Homology
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
D7G8N0_ECTSI (50S ribosomal protein L24, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N0_ECTSI)
HSP 1 Score: 278 bits (711), Expect = 3.900e-89
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 1
Query: 25 CSSQDMKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
CSS DMKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEK+NVRSLPVR GDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDR ALL RKDR+RNGGKPAAG ADADVNMAGVD
Sbjct: 22 CSSFDMKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKYNVRSLPVRAGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRVALLARKDRSRNGGKPAAGAADADVNMAGVD 171
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
A0A835YVZ0_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ0_9STRA)
HSP 1 Score: 200 bits (509), Expect = 2.930e-59
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 1
Query: 40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
MK+NPNV+SSRRKSRKAHF A S RR++MSA LSK+L K+NVRS+PVRK DEVMVVRG YKNREGKV CYRRK+VIHIER+TREKANG TV +GIHPSKV ITK+K+DKDRK LLERK R G A ++ DVNMAGVD
Sbjct: 1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGA-AKKASEKDVNMAGVD 144
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
A0A451FLG4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Eustigmatophyceae sp. Mont 10/10-1w TaxID=2506145 RepID=A0A451FLG4_9STRA)
HSP 1 Score: 188 bits (478), Expect = 1.220e-54
Identity = 100/145 (68.97%), Postives = 115/145 (79.31%), Query Frame = 1
Query: 40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
MK NPNV+SSRRKSRKAHF A S RRVLMSA LSKDL K+ VRS+P+RK DEV VVRG +KN +GKV YR+KFVIHI+RITREKANG TV+VGIHPSKV ITK+KM+K RKA+LERK R + K +ADVN+AGVD
Sbjct: 1 MKFNPNVSSSRRKSRKAHFSAPSHMRRVLMSAPLSKDLQAKYKVRSMPIRKEDEVTVVRGRHKNSDGKVTQVYRKKFVIHIDRITREKANGATVNVGIHPSKVVITKLKMNKSRKAILERKARKSDADKAKGKFTEADVNLAGVD 145
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
A0A7S2C9Q4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9Q4_9STRA)
HSP 1 Score: 186 bits (473), Expect = 6.090e-54
Identity = 94/145 (64.83%), Postives = 119/145 (82.07%), Query Frame = 1
Query: 40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
MK +PNV+S R KSRKAHF A S +R +MSA LSKDL K+NVRS+P+RK DEVMVVRG++KNREGKV YR+K+VIHIER++R+KANG V++GIHPS ITK+K+DKDRK +L+RKDR+++ K G++DADVNMAGVD
Sbjct: 1 MKFSPNVSSDRNKSRKAHFTASSSQKRKIMSASLSKDLVSKYNVRSMPIRKDDEVMVVRGSHKNREGKVIQVYRKKYVIHIERVSRDKANGAPVNIGIHPSNCVITKLKLDKDRKNILDRKDRSKDSSK---GLSDADVNMAGVD 142
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
A0A3R5U3L5_9STRA (50S ribosomal protein L24, chloroplastic n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5U3L5_9STRA)
HSP 1 Score: 186 bits (473), Expect = 6.920e-54
