALYYIRTNAEEIKEQGGEYAVINFCPDSGLTSLDDCRD 1790
            M++F     L+GLL   S  MA   A + Q +I  GG  FK+S ++DGR  P R+YFW   LTGSSYRF LDG + YFKAG E Y DR +  DGS+ F        S   E    + K E          +C+D  A +  VC+ GL  FC  +D S LG DG  SV ILC        ++  +CSD                                     +P C  +G +GI++SN   CCD  CG CGG GCS+FGE  GL E+ CC + I D G  C + G APCYI     DS D                   + +      G +GI++SN  ACCD  CG CGG GCS+FGEA GL   +CC+ +IV  G  C   G APCYI  DD+       D +S +                 S E   M                                                                                      C+R SL+  DQ++L++Y  DMY+E  C +D+ T LP GCN+MGLGQ CR C+     AL +++          GE AVINFCP S ++ L +CRD
Sbjct:    1 MRSFTIVSALLGLLVPGSATMAKT-AKQQQIQIPEGGHTFKISHFDDGRATPYRVYFWDTFLTGSSYRFTLDGDVRYFKAGREQYKDREDKEDGSIKFT-------STPSEPRKDLNKSEPKPTDFPTYRSCSDCTATLQVVCRSGLPKFCSTVDRSCLGRDGALSVGILCGKYERACASANSVCSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPTCASHGVVGIESSNKKVCCDVRCGTCGGVGCSKFGEEYGLGESYCCTSTITDDGESCADTGMAPCYI-----DSDDDXXXXXXXXXXXXXXXXXGEGSTTCASYGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLGAYECCSNDIVKQGESCAATGMAPCYIDSDDE------WDYESKDXXXXXXXXXXXXXXXXXSGEGTAMCASYGVVGIESSNQKACCDVRCGTCGGVGCSKFGEAYGLDASYCCSNEIVDDGESCSATGMAPCFIESGGAQS-------------CSRDSLNDVDQQQLNLYENDMYLEDDCVNDS-TPLPLGCNYMGLGQECRGCFL----ALAHVK----------GEDAVINFCPQSEVSDLAECRD 568
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 4.170e-59
Identity = 146/383 (38.12%), Postives = 183/383 (47.78%), Query Frame = 3 
Query:   99 MKAFITALVLIGLL--SSPAMASVHAIKSQTKISLGGIKFKVSRYNDGRTNPSRIYFWQQDLTGSSYRFDLDGQLVYFKAGSEVYFDRMEDGDGSLTFEWEGEKNDSADLEAETTIQKKEG------VSNCADSMANVAAVCQYGLFTFCDNIDTSSLGPDGV---HSVNILCDNSKGLCSDLQGESDEVCLREKLEQSPRC-DNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDESEDSSDSTSDNFSD-----------------------DTAAPMCDNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDDDD 1136
            MK+ +    L+GLL   S  MA   A + Q +I  GG  FK+S ++DGR  P R+YFW   LTGSSYRF LDG + YFKAG E Y DR +  DGS+ F        S   E    + K E         +C+D    + AVC  GL  FC  ID S LG DG     S +                            +  C  +G +GI++SN   CCD  CG CGG GCS+FGEA GL E+ CCA+ I D G  C   G APC+I     DS D                               +  A    +G +GI++SN   CCD  CG CGG GCS+FGEA GL E+ CCA+ I D G  C   G APC+I  D++
Sbjct:    1 MKSSMIVSALLGLLVPGSATMAET-AKQQQIEIPEGGYTFKISHFDDGRATPYRVYFWDTFLTGSSYRFTLDGDVRYFKAGREQYKDREDKEDGSIKFT-------STPSEPRKDLNKLEPKPTDFPTYSCSDCTTTLQAVCHSGLPKFCSTIDRSCLGSDGTLSESSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCASHGVVGIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCASTITDDGESCAVTGMAPCFI-----DSDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGTATCASHGVVGIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCASTITDDGESCAVTGMAPCFIDSDNE 370
