mRNA_L-elsbetiae_contig536.13548.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig536.13548.1
Unique NamemRNA_L-elsbetiae_contig536.13548.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig536.13548.1 vs. uniprot
Match: D8LNL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL1_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 5.310e-55
Identity = 115/197 (58.38%), Postives = 138/197 (70.05%), Query Frame = 3 
Query:  594 PGSPTMGSEGQQWVP----RSARAYTVADPAS--VANAREHH-ASLVYEIVFPQPGALGLNLRSHCVQKPAGARLGLPEYGCLRVQDCQSTWLKLVVNGGDLLISVNGEKLTGTSFSFAESISLCSRASLPRVFRFARLGNEASSAEIELALAGDV-CAVFDAVDTPHKRLVTAQLHPSAPPFFFLNAPTRQPVGTP 1160
            P +P MG EG +  P      A A   AD AS  VA A +H    LVYEI FPQ GALGLNLR++  ++PAGARLGLP YG L V D Q  +LK +V  GDLL+++NG+KLTG+ FSF ++I++CSRASLPRV RFAR+   AS+AEIE A   DV CA FDA+D P +RLVTAQLHPSAP  FFLN PTR+   TP
Sbjct:   43 PKAPGMGVEGPREEPWAAAEGAAAAAAADHASANVAKAGDHDDTGLVYEIAFPQAGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLKAIVEPGDLLVAINGKKLTGSRFSFEDAIAVCSRASLPRVLRFARMKG-ASAAEIECAFGADVVCATFDAMDAPQQRLVTAQLHPSAPSHFFLNPPTRRGTKTP 238
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BLAST of mRNA_L-elsbetiae_contig536.13548.1 vs. uniprot
Match: A0A6H5K263_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K263_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.190e-12
Identity = 52/109 (47.71%), Postives = 63/109 (57.80%), Query Frame = 3 
Query:  594 PGSPTMGSEGQQWVPRSARAYTVA---DP------------------ASVANAREHH-ASLVYEIVFPQPGALGLNLRSHCVQKPAGARLGLPEYGCLRVQDCQSTWLK 854
            P +P MG EG +  P +A   +VA   DP                  A+VA A +H  A LVYEI FPQPGALGLNLR++  ++PAGARLGLP YG L V D Q  +LK
Sbjct:  237 PRAPGMGVEGPREEPWAAAEGSVAARPDPGPXXXXXXXXXXXSDHPSANVAKAGDHDDAGLVYEIAFPQPGALGLNLRTYLAEQPAGARLGLPPYGSLEVLDAQKFYLK 345
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig536.13548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNL1_ECTSI5.310e-5558.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K263_9PHAE5.190e-1247.71AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig536contigL-elsbetiae_contig536:11949..15921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-22_002940.1
Exons6
Model size2307
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig536.13548.1prot_L-elsbetiae_contig536.13548.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig536 13090..15367 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.6477094-UTR-L-elsbetiae_contig536:11948..130891622816557.6477094-UTR-L-elsbetiae_contig536:11948..13089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig536 11949..13089 -
1691683645.9493039-UTR-L-elsbetiae_contig536:11948..130891691683645.9493039-UTR-L-elsbetiae_contig536:11948..13089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig536 11949..13089 -
1622816557.7300265-UTR-L-elsbetiae_contig536:15367..159211622816557.7300265-UTR-L-elsbetiae_contig536:15367..15921Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig536 15368..15921 -
