prot_L-elsbetiae_contig5368.13565.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5368.13565.1
Unique Nameprot_L-elsbetiae_contig5368.13565.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length892
Homology
BLAST of mRNA_L-elsbetiae_contig5368.13565.1 vs. uniprot
Match: D7FJ94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ94_ECTSI)

HSP 1 Score: 735 bits (1897), Expect = 1.690e-249
Identity = 449/939 (47.82%), Postives = 521/939 (55.48%), Query Frame = 0
Query:    1 TSFQFLDGNGLLSCESVSYRWRCAADRTSLWKRACVAAFPHLGD---TPSPYLSCSAYEGDWRETFLDGNRGNRSTVLDWKMEAVTG--VDEGDGVD--DPDESQRRFFPPFSLCGYSFSLLADPRGNPRATNQVPA-GAPRVEKGLSVYLTVLFQEDPPDAPPWG--GSVAAASSHGFPPPPLPLGPGHPWGAAEEGEEXXXXXQDRARLGVLDVEQGGGLALRATGDGVSDENGKGDAKEATAAWVKRDPHGLRRRRRRARTREGKAPVVSHLGDSAAIARECCAGFSLTAVNKDSDKDVMWISSMKRDRFFPGRSSWGVHCLVPMSTFQDPEEGFLQGGAATVRLRVRLLFLTAHVYTTADLASHRGFGVVPVRGNDQPFHFHG----KPEGGQENSRSMPWNPATNSVSPERTEESXXXXXXXXSTPV--AGPLPCLTFEVLRCTTLEEMVSLVARALGLDSSEIRLWVITQHLTDAPLAPRQLLSEKDLPARFFDDGQASPSLFRLLSGDAVDETCRVRLWVQQRSDGGFWEAEAS-GPPHPSSFWXXXXXXXXXXXXXXXXXXXXXAGVLAEPMAGADGDACEGXXXXXXXXXXGRWSESSTSSPSGPMMPPRVRFGGVRLSRVSDLPSRQMQQLSMFASGGGGVVEPASAAPAGDENLGGDSASGTGAVDTAGVPTVVAEESLMLVFLKTLGLGSAGEQESTAAAA--------GAGEEAAATGGLPTYLTHAVMRGSSPLRSLFELTAELLQDGTAPEDLEAHIEDLPWAWQ----------------------VAALRGADGSAADRVPDGAPSSSGATQNRKKTVACRRFLACPPTVLAAGVGATGQQEQGGSPARLTLEQAGLSSGASICFFRAGGEVLARKTYGGVVKGLVEDMRLLLTRKGPLGRVHLVKVTAYLFGCSSVDGFAG 892
            T F+FLDGNGLLSCE+VSY WR A DR  LW+RAC++AFPHL D   + SPY  CSAYEGD+RETFLDGNRGNRSTVLDW MEAVTG   D  DG++  DP++S+RR+FPPFSLCGY F LLADP GNPRA +Q  A GAP VEKGLSVYLTV F +D P  PPWG  G    AS  GFPPPP  L  G PWGA E G                                               A  K DPHGLRRRRRRARTREG+A +VSH GD AAIARECC  FSL AV    DK V+W+SSM+ DRF+ GR SWGVHCL+PM   QDPE+GF++ G  TVRLR RLLFL  HVYTTADLASHRGFGVVPVRG D+ FHF+G    + E  QE SR+ P +    + +      S        STP    GPLPC+TFEVLRCTTLEE+  L+AR LG++   IRLWVI+Q  TD PLAPRQLLS K LPARF DDGQ SPSLFRLLSGDAVDETCRVRLWV+QR DGGFWE E        S  W                      G   EP +  DG    G          G W  SS S+       P   + GVRLSR +D+     Q    + S       P + +PA +                     +  EE + LVF+KTLGLG+   +ES +AA         G G   AA+   P YLTHA +R SSPLRSLFEL A       AP+DLEA++EDLPW WQ                       AA+RG                                                          +TLE+AGLSSG SICFFRAG     R+TY   V+GLVE+M +LL  +GPLGRVHL+K+   +  C S+ G+ G