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: A0A6H5L879_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 7.980e-28
Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 3 
Query:  669 CDNGFIGIQASNGA-CCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDESEDSSDSTSDNFSDDTAAPMCDNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDDDDD 1139
            C NG  GI+++NG  CC   CG CGG+ C++    AGLD+ DCC ++I+  G  C+E   APC I D S+ S+ +T  N           NG  GI ++NG  CC   CG CGG  C++   AAGLD+ DCC ++I   G  C+++G APC + D +D+
Sbjct:   52 CSNGIEGIESTNGGVCCPALCGLCGGAACTKAAVDAGLDDGDCCFSDIIRFGASCSENQMAPCIIDDASKASAGNTCSNA----------NGVEGISSANGDVCCPSECGLCGGRDCTQAALAAGLDDGDCCVSDITKEGVKCSDSGAAPCIVYDSEDE 200
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.710e-26
Identity = 79/183 (43.17%), Postives = 91/183 (49.73%), Query Frame = 3 
Query:  666 RCDNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYI-GDESED---------------------------SSDSTS-DNFSDDTAAPMCDNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYI 1121
            RC NG  GI++SNG ACC   CG CGG GCS  G   G    DCC +EIV+ G  C   G +PCYI GDE  D                           S D  S D  S D     C NG  G++++ G  CC   CGQCGG GC  FGE       DCC TEI+D G PC+E G APCY+
Sbjct:  106 RCSNGVYGIESSNGKACCALTCGSCGGVGCS--GRPGG--SYDCCESEIVEEGEACAATGASPCYIDGDEVLDPVVPSMSPVVPEETDMPSGFGGGSYSYSYDFVSWDGDSMDDQFMWCTNGVPGMESAGGEVCCPADCGQCGGVGCGEFGE-------DCCITEIMDYGQPCSEIGTAPCYL 277
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.140e-26
Identity = 69/176 (39.20%), Postives = 96/176 (54.55%), Query Frame = 3 
Query:  123 VLIGLLSSPAMASVHAIKSQTKISLGGIKFKVSRYNDGRTNPSRIYFWQQDLTGSSYRFDLDGQLVYFKAGSEVYFDRMEDGDGSLTFEW---EGEKNDSADLEAETTIQKKEGVSN-CADSMANVAAVCQYGLFTFCDNIDTSSLGPDGVHSVNILCDNSKGLCSDLQGESDEVC 638
            VL+G LSS A  +  A + + +I  GG  FK+S ++DGRT P R++F  + LTGSSYR   DG + YFKAG+E+YFDRM   D S+TF     E  K+     E           +N C +    + A C  GL  FC  +D S LG DG+ S+  LC N K +C+ ++     +C
Sbjct:   10 VLLGQLSSLATVA-QAAQKKIEIPAGGYTFKLSLFDDGRTTPYRVFFADEYLTGSSYRLSADGHVQYFKAGAELYFDRMVQDDNSITFSKKPSESRKHGKGRPEPHDDYDFSSSEANFCTECTEAITATCYSGLPEFCTMVDRSILGNDGLQSMRALCHNYKEVCTIVEDSCHYLC 184
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 7.340e-25
Identity = 65/174 (37.36%), Postives = 79/174 (45.40%), Query Frame = 3 
Query:  603 CSDLQGESDEVCLREKLEQSPRCDNGFIGIQASNGACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDESEDSSDSTSDNFSDDTAAPMCDNGFIGIQASNGACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIG 1124
            C      +D+    +++E    C NG  GI+ +   CC   C QCGG+GC+  G AAGL    CC   I   G  C +  EAPC IG              S  T    C NG  GI  +   CC   C QCGG+GC+  G AAGL    CC   I   G  C +  EAPC IG
Sbjct:  453 CEACDSTTDDDFTTDEVET---CSNGLEGIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIG--------------SRPTTVETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIG 609
