prot_L-elsbetiae_contig5378.13582.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5378.13582.1
Unique Nameprot_L-elsbetiae_contig5378.13582.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length258
Homology
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 348 bits (893), Expect = 1.120e-112
Identity = 178/241 (73.86%), Postives = 200/241 (82.99%), Query Frame = 0
Query:   16 YVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQ----------------HNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 239
            YVDDCTLAG+TPSV QDLKEQLS KF+MTDGGPA LLLGMEISQ DGEI VSQ                H YV+N+LDK+ M DC   ATPG+G EIE+EP+NAI LN+ D K YQGIVGSLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L  YCDA+FAG+SE LQKRSS+GYIFIL G V+SA+STLQK+TAQS+VHAE+IAMA AAREA+
Sbjct:   88 YVDDCTLAGRTPSVGQDLKEQLSDKFKMTDGGPAELLLGMEISQRDGEITVSQXXXXXXXXXXXXXXXXHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAICLNEEDMKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMAAAAREAI 328          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 1.730e-107
Identity = 187/340 (55.00%), Postives = 212/340 (62.35%), Query Frame = 0
Query:    1 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDK---------------------------FNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQK-------------------------------------------------------------------------RSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 239
            +YVYG G  YA LCVYVDDCTLAG+TPSVVQDLK+QLS KF+MTDGGPA LLLGMEISQ D EI VSQH YV+N+LDK                           + M DC   ATPG+G EIE+EP+NAIYL++ D K YQGIV SLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L  YCDA+FAG+SE LQK                                                                         RSS+GYIFIL G V+SA+STLQK+TAQS+VHAE+IAMATAAREA+
Sbjct:   89 VYVYGTGPIYAKLCVYVDDCTLAGRTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQRDEEITVSQHKYVMNILDKAEXXXXXXXXXXXXXXXXXXXXXXXXXYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVLSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKCSSTGYTFILAGGVISAASTLQKXNQHMVGAKRVLRYLQGCPDMRLKFRRGQWGDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAI 428          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 5.770e-101
Identity = 155/195 (79.49%), Postives = 174/195 (89.23%), Query Frame = 0
Query:    1 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQK 195
            +YVYG G TYA+LCVYVDDCTLAGKTPSVVQDLK+QLS KF+MTDGGPA LLLGMEISQ+DGEI VSQH YV+N+LDK+ M DC   ATPG+G EIE+EP+NAIYL++ D K YQGIVGSLLFLTNTTRWEIGY+VM+LCRGMNKPTNQH+ GAKRVLRYLRG PDMP+KFRRGQW L  YCDA+FAG+SE LQK
Sbjct: 1072 VYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQK 1266          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 5.290e-91
Identity = 132/173 (76.30%), Postives = 151/173 (87.28%), Query Frame = 0
Query:    1 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRR 173
            +YVYG G TYA+LCVYVD+CTLAG+TPSVVQD K+QLS KF MTDGGPA LLLGMEI Q DG+I VSQH YV N+L+K+ M DC   ATPG+G EIE+EP+NAIYL+D D K YQGIVGSLLFLT+TTRWEIGY+VM+LCRGMNKPT+QH+ GAKRVLRYLRG PDMP+KFRR
Sbjct:   88 VYVYGAGPTYAILCVYVDNCTLAGRTPSVVQDWKKQLSDKFNMTDGGPAELLLGMEIYQRDGDITVSQHKYVTNILNKYQMVDCKPAATPGSGPEIEQEPENAIYLSDEDKKPYQGIVGSLLFLTHTTRWEIGYAVMVLCRGMNKPTDQHMVGAKRVLRYLRGCPDMPLKFRR 260          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.890e-53
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 0
Query:   33 LKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTN 148
            LK+QLS KF+MTDGGPA LLLGMEISQ DGEI VSQH YV+N+LDK+ M DC   ATPG+G EIE+EP+NAIYL+  D K YQGIVGSLLFLTNTTRWEIGY+VMILCRGMNKPTN
Sbjct:  513 LKKQLSDKFKMTDGGPAELLLGMEISQRDGEITVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSKEDKKLYQGIVGSLLFLTNTTRWEIGYAVMILCRGMNKPTN 628          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.230e-42
Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 0
Query:    3 VYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNA 103
            VYG G TYA+LCVYVD+CTLAG TPSVVQD+K+QLS KF+MTDGGPA LLLGMEI+Q+DGEI VSQH +V+N+LDK+ M +C  VATPG G EIE  P NA
Sbjct:   77 VYGAGPTYAILCVYVDNCTLAGTTPSVVQDMKKQLSNKFKMTDGGPAELLLGMEIAQSDGEITVSQHKHVMNILDKYQMTNCKPVATPGCGPEIE--PGNA 175          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 9.710e-42
Identity = 89/242 (36.78%), Postives = 142/242 (58.68%), Query Frame = 0
Query:    1 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQT--DGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 239