Identity = 96/145 (66.21%), Postives = 117/145 (80.69%), Query Frame = 1
Query: 40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
+K NPNV+SSRRKSRK HF A S RR++MSA LSKDL K+ VRS+P+RK DEV VVRG++KNR+GKV YR+KFVIHI+R+TREKANG TV+VGIHPSKV ITK+K++K RKA+LERK RT K + +ADVN+AGVD
Sbjct: 2 VKFNPNVSSSRRKSRKQHFTAPSHVRRIIMSAPLSKDLRAKYKVRSIPIRKEDEVTVVRGSFKNRDGKVTQVYRKKFVIHIDRVTREKANGATVNVGIHPSKVIITKLKLNKSRKAILERKARTSAADKNKGKLTEADVNLAGVD 146
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
A0A7J6P5Z0_PEROL (60S ribosomal protein L26 n=7 Tax=Alveolata TaxID=33630 RepID=A0A7J6P5Z0_PEROL)
HSP 1 Score: 185 bits (470), Expect = 1.750e-53
Identity = 96/145 (66.21%), Postives = 119/145 (82.07%), Query Frame = 1
Query: 40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
MK +P V+SSRRKSRKAHF A S+ RR++MSA LSK+L K+NVRS+P+RK DEVMVVRG Y +REGKV CYR+KFVIHIER+TR+K NG+ +VG+HPSKV ITK+KMDKDRKALLERK+R+++ GK + + DV MA VD
Sbjct: 1 MKFSPAVSSSRRKSRKAHFTAPSDQRRIIMSAPLSKELRAKYNVRSVPIRKDDEVMVVRGHYSDREGKVTACYRKKFVIHIERLTRDKVNGSHANVGVHPSKVVITKLKMDKDRKALLERKNRSKDSGKKS--YTEKDVAMAQVD 143
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
T0Q9Y6_SAPDV (50S ribosomal protein L24, chloroplastic n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q9Y6_SAPDV)
HSP 1 Score: 184 bits (468), Expect = 3.570e-53
Identity = 96/145 (66.21%), Postives = 112/145 (77.24%), Query Frame = 1
Query: 40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
MK N V SSRRK RKAHFGAHS RRVLMSA LSKDL K+NVRS+P+RK DEV +VRG++KNREG+V CYR+KFVIH+ER+ +EK NG V VGIHPSKV ITK+K+DKDRK +LERK+R G K +ADV MA VD
Sbjct: 1 MKFNSTVTSSRRKCRKAHFGAHSTQRRVLMSANLSKDLQSKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRAV-GDKNKGKFTEADVAMANVD 144
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
A0A7S2V566_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V566_9STRA)
HSP 1 Score: 183 bits (465), Expect = 1.030e-52
Identity = 93/145 (64.14%), Postives = 111/145 (76.55%), Query Frame = 1
Query: 40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
MK+ V+SSRRKSRKAHF AHS ARRV+MSA LSKDL K+NVRS+P+RK DEV V RG +KNREGKV CYR+K+V+H+ER T+EK NG VHVGI PS V ITK+K+DK+RKA+LERKDR + K + DVNM VD
Sbjct: 1 MKVKNTVSSSRRKSRKAHFSAHSTARRVIMSAPLSKDLQAKYNVRSMPIRKDDEVQVTRGYFKNREGKVVQCYRKKYVVHVERCTKEKTNGAQVHVGIAPSNVVITKLKLDKNRKAILERKDRAKGAEKGKGKYTETDVNMGNVD 145
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
A0A7S3LFZ3_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LFZ3_9STRA)
HSP 1 Score: 182 bits (463), Expect = 1.840e-52
Identity = 96/145 (66.21%), Postives = 113/145 (77.93%), Query Frame = 1
Query: 40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
MK NPNV+S+RRKSRKAHFG+HS ARR LMSA LSK+L EK+NVRSLP+RK DEV + RG +KNREGKV YR+KFVIH+ER+ R+KANG GIHPSKV ITKIK+DKDRKALL+RK++ K DADV M+ VD