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.950e-23
Identity = 69/172 (40.12%), Postives = 86/172 (50.00%), Query Frame = 3 
Query:  669 CDNGFIGIQASNGACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDESEDSSDSTSDN------------------FSDDTAAPMCDNGFIGIQASNGA-CCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGD 1127
            C NG  GIQ+ N ACC   CG CGGS C  FG   GL  ++CC ++IV+ G PC+ A EAPCYI D +   S                               P C  G  GI++S+GA CC  GC  CGGSGCS  G         CC+++I+  G  C+E GEAPC + D
Sbjct: 1273 CSNGIPGIQSDN-ACCLAECGACGGSDCDEFG--GGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVG-MPDYGPESCCSSDILSTGASCSETGEAPCVLAD 1440
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.680e-8
Identity = 31/72 (43.06%), Postives = 37/72 (51.39%), Query Frame = 3 
Query:  909 DDTAAPMCDNGFIGIQASNGACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIG 1124
            D  +   C NG  GI  +   CC   C QCGGSGC+  G AAGL    CC + +   G  C +  EAPC IG
Sbjct:  520 DSASVTTCSNGVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCIIG 591
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BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.370e-8
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 3 
Query:  930 CDNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYI 1121
            C NG  G++++ G  CC   CG CGG GC   G A     ++CC TEI+D G PC+  G APCY+
Sbjct:  674 CTNGVAGVESTMGEVCCPASCGHCGGVGCDERGAA-----DECCTTEIMDYGQPCSVTGTAPCYL 733
[Close]
BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.980e-7
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 3 
Query:  930 CDNGFIGIQASNG-ACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYI 1121
            C NG  G++++ G  CC   CG CGG GC   G A     ++CC TEI+D G PC+  G APCY+
Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDERGAA-----DECCTTEIMDYGQPCSVTGTAPCYL 1236
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5380.13590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KWI6_9PHAE2.870e-7432.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDU6_ECTSI4.170e-5938.12N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5L879_9PHAE7.980e-2841.51WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHN7_ECTSI2.710e-2643.17von Willebrand A domain containing protein n=2 Tax... [more]
A0A6H5JFX1_9PHAE5.140e-2639.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FQV4_ECTSI7.340e-2537.36Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
D7FJ68_ECTSI3.950e-2340.12WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FUJ9_ECTSI2.680e-843.06Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