1691683646.0230517-UTR-L-elsbetiae_contig536:15367..159211691683646.0230517-UTR-L-elsbetiae_contig536:15367..15921Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig536 15368..15921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.660234-CDS-L-elsbetiae_contig536:13089..131941622816557.660234-CDS-L-elsbetiae_contig536:13089..13194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 13090..13194 -
1691683645.9598615-CDS-L-elsbetiae_contig536:13089..131941691683645.9598615-CDS-L-elsbetiae_contig536:13089..13194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 13090..13194 -
1622816557.6729305-CDS-L-elsbetiae_contig536:13507..136011622816557.6729305-CDS-L-elsbetiae_contig536:13507..13601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 13508..13601 -
1691683645.970029-CDS-L-elsbetiae_contig536:13507..136011691683645.970029-CDS-L-elsbetiae_contig536:13507..13601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 13508..13601 -
1622816557.6864142-CDS-L-elsbetiae_contig536:13752..138651622816557.6864142-CDS-L-elsbetiae_contig536:13752..13865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 13753..13865 -
1691683645.9802563-CDS-L-elsbetiae_contig536:13752..138651691683645.9802563-CDS-L-elsbetiae_contig536:13752..13865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 13753..13865 -
1622816557.6974783-CDS-L-elsbetiae_contig536:14137..142721622816557.6974783-CDS-L-elsbetiae_contig536:14137..14272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 14138..14272 -
1691683645.9906127-CDS-L-elsbetiae_contig536:14137..142721691683645.9906127-CDS-L-elsbetiae_contig536:14137..14272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 14138..14272 -
1622816557.7089698-CDS-L-elsbetiae_contig536:14689..147821622816557.7089698-CDS-L-elsbetiae_contig536:14689..14782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 14690..14782 -
1691683646.00149-CDS-L-elsbetiae_contig536:14689..147821691683646.00149-CDS-L-elsbetiae_contig536:14689..14782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 14690..14782 -
1622816557.7199352-CDS-L-elsbetiae_contig536:15295..153671622816557.7199352-CDS-L-elsbetiae_contig536:15295..15367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 15296..15367 -
1691683646.012329-CDS-L-elsbetiae_contig536:15295..153671691683646.012329-CDS-L-elsbetiae_contig536:15295..15367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 15296..15367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig536.13548.1

>prot_L-elsbetiae_contig536.13548.1 ID=prot_L-elsbetiae_contig536.13548.1|Name=mRNA_L-elsbetiae_contig536.13548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
MSEVLFGRQPSAGPGSPTMGSEGQQWVPRSARAYTVADPASVANAREHHA
SLVYEIVFPQPGALGLNLRSHCVQKPAGARLGLPEYGCLRVQDCQSTWLK
LVVNGGDLLISVNGEKLTGTSFSFAESISLCSRASLPRVFRFARLGNEAS
SAEIELALAGDVCAVFDAVDTPHKRLVTAQLHPSAPPFFFLNAPTRQPVG
TPQ*