Sbjct: 1 MKFNPNVSSARRKSRKAHFGSHSTARRKLMSAPLSKELQEKYNVRSLPIRKDDEVTIARGTFKNREGKVIQVYRKKFVIHVERVLRDKANGGNFPAGIHPSKVIITKIKLDKDRKALLDRKNKLE---KDKGKFTDADVAMSNVD 142
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match:
A0A1V9ZGA6_9STRA (50S ribosomal protein L24, chloroplastic n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA6_9STRA)
HSP 1 Score: 182 bits (463), Expect = 3.070e-52
Identity = 97/153 (63.40%), Postives = 113/153 (73.86%), Query Frame = 1
Query: 16 RFFCSSQDMKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
R S K N V SSRRK RKAHFGAHS RRVLMSA LSKDL K+NVRS+P+RK DEV +VRG++KNREG+V CYR+KFVIH+ER+ +EK NG V VGIHPSKV ITK+K+DKDRK +LERK+R G K +ADV MA VD
Sbjct: 7 RCTLSQASAKFNSTVTSSRRKCRKAHFGAHSTQRRVLMSANLSKDLQAKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRAI-GDKNKGKFTEADVAMANVD 158
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.90e-89 / Id = 95.33 Expect = 2.93e-59 / Id = 72.41 Expect = 1.22e-54 / Id = 68.97 Expect = 6.09e-54 / Id = 64.83 Expect = 6.92e-54 / Id = 66.21 Expect = 1.75e-53 / Id = 66.21 Expect = 3.57e-53 / Id = 66.21 Expect = 1.03e-52 / Id = 64.14 Expect = 1.84e-52 / Id = 66.21 Expect = 3.07e-52 / Id = 63.40 Sequence D7G8N0_ECTSI A0A835YVZ0_9STRA A0A451FLG4_9STRA A0A7S2C9Q4_9STRA A0A3R5U3L5_9STRA A0A7J6P5Z0_PEROL T0Q9Y6_SAPDV A0A7S2V566_9STRA A0A7S3LFZ3_9STRA A0A1V9ZGA6_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 271.6
Seed ortholog evalue 2.2e-70
Seed eggNOG ortholog 2880.D7G8N0
Preferred name RPL26
KEGG ko ko:K02898,ko:K18449,ko:K20068
KEGG Pathway ko03010,map03010
KEGG Module M00177
Hectar predicted targeting category other localisation
GOs GO:0000075,GO:0000077,GO:0000184,GO:0000278,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009409,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010212,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022402,GO:0022613,GO:0022625,GO:0022626,GO:0023051,GO:0023052,GO:0023056,GO:0030330,GO:0030424,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031570,GO:0031571,GO:0031667,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0042254,GO:0042273,GO:0042594,GO:0042770,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043516,GO:0043517,GO:0043603,GO:0043604,GO:0043679,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044306,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045047,GO:0045184,GO:0045202,GO:0045727,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0097458,GO:0098588,GO:0098793,GO:0098805,GO:0104004,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902162,GO:1902164,GO:1902165,GO:1902167,GO:1902229,GO:1902231,GO:1902253,GO:1902255,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902533,GO:1902806,GO:1902807,GO:1903047,GO:1904803,GO:1990904,GO:1990928,GO:2000045,GO:2000112,GO:2000134,GO:2001020,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc. regulation of translation involved in cellular response to UV