A0A6H5JRK3_9PHAE9.370e-846.15VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHN6_ECTSI1.980e-746.15Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5380contigL-elsbetiae_contig5380:2988..7740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1806
Cds size1701
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.122706-UTR-L-elsbetiae_contig5380:2987..29941622816561.122706-UTR-L-elsbetiae_contig5380:2987..2994Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5380 2988..2994 -
1691683648.3207848-UTR-L-elsbetiae_contig5380:2987..29941691683648.3207848-UTR-L-elsbetiae_contig5380:2987..2994Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5380 2988..2994 -
1622816561.2190387-UTR-L-elsbetiae_contig5380:6525..65671622816561.2190387-UTR-L-elsbetiae_contig5380:6525..6567Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5380 6526..6567 -
1691683648.3989525-UTR-L-elsbetiae_contig5380:6525..65671691683648.3989525-UTR-L-elsbetiae_contig5380:6525..6567Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5380 6526..6567 -
1622816561.2316902-UTR-L-elsbetiae_contig5380:7684..77401622816561.2316902-UTR-L-elsbetiae_contig5380:7684..7740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5380 7685..7740 -
1691683648.409801-UTR-L-elsbetiae_contig5380:7684..77401691683648.409801-UTR-L-elsbetiae_contig5380:7684..7740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5380 7685..7740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.1353164-CDS-L-elsbetiae_contig5380:2994..30721622816561.1353164-CDS-L-elsbetiae_contig5380:2994..3072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 2995..3072 -
1691683648.3326817-CDS-L-elsbetiae_contig5380:2994..30721691683648.3326817-CDS-L-elsbetiae_contig5380:2994..3072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 2995..3072 -
1622816561.15098-CDS-L-elsbetiae_contig5380:3799..44541622816561.15098-CDS-L-elsbetiae_contig5380:3799..4454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 3800..4454 -
1691683648.3453612-CDS-L-elsbetiae_contig5380:3799..44541691683648.3453612-CDS-L-elsbetiae_contig5380:3799..4454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 3800..4454 -
1622816561.1683404-CDS-L-elsbetiae_contig5380:4715..48631622816561.1683404-CDS-L-elsbetiae_contig5380:4715..4863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 4716..4863 -
1691683648.3547804-CDS-L-elsbetiae_contig5380:4715..48631691683648.3547804-CDS-L-elsbetiae_contig5380:4715..4863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 4716..4863 -
1622816561.183404-CDS-L-elsbetiae_contig5380:5077..51901622816561.183404-CDS-L-elsbetiae_contig5380:5077..5190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 5078..5190 -
1691683648.365678-CDS-L-elsbetiae_contig5380:5077..51901691683648.365678-CDS-L-elsbetiae_contig5380:5077..5190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 5078..5190 -