Sbjct:   38 TVFEFLDGNGLLSCEAVSYCWRRATDRAHLWQRACMSAFPHLRDYYFSRSPYTCCSAYEGDYRETFLDGNRGNRSTVLDWNMEAVTGGAADGADGMEGGDPEQSERRYFPPFSLCGYLFMLLADPTGNPRAASQAEAAGAPPVEKGLSVYLTVAFHDDAPGTPPWGVGGVAGGASFEGFPPPPQHLLVGQPWGAEEAG--------------------------------------------GARAEAKSDPHGLRRRRRRARTREGRAAIVSHAGDPAAIARECCTAFSLAAVKTAGDKGVVWVSSMEGDRFWLGRRSWGVHCLIPMGKVQDPEQGFVKDGRLTVRLRARLLFLFLHVYTTADLASHRGFGVVPVRGRDRRFHFYGNDGTEQEEEQETSRNHPRDTPPAAATGSDGRSSPGGKKRNTSTPAKGGGPLPCITFEVLRCTTLEEVEGLIARTLGVEREGIRLWVISQPFTDGPLAPRQLLSGKGLPARFLDDGQNSPSLFRLLSGDAVDETCRVRLWVEQRGDGGFWETEGGRDATRLSRVWLRRRQQQRQKEK---------TGAPLEPSS--DGSRWSGDGGSGAGDTDGSWVSSSPST----QPDPEDNYAGVRLSRTADVYPFHQQSTLAWESASDESAPPTAGSPASEXXXXXXXXXXXXXXXXXXGQRIPPEERI-LVFVKTLGLGN---EESQSAAGTWRGGDSNGCGGGVAASPPTPKYLTHAALRASSPLRSLFELAAAEHDTALAPQDLEAYVEDLPWVWQSAVVATDPEIYNAETAEPSGGSTAAVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVGVTLERAGLSSGTSICFFRAGDRPAVRRTYNAAVEGLVEEMNMLLRGEGPLGRVHLIKMAEVVEICESL-GYQG 912          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5368.13565.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ94_ECTSI1.690e-24947.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 535..555
NoneNo IPR availableGENE3D1.20.1280.50coord: 3..77
e-value: 7.1E-6
score: 27.9
IPR008974TRAF-likeGENE3D2.60.210.10coord: 251..353
e-value: 1.1E-7
score: 33.8
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 103..342
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 3..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5368contigL-elsbetiae_contig5368:5454..11206 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5368.13565.1mRNA_L-elsbetiae_contig5368.13565.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5368 5454..11206 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5368.13565.1 ID=prot_L-elsbetiae_contig5368.13565.1|Name=mRNA_L-elsbetiae_contig5368.13565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=892bp
TSFQFLDGNGLLSCESVSYRWRCAADRTSLWKRACVAAFPHLGDTPSPYL
SCSAYEGDWRETFLDGNRGNRSTVLDWKMEAVTGVDEGDGVDDPDESQRR
FFPPFSLCGYSFSLLADPRGNPRATNQVPAGAPRVEKGLSVYLTVLFQED
PPDAPPWGGSVAAASSHGFPPPPLPLGPGHPWGAAEEGEEEDEEDQDRAR
LGVLDVEQGGGLALRATGDGVSDENGKGDAKEATAAWVKRDPHGLRRRRR
RARTREGKAPVVSHLGDSAAIARECCAGFSLTAVNKDSDKDVMWISSMKR
DRFFPGRSSWGVHCLVPMSTFQDPEEGFLQGGAATVRLRVRLLFLTAHVY
TTADLASHRGFGVVPVRGNDQPFHFHGKPEGGQENSRSMPWNPATNSVSP
ERTEESSSSSSSNSSTPVAGPLPCLTFEVLRCTTLEEMVSLVARALGLDS
SEIRLWVITQHLTDAPLAPRQLLSEKDLPARFFDDGQASPSLFRLLSGDA
VDETCRVRLWVQQRSDGGFWEAEASGPPHPSSFWQQQQQQQQQQQQQQEQ
QVEEEAGVLAEPMAGADGDACEGGGGGGGGASSGRWSESSTSSPSGPMMP
PRVRFGGVRLSRVSDLPSRQMQQLSMFASGGGGVVEPASAAPAGDENLGG
DSASGTGAVDTAGVPTVVAEESLMLVFLKTLGLGSAGEQESTAAAAGAGE
EAAATGGLPTYLTHAVMRGSSPLRSLFELTAELLQDGTAPEDLEAHIEDL
PWAWQVAALRGADGSAADRVPDGAPSSSGATQNRKKTVACRRFLACPPTV
LAAGVGATGQQEQGGSPARLTLEQAGLSSGASICFFRAGGEVLARKTYGG
VVKGLVEDMRLLLTRKGPLGRVHLVKVTAYLFGCSSVDGFAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR036047F-box-like_dom_sf