EggNOG OGs COG0198@1,KOG3401@2759
COG Functional cat. J
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE br01610,ko00000,ko00001,ko00002,ko03011,ko04131
Ec32 ortholog description 60S ribosomal protein L26
Ec32 ortholog Ec-22_002330.1
Exons 4
Model size 1416
Cds size 438
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816557.5600417-UTR-L-elsbetiae_contig536:5779..5818 1622816557.5600417-UTR-L-elsbetiae_contig536:5779..5818 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig536 5780..5818 +
1691683645.8757348-UTR-L-elsbetiae_contig536:5779..5818 1691683645.8757348-UTR-L-elsbetiae_contig536:5779..5818 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig536 5780..5818 +
1622816557.6184883-UTR-L-elsbetiae_contig536:10806..11745 1622816557.6184883-UTR-L-elsbetiae_contig536:10806..11745 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig536 10807..11745 +
1691683645.9391248-UTR-L-elsbetiae_contig536:10806..11745 1691683645.9391248-UTR-L-elsbetiae_contig536:10806..11745 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig536 10807..11745 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816557.5749142-CDS-L-elsbetiae_contig536:5818..5819 1622816557.5749142-CDS-L-elsbetiae_contig536:5818..5819 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig536 5819..5819 +
1691683645.8912656-CDS-L-elsbetiae_contig536:5818..5819 1691683645.8912656-CDS-L-elsbetiae_contig536:5818..5819 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig536 5819..5819 +
1622816557.5859303-CDS-L-elsbetiae_contig536:6796..6924 1622816557.5859303-CDS-L-elsbetiae_contig536:6796..6924 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig536 6797..6924 +
1691683645.9037342-CDS-L-elsbetiae_contig536:6796..6924 1691683645.9037342-CDS-L-elsbetiae_contig536:6796..6924 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig536 6797..6924 +
1622816557.5957177-CDS-L-elsbetiae_contig536:9878..10020 1622816557.5957177-CDS-L-elsbetiae_contig536:9878..10020 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig536 9879..10020 +
1691683645.9184432-CDS-L-elsbetiae_contig536:9878..10020 1691683645.9184432-CDS-L-elsbetiae_contig536:9878..10020 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig536 9879..10020 +
1622816557.6079636-CDS-L-elsbetiae_contig536:10639..10806 1622816557.6079636-CDS-L-elsbetiae_contig536:10639..10806 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig536 10640..10806 +