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mRNA from alignment at L-elsbetiae_contig536:11949..15921-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig536.13548.1 ID=mRNA_L-elsbetiae_contig536.13548.1|Name=mRNA_L-elsbetiae_contig536.13548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3973bp|location=Sequence derived from alignment at L-elsbetiae_contig536:11949..15921- (Laminarionema elsbetiae ELsaHSoW15)
GCCTGGCCTCATGCCGGCGAGCACACCGTCACCAGGCCCGCTAGGTGAGA
TTTCGATACGTGGATACTCGAACACGAATCAGCATTCCGATACTTGTCGC
AGACCTTGCTGTAGGGTGCACTAGACCACTGTACTGCCTGCCTTCAAAGA
GTATTCAGCTGCACGAAAACACGTTACATATGCCAGGATACTAGATAGAC
CATGTAAAGTTCAAACGGTACTAAATTCACTACACTATACCCTAGACTTC
TTTAGAAGAGCTTCAAGCAGTACATTTATGTACACAAGTTCCTTTCGCTC
TGGCCGAACTACTGCCGCAGTTACATATATTTTCTCCCCCCCCCCCCTCG
GCAGCCTGTGTGCGTTCTATCCATGTAAACTAAAAAGTCGGCAGAACGCC
TGCTACTCGTAGATATTAGTCACCTTCCGTGCTAACTTTTTGTTTCCAAT
TCCTCCGCATGCAAGAGGAGTGTGGCGACCGGAGACTACTCTCTGCCTAT
TCTGTTCGTTCTCTCTTTTGGTGTTCTCATTGTGCCCCCAGCTGACAGAT
TCCAATGAGTGAGGTGTTATTTGGGCGGCAGCCGTCAGCCGGACCAGGGT
CGCCGACTATGGGGTCGGAGGGTCAGGTAATACTTGATCCTGGTAGATAT
ATAGATCCAACCGTGGAATTGAAACATCACCGACGACGACTATAGATATA
TCGCATGCGGCCAGTTATTTGCATTCAGCAAGGGTTGGCAATAGACTCGA
TTTATTGGCCGCTCCTAAAGCTGACCAACTCCTGGAAGCCCTTCTACGTG
TCCATCTTGCTCCATTCCTCTGCGCTACGCTCTCTAGAGCGATGATGGGC
CGTTATCTGCATGTCGTGTGAACAAATTCTTGCTTGCCCATCTGGGCTTG
GTCCCCCCTGTGATCTGTGGGACGTGTGTTTCGTCCCACCCGCTCCTCAA
TACATGTATGTGTAAGTTCCAATTACTAATTTAGCTACGCCTCTGACCAC
AAACACAGCCGCTTGTCTTGAGCAGCGCCGAAAGATGAACTGTGCATCTA
TTTCTCCGGTCTCGACGGGATTCTGTATAAAGCTCCCTTTGCATTTTCCG
CTTCTCGTTTCACGTATGTGCATGTCGCCTGCCTCACAGCAGTGGGTACC
ACGGTCAGCCCGCGCGTACACGGTGGCAGACCCCGCGTCTGTTGCGAACG
CGCGAGAACACCACGCGAGTCTAGTTTATGAGGTGCGAGTCGCTACATGC
AGGCGTGTACGCAGTGTGTGTCAAATTTGAACGGTTTGTGATGCGCTTGT
TTGATTCATGCCATGGAACCAGGTGTTCATCGTTTCACCCGAACACAGCG
TGCCTAGAAGACGCTGTGACTTTCTCCTGCTTTTCTCTTATGTTCTGTCA
TTCGCATGCGTCGTCAGCAACGCCTAAAGAACAAGTGAAATCTGAAGACG
GTGGGCCTTCCTTCTTTGATGACCCTGACTGTTGCGCTGATATATATATA
CAAAGCTAATCACCCCTTGCATACATACAGAATGGCGGTGTCACAGCATG
CTCGAACAGACGAGTTGAGCGCGATGAGCACCACGAACTGAAGACGTAGG
CTCGACACGATACATGTACCCCCCCCCCCCCTCGTTATTGTTTTGTCAGA
TAGTTTTCCCTCAACCAGGCGCACTGGGGCTCAACCTTCGATCCCACTGC
GTGCAAAAACCAGCAGGAGCACGGCTTGGCCTACCCGAATATGGATGCTT
AAGGGTGCAGGATTGTCAGAGTACTTGGTTAAAGGTAAGTAGGCGCAGAC
CCGATCACTCTGGCTTGAAGGTGGCCGTCGAAGAGGACCTAGGGCGCGCG
GAAAGCGTGTTCTTTCGAGTCCGGCTTTTGAACAACCTAATTCAAGAGCG
ACGTGCTTGCGGGTAAGAGCATTGCTGTTGTGCATACTACTATTTACAAG
ACAAGTAATATTTTTACACGCACACGCACACCGTCTACCTGGCTGTCGGG
TCTGTCCGCTTATATTTGTTTTTTCTCTGCGCGCTGTGCTGCTCCCTAAT
CATCAGCTCGTAGTCAACGGTGGCGACCTTCTGATCTCAGTCAACGGGGA
AAAACTGACGGGAACCAGTTTCAGTTTCGCCGAGAGCATATCGCTGTGCA
GCAGAGCATCTTTGCCAAGGTGAAAAAACGAAGTTTCTTCGCGACGCAGG
ATGAGCGACAAATGATACGTGTCTCTTTCCATGCGGTGCAACTGCTGTTT
GCCGATACAAGGAGTGACTTCGATATGCTCCATTTCTGAAACATAAGCAC
GCGTGCGTGGGATGTACCAGGGTGTTCCGGTTTGCGAGGCTAGGCAATGA
GGCATCTTCCGCGGAGATCGAGCTCGCATTGGCGGGTGATGTCTGCGCAG
TGTTTGATGCCGTGGTGAGTCTGTGCGAAAGGTGGAGGGGAGCTGAGTAC
ACTGTACAGTAGTAAGTGGTTTTCTACCTGGGGCGAACTTGAGACGATGT
TGCGCCTGATATATCTTCACCTTGTTCTTCTTGTTGTCGCCATGGCATGA
CTCTCTTGGGGGAACGTCTGGGAAAGGCCTTCGATCCACGTATGTAGGAT
TGCCGCGACAGCTGGAAGCTGCTGGTCAATCGCCTGCTGCAGTGGATGCC