1622816561.1947594-CDS-L-elsbetiae_contig5380:5486..56311622816561.1947594-CDS-L-elsbetiae_contig5380:5486..5631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 5487..5631 -
1691683648.3760123-CDS-L-elsbetiae_contig5380:5486..56311691683648.3760123-CDS-L-elsbetiae_contig5380:5486..5631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 5487..5631 -
1622816561.2069926-CDS-L-elsbetiae_contig5380:5963..65251622816561.2069926-CDS-L-elsbetiae_contig5380:5963..6525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 5964..6525 -
1691683648.3891225-CDS-L-elsbetiae_contig5380:5963..65251691683648.3891225-CDS-L-elsbetiae_contig5380:5963..6525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5380 5964..6525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5380.13590.1prot_L-elsbetiae_contig5380.13590.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5380 2995..6525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5380.13590.1

>prot_L-elsbetiae_contig5380.13590.1 ID=prot_L-elsbetiae_contig5380.13590.1|Name=mRNA_L-elsbetiae_contig5380.13590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=567bp
MKAFITALVLIGLLSSPAMASVHAIKSQTKISLGGIKFKVSRYNDGRTNP
SRIYFWQQDLTGSSYRFDLDGQLVYFKAGSEVYFDRMEDGDGSLTFEWEG
EKNDSADLEAETTIQKKEGVSNCADSMANVAAVCQYGLFTFCDNIDTSSL
GPDGVHSVNILCDNSKGLCSDLQGESDEVCLREKLEQSPRCDNGFIGIQA
SNGACCDKGCGQCGGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEA
PCYIGDESEDSSDSTSDNFSDDTAAPMCDNGFIGIQASNGACCDKGCGQC
GGSGCSRFGEAAGLDENDCCATEIVDMGTPCTEAGEAPCYIGDDDDDLEM
LVMDGDSMEEVMNEVTDVSEDEDSMDSEEDEFMDEMVMDEATDVPEGEDS
TDSEGDESMDEMVMDEVTDVSEDEDSTDSEGDDSIDEMMMDEVMGVSEDE
DSTDSEEEDEMMMDEEDAECNRASLSSADQERLDVYYIDMYIEPLCKDDT
ATTLPNGCNFMGLGQGCRSCYATCGGALYYIRTNAEEIKEQGGEYAVINF
CPDSGLTSLDDCRDNF*
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mRNA from alignment at L-elsbetiae_contig5380:2988..7740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5380.13590.1 ID=mRNA_L-elsbetiae_contig5380.13590.1|Name=mRNA_L-elsbetiae_contig5380.13590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4753bp|location=Sequence derived from alignment at L-elsbetiae_contig5380:2988..7740- (Laminarionema elsbetiae ELsaHSoW15)
GAAACACACAGCTTTCGCGCATACAGCTTCAGGGGATATCCAGCTTTTGC
CACCAGGTGAGCTCGGCTTCCATGCACATCGATACATAGCCAAAGACTCT
CCTGGAGCAAGCGCAATAAGGCGCATAGCTTGCTTAAACCTACGCACCAG
GGGTGAAAATATCAAAATCAACCCAACCCAACCCCAAGCAGCGGCTACCA
CCCACCAATTTAATCCCTGGTTGCTTGACAGCGCACACGATATTGAAGCC
CCACAACACCCATCGCCAACCGTGACGTGCGCAACTCTTGGGCGATGCCG
TCTCTCCAGACACAAGAGATTGCAGTGGCAGTAAATATCAAGAATACGGA
AAGCCAGCTGGCATCAAAGCCGGTGTCTGTCGTCGCGTCTTTCGACCGCG
ATTTTATGCCACATGTACCTTCCACTCGAATCGAGCCAGTGTATCACGTT
TCTTCAGTGACGCTCGACCTCTACCCAAGCCCACAACATTGCCCCGACCG