1691683645.9291203-CDS-L-elsbetiae_contig536:10639..10806 1691683645.9291203-CDS-L-elsbetiae_contig536:10639..10806 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig536 10640..10806 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig536.13547.1
>prot_L-elsbetiae_contig536.13547.1 ID=prot_L-elsbetiae_contig536.13547.1|Name=mRNA_L-elsbetiae_contig536.13547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVR KGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHP SKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD* back to top mRNA from alignment at L-elsbetiae_contig536:5780..11745+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig536.13547.1 ID=mRNA_L-elsbetiae_contig536.13547.1|Name=mRNA_L-elsbetiae_contig536.13547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5966bp|location=Sequence derived from alignment at L-elsbetiae_contig536:5780..11745+ (Laminarionema elsbetiae ELsaHSoW15)ACAGGACGTCGGGCGAGGTTCTTCTGCTCTTCTCAAGAC A GTGAGTGCTT
TGGAGAAAAAATAGCACGGGTATAGTTCCCCCCATAGACTTTGCAAGAAA
CTAGAGCTATCACGTGTGTGTGTTCGTTGTTCGACAGAGACAAGCCACAC
ACACCAGTTGCCACCCATTTTCGGGCTCTGTGGGGCCGTAGGGCGGAGGA
GAGAACTGGGACACGAAACACAACATCCCTGTTGGATATGGATGCATGTT
CATAGTGGCTCCGTACTGCTTCCAGGTTGAAAGGCTGATTCAAATAAAGG
ACGCTCGCAGCACTTTGATGCATGCAGCTCTCTCGGCTTGGACGTTCGGT
TTGCCTGGTTGCGGCTTGATGACAAGCGGCTTCGTTCGTGTCCTGTAGGG
GCTTGAGCGCCCACAAGCGTATGGCCTAAGTCTTGCTCCGAATGCGAAAC
GGTACGATGTAGGGTTGCTCGCGTCCTAGCTGGTGAATAGACAATACGCT
TTTGTTGGCTCTCTTTCGCGTGCCATTCCCGAGGGTTGCCCGATAGTCAA
GTCATTAGCGCAGTAGCAGAAGCACACTCTCTTCCGTGTGACCCCTCTCT
ATGCAGCACGAGCCAATTTCCTGCTGGATCTAGTGAGGCACCTGCTATGT
AGCTGTGTTAACCTTGTCTTCGGTGTGTGGGAAGTCGAAAATAGATTTAC
ATACGTGCCGGCGGGCGAAGCTGTAGATTATGTAGCCTACTCTATCGGCA
AGGTACCGAGCTCTGCAGAGGCAGCGATAGACCAGCCACAACAGTAGTAA
GGCAAAGCAGTGAGTGCAACGGAGATTTTTCCTCCCCCGTTACATGGTAT
TCCTGGGTGTCTACGTTCTTGTTTATGCATGTTTACAGTACCATGCGATC
TCGGTACATCAGTGTTATCATGCCGTTTTTTTCCAGTACTCGTCGGGGTA
CCGCAGCTCTAACGTGTGCGTGTTCCGCCACCCCCCGCACTCGTTTGTAT
CTTTGGTGGGAGCGCAGTGAAGCTCAACCCGAATGTGGCGTCCTCTCGGC
GTAAGAGCCGCAAGGCACACTTCGGTGCGCACTCTGAGGCCCGCCGGGTG
CTCATGTCCGCGGGCCTGAGCAAGGACCTCTTCGAGAAGCACAAC GTGAG
TACAGCAGGCTACCCTGTCTTGGAGTAGAGTCCTCAAGCATTTTACATTT
TCTCTCAGTTAGAAAGAAGAGCTGTTACAAAGCGTACCTTTTGTTAGAGG
GATGGAGATGGCCTCATACAATCAGTGAATGGTGCATCGCTTCCGTTTGA
TAATAGTGATGGATTCAGAGAAGATGCATCGAGACTTGCTTGGCGTGACA
AAGCCATGCGTCGATATGTTTTACCGGGTTTGCACGTCTTGTAGGTTATT
TAGCGTTCGGGTTGGCGGCTGGTGGCCAGTGATGACGAAACTTTATAAAG
ACTTTGATGCTGATTTTGACCCTGATGAGCAAACACAAGACTACGATGGA
CTGAGGCTCTGCCAGCCGTTTTGTAGTGATTCTCTTCCAGATGTGAAAAC
AACCAGGTTACCCCCATGGGCTGGCTGCCGCAGCCCGCAACAATCTATAT
TTTGTTTTGCGTCGTTGTCTACTGCTGCAGCTCCACTTTCTCCCAGGAAA
ATCTATATCACTTTCGTACCGTTAGCTTACGATGCATGCATAATGTTACG
CGCGGCGACCTGTGATGACGAAACTTTATAAAGACTTTGATGCTGATCTT
GACCGTGATGAGCAAATACAAGACTACGATGGACTGAGGCACCGCTCTTT
TTTTTCACATTCTTCATGCGTCGATGCTTACCTCTATCTAGACGAGGATT