            +Y++  G    +L +YVDD  + G    +V   K++L   F MTD G    ++G+E+ +    G + +SQ  Y  ++L ++ M+    V+TPG GAE+  E      L   D + +Q I GSLL+L   TR+++ Y+V  L R    P   H+A AK +LRYLRG PD+PI +++GQ++L  + D++F    +    RS++GY+F L G +IS  +  Q + AQ+TV AEL A++ +AREA+
Sbjct: 1180 VYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPD--NGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAV 1419          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.500e-41
Identity = 91/242 (37.60%), Postives = 141/242 (58.26%), Query Frame = 0
Query:    1 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEI--SQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTGV-ISASSTLQKVTAQSTVHAELIAMATAAREAL 239
            +Y+Y H      L +YVDD  LAG     +  +K +L ++F+MTD G A+L+LGMEI   +    + +SQ  Y  ++L++F M      +TPG G+EI         L++ +T+ YQGIVGSL+++    R++I Y+   L R M KP+  H+  AK  LRYL G  D  I +++G +KL  + D+N+A   +    +S+S Y+ +L    +S  S LQ +TA ST+ AEL+A A A +EA+
Sbjct:  103 VYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPD--NGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAV 342          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.950e-39
Identity = 85/242 (35.12%), Postives = 137/242 (56.61%), Query Frame = 0
Query:    1 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEISQTD--GEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTG-VISASSTLQKVTAQSTVHAELIAMATAAREAL 239
            +Y++       +L +YVDD  + G    +V   K++L   F MTD G    ++G+ + +    G + +SQ  Y  ++  ++ M+    V+TPG GAE+  E      L   D + +Q I GSLL+L   TR++  Y+V  L R    P   H+A AK +LRYLRG PD+PI +++GQ++L  + D++F    +    RS +GY+F L G +IS  +  Q + AQ+T+ AEL A++ +AREA+
Sbjct:   90 VYIFVRRDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPD--NGRSITGYLFFLGGGLISYGAKAQTLAAQNTLEAELQALSFSAREAV 329          
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.500e-39
Identity = 90/242 (37.19%), Postives = 140/242 (57.85%), Query Frame = 0
Query:    1 MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPATLLLGMEI--SQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREPDNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQHLAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSGYIFILTGV-ISASSTLQKVTAQSTVHAELIAMATAAREAL 239
            +Y+Y H      L +YVDD  LAG     +  +K +L ++F+MTD G A+L+LGMEI   +    + +SQ  Y  ++L++F +      +TPG G+EI         L++ +T+ YQGIVGSL+++    R++I Y+   L R M KP+  H+  AK  LRYL G  D  I +++G +KL  + D+N+A   +    +S+S Y+ +L    +S  S LQ +TA ST+ AEL+A A A  EA+
Sbjct: 1332 VYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPD--NGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAV 1571          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5378.13582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE1.120e-11273.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF1_9PHAE1.730e-10755.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE5.770e-10179.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFG1_9PHAE5.290e-9176.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCZ9_9PHAE1.890e-5378.45Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L4S3_9PHAE3.230e-4272.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE9.710e-4236.78Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5L5U2_9PHAE1.500e-4137.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JW03_9PHAE1.950e-3935.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE2.500e-3937.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..90
e-value: 2.5E-18
score: 66.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 57..238
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 57..238
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 12..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5378contigL-elsbetiae_contig5378:508..1281 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5378.13582.1mRNA_L-elsbetiae_contig5378.13582.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5378 507..2040 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5378.13582.1 ID=prot_L-elsbetiae_contig5378.13582.1|Name=mRNA_L-elsbetiae_contig5378.13582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
MYVYGHGSTYAMLCVYVDDCTLAGKTPSVVQDLKEQLSRKFRMTDGGPAT
LLLGMEISQTDGEIPVSQHNYVLNLLDKFNMKDCTTVATPGTGAEIEREP
DNAIYLNDMDTKFYQGIVGSLLFLTNTTRWEIGYSVMILCRGMNKPTNQH
LAGAKRVLRYLRGKPDMPIKFRRGQWKLHGYCDANFAGASEALQKRSSSG
YIFILTGVISASSTLQKVTAQSTVHAELIAMATAAREALCSCRANCYGNG
SGGGTLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like