GAGCAAGTACCCTCAAGAAGAGTATCCAAGTACCACGCTGATATTTTTTG
TAGTTAACATTTGGTGAAGTATAGACTATGCCCATCTTTGTAATCAAACC
AACCTCAATCGCCTTTTGAGTAGCATCTGAGCGAGTTCTACATACAATAG
GAGCGTGTGATACAATCTGCACGCGGCAAACACGTGGCACACACAGACGA
TGCGCGAAGTGGCGCCGAATATTGTGGCGGTCTCAGTCCAAATGTTTTGG
GTTAAGCTGAGGTCATAATCAGGAGCATGTGATTTCACAGCGTTTGTTTA
AACATCTCGGTGCGATGCGCTGACCAGCGAAGACGTCTACCTGACTCTGC
GGGCGTGACGTCCCTCGTCGTTGCGACTTTTAGTTTTTACATCGCACACA
TGCCGCCACCACTTGAGAACTTCCACCTTTTGGTCCGAGGCTAGGTTCTT
AGTTTTCTGTGGGACATAAGTCTACATATTTATAATTAAAGTAAAGGCTT
TGCTTGATATCCCGAAGCTCTCAACAAATACTAAGTCCCAGTGGGTACAT
CGATATTGTAACAACACTCTGTGCATGTCTCAGGCTCCGCTTATCATCTC
GCTGGTATTTGACATTCATCTCCGCCGCCTGCACGCATCTTTTTCTTTCT
GGCGTTTCTCGTCGTCGCTGCAGCAGGAAAACATCGCCACACCCGCACAC
ACGACCCTTACCACTATGAAGGCTTTCATAACCGCACTCGTCCTAATTGG
ACTGCTGTCCAGTCCGGCGATGGCCTCTGTCCACGCAATTAAGAGTCAAA
CCAAAATATCGTTGGGAGGAATCAAGTTCAAAGTGAGCAGGTATAATGAT
GGGCGGACTAACCCTTCCAGAATTTACTTTTGGCAACAAGACCTCACGGG
CTCGAGCTACCGATTCGACCTTGACGGACAACTGGTTTACTTCAAGGCCG
GTTCGGAGGTGTACTTCGACCGCATGGAGGACGGCGACGGTTCGCTAACG
TTTGAATGGGAGGGGGAGAAAAATGATTCAGCTGATCTTGAGGCCGAAAC
CACGATTCAAAAGAAGGAAGGAGTTTCCAACTGTGCCGACAGCATGGCAA
ATGTGGCCGCTGTGTGCCAATACGGTCTCTTTACATTCTGCGACAACATC
GATACGTCCTCCCTGGGTCCTGACGGAGTCCACTCGGTGAATATTCTGTG
CGACAACTCTAAAGGCTTGTGCTCCGACTTGCAGGGTGAAAGCGATGAGG
TTTGCCTTCGCGAGAAGCTAGAACAATGTGAGTTGACAAGCAACCTCTTC
CTTTCGAGTAGATCATCCGAAGTTACACCTTTTTGCCGTACCACCCGCGT
CTGTGTCGATCCGTAACGTGGGCACATAGGCAGAGCAGTTGGGTATGTCC
TCGATCACGCACGAACAAACCATGTACATGTTGGTCTGACTTGCTGTTTT
GGTGTTGTGTGATTTATAGCTTCCTGCTGATATCGACAGTGCCCAAGTGC
AACTACCGAACGAATACATCCCGTCGACGCCAGCCAATTCCGCAGTGAAT
GGACCCTTTACTTCTCTATTTGCTTGTGTTTGACGTTCACCTGTCCCCGC
ACGTAACAGCCCCGAGGTGCGACAACGGTTTCATCGGCATCCAGGCTTCC
AATGGCGCGTGCTGCGACAAAGGGTGTGGCCAGTGCGGAGGCTCCGGGTG
CTCCCGCTTTGGGGAAGCAGCCGGCCTTGATGAAAACGATTGCTGTGCTA
CAGAGTGAGTGTGGTTTAGTCTCTTCGTGCCGTCTCTAGCGCGAATCGCA
AGTTGCTCCGAGCGATTGCACCAAGGAAGAAGCCCTTCCACTACGCAATG
CATAACCTTCGAGCGGTAAGAGTAGAGTCGCTTGTCTCTCCCCACTCTAA
ATACTTGGTAAAGTATAAGTAGACGTTGAAGTGTATTCCGGCTGGCATCT
GGTAAAGTTAAGTAGACGTTGAAGTGTATTCCGGCTGGCATCTTTACTGG
TGCTTTCTCCTTGCACGTGTTGTCGCGAAACAACGCGAAACCGCGCTCAG
GATCGTTGACATGGGCACGCCTTGCACCGAGGCTGGGGAGGCCCCCTGCT
ACATCGGTGACGAAAGCGAAGACAGCAGCGATAGCACCAGTGATAATTTT
AGCGACGACACCGGTGAGTACTTGGTGATGCACATATATTGTAGCATCGA
ACTGTGGCTCTTCGTCTGAGGATTTGACTTGCACCGACTAGGAGTAGAAA
TGCGATAACGAGTCCAAGGGACAGAGAATGAATCGATGTCCTCTTCAAAA
ACGCACGCAGTTCATGGACCCTTTATTTACCTACTCCTATTCTCTTGCGT
TTGGCGTTCACCTGTCCACGCACATAGCGGCCCCGATGTGCGACAACGGT
TTCATCGGCATCCAGGCTTCCAACGGCGCGTGCTGCGACAAAGGTTGTGG
CCAGTGCGGAGGCTCTGGGTGCTCCCGCTTTGGGGAAGCAGCCGGCCTTG
ATGAAAACGATTGCTGTGCTACAGAGTGAGTGGGTTTCCAGGCAGTCTCT
TCGTGCCGTCTCTAGCGCAAATGGCGGGTCGCTCCGAGCGATTGCACCAA
GGAAGAAGCCCTTCCACTACGCAATGCATAACCTTCGAGCGGTAAGAGTA
GAGTCGCTTGTCTCTCCCCACTCTAAATACTTGGTACATGTGTAAGTAGA