CACGTTTTCATTGTTCGTTTGAGAGTTTATCGCTACACAAAAAAACTTTT
TAGTGCCGCGAGTGGCGCGTGACCCTGTTCTAGTGGATGCGATTTTGTGA
CGATACACGTTCTTCCTTCCGCTTCATGTTTGGATACCAACCCGTAGGAG
GAGTGTGTGCAAAGTGAGCCCCCGTGATTACCCAGCAATCATACCAAGAT
CTGTTCCGAAAACACGATGTGGAACCATTGCAAATTCAGTCTTCAATATG
AAGGGGCTTTCTCGCGCACATGACAAAACGCTGTTGATCATGCACGTGCG
GTGTATTTAGTATTAACTTACTTGTGAGTGTGGACCTTCTGTGTTGACTC
TTTGTGGTGGTTGGTTGGCCGGTGCTGTGCGTACGGAAACGTCTCCTACC
GTGTAAGACAAGTACTGGTTTCCGTGGTCACTGGGCGGAGACCGGAAGCG
TTTGATCTGTTAGGATGACAATTTATCAAATCATCTCGTACAGGACTTGC
CTCTTTTTCATGAATGTTGTGGATATTCGAAGAACGGTAATGGTGACCTG
TGATGACGAAACTTTATAAAGACTTTGATGCTGATCTTGACCTTGATGAG
CAAATACAAGACTACGATGGACTGAGGCACCGCTCTTTTTTTCACATCCC
ACATGCGTCGATGCTTACCGTTGTCTAGACGAGGATTCACGTTTTTATTG
TTCGCTTGAAAAAATTTCGCTACAATACATACAAAAAACTTTTTTGTGTC
GCGAGTGGCGCGCGTGATCCTGTTGTACTCATGTTGAAAATAAAATATTT
CAACTTCTTTTTTAATAAATGCTGGCTGGTCCTCCCTTTGACCAAAAGGA
ATACATTAATCTGCAATGGGTGCGGTATTGTGACCACACAGGTTCTTACT
TTTGGTTCATGCTGGGTACCAATCCACTTGAGGAGTGTGTGCGAAGTGAG
CCCCCATGATTACTCAGCAATCATACCAAGATCTGTTCCGAAAACACGAT
GTGGAACGATCGCAAATTCAGTCTTCAATATGAAGGGGCTTTCCCGCGCA
CGTGACAGGAACATTGTTGATCATGCACTTGTGGTGTATTTAGTATTTAC
CTTGTGTGAGTGTGTACCTTCTGTGTTGACTCTGTGTGGTTGGTTGGCCG
GTGCTGTGCGTACGGAGAGCCTCCTGTCGGTTATATGTAGACTAGTGCAG
ATGTCCACGGGCACTGGGCGGAGACCGGAAGCGTTTGATCTGTCGAGACG
ATAATTTATCAATTCATCTCATACAGGACTTGCCTCTTTTTTTATGAATG
TTGTGGATATTCGAAGAACGGTAATGGTGACCTGTGATGACGAAACTTTA
TAAAGACTTTGATGCTGATCTTGACCTTGATGAGCAAATACAAGACTACG
ATGGACTGAGGCACCGCTCTTTTTTTCACATTCCACATGCGTCGATGCTT
ACCTCTATCTAGATGAGGTTCCGTGAAAGGTTATTCGTTTGAAATTATTG
CTAAAACTTTTTTATGCCTCTAGTGGCGCGCGACCTGTGTACTTGTCTTG
TTGTCAGCACTTCAAAAACCGTCCCGATCTCTCTACTCGGCACCTCCACC
CCTCCCTACTCATCCAACGCGTGACTTCTAATACGTACACATAATGTTTC
AAATAGTATCTAGACGTTGATGCTCGGCTTGCCTTAATGAGTGAAATAGT
TGGATACCAACCCGCGTGAGGATGTGTGCAAAGTGAGCCCCCATGATTAC
TCAGCTATCATACCAAGATCTGTTCCGAAAACACGATGTGGAACCATCGC
AAATTCAGTCTTCAATATGAAGGGGCTTTCTCGCGCACAAGGCAGGAACG
CTGTTGATCCGTGAGGGCGGTATCGGTCGTATAACTTGCCTCTTTCGTGG
TGCGTAATGTATCGTTTGTGACAATCGAAGAACGACAACGGTGACCCATG
ATGACGAAACTTTATAAAGACTTTGATGCTGATCTTGACCTTGATGAGCA
AATACAAGACTACGATGGACTGAGGCACCGCTTGCTTTATGTCAAATGTT
AGTTCGCTAACTGTGTTGTATGATCTCCGATGACTTTTTTCGCGGAGAAG
CACAGCCCTAAAGTATCGCGTGCATACCTTTTCGCTTCGTGACAAAACTT
CTGTGTACTTGGTGTTTCGCTCGTTTTGTCGTCGACGGTTGCGTTGTGTT
TCTTTTAGTCATGACATCGGATGACCTTCTCGTTTGCTTTGTTCCGCAGG
TCCGATCGCTCCCCGTGCGGAAGGGCGACGAGGTGATGGTGGTACGAGGG
GCCTACAAGAACCGCGAGGGCAAGGTGGAAACCTGCTACCGCCGCAAGTT
CGTCATCCACATCGAGCGCATCACCAGGGAGAAGGCCAACG GTAAGAAGG
CCATGCACTCATGCCTAAGGGGAGAATAGCCCAAGGGCGTGTTGACTGCT
GCTTGTTGTCAATACACGGTGTGCATAGTTGTAGCTGTGGTGCGCATGTC
TCATGAACGTCAGGCCCTAGTCTGGCCGGCGTGCGGTAGGGTTCCGTTGT
ATTACAGTTGTAGTTGAGCGACTACCGTAATCATGCAGGTTATCGCACCC
CCATGTTGACGTTTTTCTATAGCGTATTTCTCCGCAACCAGGAGGGTACC
