mRNA_L-elsbetiae_contig5357.13541.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5357.13541.1
Unique NamemRNA_L-elsbetiae_contig5357.13541.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5357.13541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5357contigL-elsbetiae_contig5357:6262..6615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5357.13541.1prot_L-elsbetiae_contig5357.13541.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5357 6293..6615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.820054-UTR-L-elsbetiae_contig5357:6261..62921622816556.820054-UTR-L-elsbetiae_contig5357:6261..6292Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5357 6262..6292 +
1691683645.3719873-UTR-L-elsbetiae_contig5357:6261..62921691683645.3719873-UTR-L-elsbetiae_contig5357:6261..6292Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5357 6262..6292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.8322105-CDS-L-elsbetiae_contig5357:6292..63431622816556.8322105-CDS-L-elsbetiae_contig5357:6292..6343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5357 6293..6343 +
1691683645.3818104-CDS-L-elsbetiae_contig5357:6292..63431691683645.3818104-CDS-L-elsbetiae_contig5357:6292..6343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5357 6293..6343 +
1622816556.8423932-CDS-L-elsbetiae_contig5357:6534..66151622816556.8423932-CDS-L-elsbetiae_contig5357:6534..6615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5357 6535..6615 +
1691683645.3916237-CDS-L-elsbetiae_contig5357:6534..66151691683645.3916237-CDS-L-elsbetiae_contig5357:6534..6615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5357 6535..6615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5357.13541.1

>prot_L-elsbetiae_contig5357.13541.1 ID=prot_L-elsbetiae_contig5357.13541.1|Name=mRNA_L-elsbetiae_contig5357.13541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MQSGRNGQQFTRRRCPRVARLLELGLVLDYRDFPGFRTAFEPAE
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mRNA from alignment at L-elsbetiae_contig5357:6262..6615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5357.13541.1 ID=mRNA_L-elsbetiae_contig5357.13541.1|Name=mRNA_L-elsbetiae_contig5357.13541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig5357:6262..6615+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGTTCGTAGGTCGGCCGGCGATACGTGCGATGCAGTCTGGGCGGAATG
GCCAGCAGTTCACCAGGCGGCGGTGTCCAAGGGTACAGTACTTCTATTCC
GCGTTTTCCCAGCGATTGGGAACCTTTTCATCGTCTTGAAGGGGCTCATC
AAGGTAGGTTAGAACGTTAGAACACGATGCGTTTGCTGTCATCCCATCCA
ATACAAACGCCTAGATAGGTCATGGTCATCGTTTTACTGTGCAGCTCGAT
AACCCCTCGTATATTCTGTTCAGGTTGCCCGTCTACTGGAGCTCGGCCTG
GTTTTAGACTACAGGGATTTTCCCGGATTTCGCACGGCTTTTGAGCCGGC
AGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5357:6262..6615+

>mRNA_L-elsbetiae_contig5357.13541.1 ID=mRNA_L-elsbetiae_contig5357.13541.1|Name=mRNA_L-elsbetiae_contig5357.13541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig5357:6262..6615+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTCTGGGCGGAATGGCCAGCAGTTCACCAGGCGGCGGTGTCCAAG
GATGCAGTCTGGGCGGAATGGCCAGCAGTTCACCAGGCGGCGGTGTCCAA
GGGTTGCCCGTCTACTGGAGCTCGGCCTGGTTTTAGACTACAGGGATTTT
CCCGGATTTCGCACGGCTTTTGAGCCGGCAGAAGTTGCCCGTCTACTGGA
GCTCGGCCTGGTTTTAGACTACAGGGATTTTCCCGGATTTCGCACGGCTT
TTGAGCCGGCAGAA
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