CGTTGAAGTGTATTCCGGCTGGCATCTTTACTGGTGCTTTCTCCTTGCAC
GTGTGTTGTCGCGAAACAACGCGAAACCGCGCTCAGGATCGTTGACATGG
GCACGCCTTGCACCGAGGCTGGGGAGGCCCCCTGCTACATCGGTGACGAT
GACGATGACTTGGAAATGTTGGTGATGGACGGAGACTCGATGGAAGAGGT
GATGAACGAGGTGACAGACGTCTCAGAGGATGAAGATTCTATGGACTCAG
AGGAAGACGAGTTCATGGACGAAATGGTGATGGACGAGGCGACGGACGTC
CCAGAGGGTGAAGATTCTACGGACTCAGAGGGAGACGAGTCCATGGACGA
AATGGTGATGGACGAGGTGACGGACGTCTCAGAGGATGAAGATTCTACGG
ACTCAGAGGGAGACGATTCCATAGACGAAATGATGATGGACGAGGTGATG
GGCGTCTCAGAGGATGAAGATTCTACGGACTCAGAGGAAGAGGACGAAAT
GATGATGGACGAGGAGGATGCGGAATGCAACAGGGCGTCCCTCTCCTCCG
CAGACCAGGAACGCCTCGACGTGTACTACATCGACATGTACATCGAGCCT
CTCTGCAAGGACGACACCGCCACCACGCTGCCCAACGGCTGTAATTTCAT
GGGCCTGGGCCAGGGGTGCCGGAGCTGCTACGCAACGTGCGGGGGAGCCC
TGTACTACATTAGGACGAACGCGGAGGAAATCAAAGAGCAGGTAGGCCGG
ACGTGTGCTTGTCGGTAACCATATATTATATGATAATGCATCAATTTGGT
GCTGTTTTAGACACTGTTGTTGTTGTGTAAGCTTGAATTATCTATTGATA
TTTTTGATATTTGCAACCCCCTTCTCATAAGATCATATACCTAGATAGTA
ATTGCGGCTTCAACGGTCGCAATAGTCACCACCTGCGAAACGCCCTCGAA
AACGAAGAGGTGGGTTATCGGTTGGATGATCCGTAGAGTTATTTCATTTT
GCTATAATTCATTACTCCCTCATTCGATGTCCTCAGCCGACTGTTGGTTG
TAACGGCTTATAAAATGTATTTCCCTGGCCGGGAGAGCTACCTGTAGCAG
AGGTGCGTAGCACAGACAGGGTGGAGTCGAATTAGGGAGTACTGAGCGTT
TCCTTTTTTTGAACCCAGCCTCCTCGCTTAAAAATTCTTGTCTCTAATAC
TATAATGTGAACCCTCTCTTGTCGACCTTAGTCGTTGACATCATGACACC
ACCTCATCGTGCTCGGTGGGTTTTCTTGCTTGCCAGAAAGATTGACGATC
GATTTCAGGCATCTCGTGTCTGATAAGTATGACGTGCAATATTTCTTGCT
GCACACGGCAAAATTTCACATCGTGCAGGCCAGAGGTGGCCATAACTACA
CCTCGGTATGCGGGCTGAGTCTATATCAAGCACCCTCACACGTTTATCTC
CGCGCGTGTATTTGACAGGGCGGAGAATACGCTGTCATCAACTTCTGCCC
CGACTCCGGATTGACTTCTCTCGACGACTGCCGCGACAATTTTTAAACTC
GCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5380:2988..7740-

>mRNA_L-elsbetiae_contig5380.13590.1 ID=mRNA_L-elsbetiae_contig5380.13590.1|Name=mRNA_L-elsbetiae_contig5380.13590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3402bp|location=Sequence derived from alignment at L-elsbetiae_contig5380:2988..7740- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCTTTCATAACCGCACTCGTCCTAATTGGACTGCTGTCCAGTCC
GGCGATGGCCTCTGTCCACGCAATTAAGAGTCAAACCAAAATATCGTTGG
GAGGAATCAAGTTCAAAGTGAGCAGGTATAATGATGGGCGGACTAACCCT
TCCAGAATTTACTTTTGGCAACAAGACCTCACGGGCTCGAGCTACCGATT
CGACCTTGACGGACAACTGGTTTACTTCAAGGCCGGTTCGGAGGTGTACT
TCGACCGCATGGAGGACGGCGACGGTTCGCTAACGTTTGAATGGGAGGGG
GAGAAAAATGATTCAGCTGATCTTGAGGCCGAAACCACGATTCAAAAGAA
GGAAGGAGTTTCCAACTGTGCCGACAGCATGGCAAATGTGGCCGCTGTGT
GCCAATACGGTCTCTTTACATTCTGCGACAACATCGATACGTCCTCCCTG
GGTCCTGACGGAGTCCACTCGGTGAATATTCTGTGCGACAACTCTAAAGG
CTTGTGCTCCGACTTGCAGGGTGAAAGCGATGAGGTTTGCCTTCGCGAGA
AGCTAGAACAATATGAAGGCTTTCATAACCGCACTCGTCCTAATTGGACT
GCTGTCCAGTCCGGCGATGGCCTCTGTCCACGCAATTAAGAGTCAAACCA
AAATATCGTTGGGAGGAATCAAGTTCAAAGTGAGCAGGTATAATGATGGG
CGGACTAACCCTTCCAGAATTTACTTTTGGCAACAAGACCTCACGGGCTC