ACTGCCGAAAAGGGTGGTTTTCGAAACGTCTCGTCGAGGGCTTTCCAGAG
AGGTATCAGTTAGTGCTCGCACCCTCCTGGTTGTGGAGAAATATGTTTTA
GAAAACTGCTGACACGGGGGTGCGTAACCCGCATGATTACGGTATGTCCG
GAGAGCTGTTCTTCTTGTTGGCATTAAATGCTGCCCGTCATGAGAACATA
CTGCCAAACCGCTTTATTGCCCATGACACCACTACTTGCTGAAACTCTCG
ATGACTCGTGTTTTATTTTGCCGCGAGAGTTGATTGTTTTGTGTTCGGCC
GTCCCTCACTACGCGTCGCGATCGTCCCCCAACATGTTCCGTCATCGAAA
AACCACACAGGCAACACCGTGCACGTAGGCATCCACCCTTCCAAGGTCCA
GATCACCAAGATCAAGATGGACAAGGACCGCAAGGCACTGCTGGAGCGCA
AGGACCGCACTCGCAACGGCGGCAAGCCCGCGGCCGGCGTCGCAGACGCG
GACGTGAACATGGCCGGCGTGGACTAA CTAGACTTGACGACTTGAGGACA
CACCCAACTCTTGAAAGAGCGGCGGTTGGAAGGGGAACGGGATTCGCTAC
TTTTCGTAGCGAGAGCGTCAGCACGCCGTTTACTCTTGTTATGTGGCGTG
TGCTTTAGCGTGCTGCCAAAAGTAGACCATTGCTGTGGACCGCGGGGCAG
TTGGCGTGATTCGTTCGCCCTGCCCAGTTGGTGTTTCTCTTGTCCCCCTT
CGAGGCGTGATCTTTCTCTGCAGGATGAAAAAAAATAAACATAAAAAAAA
GGACCTTGGCGTGGTTTCGCGGTACTGTAAAAAGGAACCAGGGCTTCTTT
CACGGGTGTCACTTCATGCACGGATGGCACCATGCGTGGCTTGTCGACGC
AACTGAGAACCCCACTGGTTCTTCAACGCACACATGCTTCCCTCGCCTGC
TTGGCATGTCGCACAGTTTTTGGCCCATGCCTTCAGCTCCTTCATCGCCC
GTGTGTATCCGCTGTGGGATGTTCTTTCCGAACACAACAGCAGTATGTTA
TGCCACGGATATGCCAACGAGCTTGCACCCTCTTGCAGTTCAAAAGTCAC
TTCATTTTTTGTTTGAAAAAGCGCGCGGCGTATTGGCATGTACGATAAAG
TTGACGGAGGTATAGCGGTGAGACTAGTACTTTGCAGGAAGAGCGACGTT
CTTTGACCTCCAAGTATTTTTACGGTCGTTCCTGCCACCTGCCCGACCAC
ACAAGGTGTCAACATATATTGAACCTCTGATGTGGTATTCAGAGTTCCTG
CGAAGCCTTTCCGCCTGTGTAACTTGTAACTTGTGGCCTGAGGGGAAAAA
ACTCCCGATAATTGCCGACCATCTGAGGGAAAATACGGCATGACGACAGG
CGGGAGCAGGCAGCGATAGACGGCGCAAACATATCGAAACAAGGTACACA
CAGCAGTATACAGACC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig536:5780..11745+
>mRNA_L-elsbetiae_contig536.13547.1 ID=mRNA_L-elsbetiae_contig536.13547.1|Name=mRNA_L-elsbetiae_contig536.13547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig536:5780..11745+ (Laminarionema elsbetiae ELsaHSoW15) AATGAAGCTCAACCCGAATGTGGCGTCCTCTCGGCGTAAGAGCCGCAAGG CACACTTCGGTGCGCACTCTGAGGCCCGCCGGGTGCTCATGTCCGCGGGC CTGAGCAAGGACCTCTTCGAGAAGCACAACTGAAGCTCAACCCGAATGTG GCGTCCTCTCGGCGTAAGAGCCGCAAGGCACACTTCGGTGCGCACTCTGA GGCCCGCCGGGTGCTCATGTCCGCGGGCCTGAGCAAGGACCTCTTCGAGA AGCACAACGTCCGATCGCTCCCCGTGCGGAAGGGCGACGAGGTGATGGTG GTACGAGGGGCCTACAAGAACCGCGAGGGCAAGGTGGAAACCTGCTACCG CCGCAAGTTCGTCATCCACATCGAGCGCATCACCAGGGAGAAGGCCAACG GTCCGATCGCTCCCCGTGCGGAAGGGCGACGAGGTGATGGTGGTACGAGG GGCCTACAAGAACCGCGAGGGCAAGGTGGAAACCTGCTACCGCCGCAAGT TCGTCATCCACATCGAGCGCATCACCAGGGAGAAGGCCAACGGCAACACC GTGCACGTAGGCATCCACCCTTCCAAGGTCCAGATCACCAAGATCAAGAT GGACAAGGACCGCAAGGCACTGCTGGAGCGCAAGGACCGCACTCGCAACG GCGGCAAGCCCGCGGCCGGCGTCGCAGACGCGGACGTGAACATGGCCGGC GTGGACTAAGCAACACCGTGCACGTAGGCATCCACCCTTCCAAGGTCCAG ATCACCAAGATCAAGATGGACAAGGACCGCAAGGCACTGCTGGAGCGCAA GGACCGCACTCGCAACGGCGGCAAGCCCGCGGCCGGCGTCGCAGACGCGG ACGTGAACATGGCCGGCGTGGACTAA back to top