AGCGGTGTTGAATAACCACCACAGCGCATCTGAAGTTTTTCTCACAGTTT
TCCTCTCTGCTTCACCCTCGCATGCAGGACACACCTCACAAGCGCCTGGT
GACGGCGCAGCTGCACCCTTCCGCTCCACCTTTTTTTTTCCTGAACGCAC
CGACCAGACAGCCAGTTGGCACGCCGCAGTAGACAACTGGGCTGCGGTTA
CCACGGCTCCTGCAGTTTTGTAGCCATCTCCAGCACCACCGCTGCTGCAC
TACTGCCGCACAGAGCTTGTCGCCGACAAACACTACAGCAGGGGACTGTT
CGGCGACAGACTTCGACTGATGGAATTGCTCCTTTCCTGCACCTTCAGCA
GTCAGTCGGGGCGATCTCAGCACTCCCAGCTTTCTCCTGAACGTTCGCTG
GATGCGAACGCGTTTATCGAACGTGGGCAAGCATAGCGGCGAAGCTTAAA
ATTGCCGTGTAGTGAGATTCGGGCTGATTCATACCCTGCTGTAGCTGCAG
ATTTTCTATCCTTGAACCTCTACAATTATATGATTTCCTGTATTGTACGG
TGACAGCAACAACAACGCTACCATGAGGGAGTTATGAGTGTTTTTTTCTT
ATCTTGTCTGGGGTCCTTTTTGCCCTGATCTTGTTTTCTATCACGTGGGC
GGTAAATTCGGTGGGGAGAACTAGATTTGTGGGCCTGACCGGCGAGAACC
CGGCACGGAACACCCTGGCATTTGTATGGTACCAGATAGAACCAGGGGGT
GTATACCCCCGGTTTGGTGATTTTGGCTTGTCCACTTTTGTTTTTACCTC
GCGGGAATCGACCGCGTCAGTGTTCGATTAGTACGGACTCATGGAGGTGA
TCGGAACGTTTTTTTTTAATGTGAAGACAACAACATTGTGTGTGGAGGGG
AGCGTGGGGCTCTACACATATTTGTCTTTGATTTTTGTCGCTTTGCTAAC
CCTCCGGGTCCATTTTATGTTTATATACCTATTTTTAGGTATAATATGGC
CTAGAAACACCGCAAAAACGGCTGATATTCGCCGAGTACCTTTGATTTTG
GTCAGGACTGTCAAAAACATGCGGAGGTTTTTGGAACGCCGACACAAACT
TCAAGAGAGGCTCCGTGATGTTCAGCGGGGGTATGTGATAATCTTCGAAA
TAGGCGTATACTGATCAATGGGTACCCCTTCCCATCCCTTAAGTGGGGCG
TCATTTGTACCACAGGGGGTCACAGCCGGGTTTTTCGGTTTTCGCGGACA
TTCGTCGCCGGCTTTCTCCTTATCCTCTCCAACGATTTTCCCCATACGCG
GGGGGCATAACCTCGAGGCCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig536:11949..15921-

>mRNA_L-elsbetiae_contig536.13548.1 ID=mRNA_L-elsbetiae_contig536.13548.1|Name=mRNA_L-elsbetiae_contig536.13548.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig536:11949..15921- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGAGGTGTTATTTGGGCGGCAGCCGTCAGCCGGACCAGGGTCGCC
GACTATGGGGTCGGAGGGTCAGATGAGTGAGGTGTTATTTGGGCGGCAGC
CGTCAGCCGGACCAGGGTCGCCGACTATGGGGTCGGAGGGTCAGCAGTGG
GTACCACGGTCAGCCCGCGCGTACACGGTGGCAGACCCCGCGTCTGTTGC
GAACGCGCGAGAACACCACGCGAGTCTAGTTTATGAGCAGTGGGTACCAC
GGTCAGCCCGCGCGTACACGGTGGCAGACCCCGCGTCTGTTGCGAACGCG
CGAGAACACCACGCGAGTCTAGTTTATGAGATAGTTTTCCCTCAACCAGG
CGCACTGGGGCTCAACCTTCGATCCCACTGCGTGCAAAAACCAGCAGGAG
CACGGCTTGGCCTACCCGAATATGGATGCTTAAGGGTGCAGGATTGTCAG
AGTACTTGGTTAAAGATAGTTTTCCCTCAACCAGGCGCACTGGGGCTCAA
CCTTCGATCCCACTGCGTGCAAAAACCAGCAGGAGCACGGCTTGGCCTAC
CCGAATATGGATGCTTAAGGGTGCAGGATTGTCAGAGTACTTGGTTAAAG
CTCGTAGTCAACGGTGGCGACCTTCTGATCTCAGTCAACGGGGAAAAACT
GACGGGAACCAGTTTCAGTTTCGCCGAGAGCATATCGCTGTGCAGCAGAG
CATCTTTGCCAAGCTCGTAGTCAACGGTGGCGACCTTCTGATCTCAGTCA
ACGGGGAAAAACTGACGGGAACCAGTTTCAGTTTCGCCGAGAGCATATCG
CTGTGCAGCAGAGCATCTTTGCCAAGGGTGTTCCGGTTTGCGAGGCTAGG
CAATGAGGCATCTTCCGCGGAGATCGAGCTCGCATTGGCGGGTGATGTCT
GCGCAGTGTTTGATGCCGTGGGTGTTCCGGTTTGCGAGGCTAGGCAATGA
GGCATCTTCCGCGGAGATCGAGCTCGCATTGGCGGGTGATGTCTGCGCAG
TGTTTGATGCCGTGGACACACCTCACAAGCGCCTGGTGACGGCGCAGCTG
CACCCTTCCGCTCCACCTTTTTTTTTCCTGAACGCACCGACCAGACAGCC
AGTTGGCACGCCGCAGTAGGACACACCTCACAAGCGCCTGGTGACGGCGC
AGCTGCACCCTTCCGCTCCACCTTTTTTTTTCCTGAACGCACCGACCAGA
CAGCCAGTTGGCACGCCGCAGTAG
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