GAGCTACCGATTCGACCTTGACGGACAACTGGTTTACTTCAAGGCCGGTT
CGGAGGTGTACTTCGACCGCATGGAGGACGGCGACGGTTCGCTAACGTTT
GAATGGGAGGGGGAGAAAAATGATTCAGCTGATCTTGAGGCCGAAACCAC
GATTCAAAAGAAGGAAGGAGTTTCCAACTGTGCCGACAGCATGGCAAATG
TGGCCGCTGTGTGCCAATACGGTCTCTTTACATTCTGCGACAACATCGAT
ACGTCCTCCCTGGGTCCTGACGGAGTCCACTCGGTGAATATTCTGTGCGA
CAACTCTAAAGGCTTGTGCTCCGACTTGCAGGGTGAAAGCGATGAGGTTT
GCCTTCGCGAGAAGCTAGAACAATCCCCGAGGTGCGACAACGGTTTCATC
GGCATCCAGGCTTCCAATGGCGCGTGCTGCGACAAAGGGTGTGGCCAGTG
CGGAGGCTCCGGGTGCTCCCGCTTTGGGGAAGCAGCCGGCCTTGATGAAA
ACGATTGCTGTGCTACAGACCCCGAGGTGCGACAACGGTTTCATCGGCAT
CCAGGCTTCCAATGGCGCGTGCTGCGACAAAGGGTGTGGCCAGTGCGGAG
GCTCCGGGTGCTCCCGCTTTGGGGAAGCAGCCGGCCTTGATGAAAACGAT
TGCTGTGCTACAGAGATCGTTGACATGGGCACGCCTTGCACCGAGGCTGG
GGAGGCCCCCTGCTACATCGGTGACGAAAGCGAAGACAGCAGCGATAGCA
CCAGTGATAATTTTAGCGACGACACCGGATCGTTGACATGGGCACGCCTT
GCACCGAGGCTGGGGAGGCCCCCTGCTACATCGGTGACGAAAGCGAAGAC
AGCAGCGATAGCACCAGTGATAATTTTAGCGACGACACCGCGGCCCCGAT
GTGCGACAACGGTTTCATCGGCATCCAGGCTTCCAACGGCGCGTGCTGCG
ACAAAGGTTGTGGCCAGTGCGGAGGCTCTGGGTGCTCCCGCTTTGGGGAA
GCAGCCGGCCTTGATGAAAACGATTGCTGTGCTACAGACGGCCCCGATGT
GCGACAACGGTTTCATCGGCATCCAGGCTTCCAACGGCGCGTGCTGCGAC
AAAGGTTGTGGCCAGTGCGGAGGCTCTGGGTGCTCCCGCTTTGGGGAAGC
AGCCGGCCTTGATGAAAACGATTGCTGTGCTACAGAGATCGTTGACATGG
GCACGCCTTGCACCGAGGCTGGGGAGGCCCCCTGCTACATCGGTGACGAT
GACGATGACTTGGAAATGTTGGTGATGGACGGAGACTCGATGGAAGAGGT
GATGAACGAGGTGACAGACGTCTCAGAGGATGAAGATTCTATGGACTCAG
AGGAAGACGAGTTCATGGACGAAATGGTGATGGACGAGGCGACGGACGTC
CCAGAGGGTGAAGATTCTACGGACTCAGAGGGAGACGAGTCCATGGACGA
AATGGTGATGGACGAGGTGACGGACGTCTCAGAGGATGAAGATTCTACGG
ACTCAGAGGGAGACGATTCCATAGACGAAATGATGATGGACGAGGTGATG
GGCGTCTCAGAGGATGAAGATTCTACGGACTCAGAGGAAGAGGACGAAAT
GATGATGGACGAGGAGGATGCGGAATGCAACAGGGCGTCCCTCTCCTCCG
CAGACCAGGAACGCCTCGACGTGTACTACATCGACATGTACATCGAGCCT
CTCTGCAAGGACGACACCGCCACCACGCTGCCCAACGGCTGTAATTTCAT
GGGCCTGGGCCAGGGGTGCCGGAGCTGCTACGCAACGTGCGGGGGAGCCC
TGTACTACATTAGGACGAACGCGGAGGAAATCAAAGAGCAGGATCGTTGA
CATGGGCACGCCTTGCACCGAGGCTGGGGAGGCCCCCTGCTACATCGGTG
ACGATGACGATGACTTGGAAATGTTGGTGATGGACGGAGACTCGATGGAA
GAGGTGATGAACGAGGTGACAGACGTCTCAGAGGATGAAGATTCTATGGA
CTCAGAGGAAGACGAGTTCATGGACGAAATGGTGATGGACGAGGCGACGG
ACGTCCCAGAGGGTGAAGATTCTACGGACTCAGAGGGAGACGAGTCCATG
GACGAAATGGTGATGGACGAGGTGACGGACGTCTCAGAGGATGAAGATTC
TACGGACTCAGAGGGAGACGATTCCATAGACGAAATGATGATGGACGAGG
TGATGGGCGTCTCAGAGGATGAAGATTCTACGGACTCAGAGGAAGAGGAC
GAAATGATGATGGACGAGGAGGATGCGGAATGCAACAGGGCGTCCCTCTC
CTCCGCAGACCAGGAACGCCTCGACGTGTACTACATCGACATGTACATCG
AGCCTCTCTGCAAGGACGACACCGCCACCACGCTGCCCAACGGCTGTAAT
TTCATGGGCCTGGGCCAGGGGTGCCGGAGCTGCTACGCAACGTGCGGGGG
AGCCCTGTACTACATTAGGACGAACGCGGAGGAAATCAAAGAGCAGGGCG
GAGAATACGCTGTCATCAACTTCTGCCCCGACTCCGGATTGACTTCTCTC
GACGACTGCCGCGACAATTTTTAAGGCGGAGAATACGCTGTCATCAACTT
CTGCCCCGACTCCGGATTGACTTCTCTCGACGACTGCCGCGACAATTTTT
AA
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