prot_L-elsbetiae_contig5350.13531.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5350.13531.1
Unique Nameprot_L-elsbetiae_contig5350.13531.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length628
Homology
BLAST of mRNA_L-elsbetiae_contig5350.13531.1 vs. uniprot
Match: D7FTS7_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS7_ECTSI)

HSP 1 Score: 405 bits (1042), Expect = 1.360e-126
Identity = 289/491 (58.86%), Postives = 331/491 (67.41%), Query Frame = 0
Query:    1 RTARLHGCEAEFVAAPP---------SANGRGXXXXXXXXXXXXRNSGAVSRAGADKQRQNSQHSASRRQDAGRGGGGVQPAT----------VGAVTAPRNTQS---RRVSIRGPPGLVENARNALVALVLGREESEVSLRARAAAALGEGSWRKIQESSSNVSIISDSSRCSLKVSGPPADVDVCRKELYAMLGAVFRDQFHVVPIPREALHDVANPVDLAAAAXXXX-----APGCG---RSMTAVAETAEVLGPAGAAAAAAGWVGESSVELLADWPCSCVRVRGDAAAVRVAVEAIYAALSRWSALEVTAAVEDWMVPALFGRQGKAIKKLSQSMGGVVLKVSGGVCRGRAASAEAAREATRKLEERVSELRARRAVVRIPPEVASQLKIRGGSSIERLRERARVTIEMENGDGRENAMLEVYISGDPSAVAAAKREVDALTRGVTKGEPAAQPHPEDRNTR--GARTTSAEPSSLPSSTLPSSPG 459
            RT +LHGCEAEFVAAPP         ++ GR XXXXXXXXXXXX       R G  K       S   RQDAG  G GV   T          + AVT    T S   RRV IRG PGLV+ AR+ALVALVLGRE+ EV+L   AAAALG  SWRKIQ+SS  V+I  D SRCSL+VSGPPA V+ CR+ELY ML   FR +F  VPIPREALH+VA P+ LA AA XXX     +P  G   R+  A  + AEVLGP G AAAA GW GE +V+LLADWPCSCVRVRG+AAAV VAV  I  ALS+WSAL V A VE+WM P LFG+Q KAIKKLSQSMGGVVL V  GVC GRAAS E AR+ATRKLEERVSELRARRAVVR+PPEV ++L  RGG SI++++ER R TI +  G G      EV I GDPSAVAAA+REV+A+ RG +K  PAAQ  P+DR +   G    + +PS L    LP SPG
Sbjct:  266 RTVKLHGCEAEFVAAPPPSPPVSSNTASGGRXXXXXXXXXXXXXXXXXXRHRHGPHK-------SGPGRQDAGGRGAGVGATTTADDTHDDGSLSAVTGVSYTSSAPARRVMIRGLPGLVDKARDALVALVLGREDGEVALGEEAAAALGADSWRKIQDSSERVTITPDRSRCSLRVSGPPAAVEACRRELYTMLADAFRGEFVAVPIPREALHEVATPLRLADAAAXXXXXXXSSPRTGDGKRTAAAAGQIAEVLGPMGVAAAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVGEINTALSKWSALAVAAEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVDGVCSGRAASEEEARDATRKLEERVSELRARRAVVRVPPEVVTRLTGRGGCSIDKIKERTRATIRIGEGVGGN----EVIICGDPSAVAAARREVEAMARGPSKSSPAAQA-PKDRQSPDGGVPDAAGDPSPL----LPPSPG 740          
BLAST of mRNA_L-elsbetiae_contig5350.13531.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE)

HSP 1 Score: 380 bits (977), Expect = 1.300e-112
Identity = 286/515 (55.53%), Postives = 329/515 (63.88%), Query Frame = 0
Query:    1 RTARLHGCEAEFVAAPPSA-------NGRGXXXXXXXXXXXXRNSGAVSRAGADKQRQNSQHSASRRQDAGRGGGGVQPAT----------VGAVTAPRNTQS---RRVSIRGPPGLVENARNALVALVLGREESEVSLRARAAAALGEGSWRKIQESSSNVSIISDSSRCSLKVSGPPADVDVCRKELYAMLGAVFRDQFHVVPIPREALHDVANPVDLAAAAXXXX-----APGCG---RSMTAVAETAEVLGPAGAAAAAAGWVGESSVELLADWPCSCVRVRGDAAAVRVAVEAIYAALSRWSALEVTAAVEDWMVPALFGRQGKAIKKLSQSMGGVVLKVSGGVCRGRAASAEAAREATRKLEERVSELRARRAVVRIPPEVASQLKIRGGSSIERLRERARVTIEMENGDGRENAMLEVYISGDPSAVAAAKREVDALTRGVTKGEPAAQPHPEDRNTRGARTTSAEPSSLPSSTLPSSPGVS-RNTAVPPPLQP------RQHASNGA 480
            RT +LHGCE EFVAAPP +           XXXXXXXXXXXX          A++ R     S   RQDAG  G GV   T          + AVT    T S   R V IRG PG V+ AR+ALVALVLG E+ EV+L    AAALG  SWRKIQ+SS  V+I  D SRCSL+VSGPPA V+ CRKELY ML    R +F  VPIPREALH+VA  + LA AAXXXX     +P  G   R+  A  + AEVLGP G A+AA GW GE +V+LLADWPCSCVRVRG+AAAV VAV+ I  ALS WSAL VTA VE+WM P L G+Q KAIKKLSQSMGGVVL V  GVC GRAAS E AR+ATRKLEERV+ELRARRAVVR+PPEV SQL  R G SI++L+ER R TI +E G G +    E  I GDP+AVAAAK EV+A+ RG +K  PA Q  P +R ++      A  +  PS  L  SPG     T  P PL P      +QHA N A
Sbjct:  952 RTVKLHGCEVEFVAAPPPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERHRNGPYKSGPGRQDAGGRGAGVGAITTADDAHDDGSLSAVTGVSYTSSAPARMVMIRGLPGQVDKARDALVALVLGWEDGEVALGEEGAAALGADSWRKIQDSSGRVTITPDKSRCSLRVSGPPAAVEACRKELYTMLADASRGKFVAVPIPREALHEVATSLRLADAAXXXXXXXXSSPKTGDGKRTAAAAGQIAEVLGPTGIASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEINTALSMWSALTVTAEVEEWMEPELLGKQRKAIKKLSQSMGGVVLNVVDGVCCGRAASEEEARDATRKLEERVNELRARRAVVRVPPEVVSQLTGRRGCSIDKLKERTRATICIEEGVGGK----EFIICGDPAAVAAAKLEVEAMARGPSKSGPATQA-PNNRQSQDGSVPDA--AGDPSPLLSPSPGEGVPQTGTPSPLPPSRQNQNQQHAGNTA 1459          
BLAST of mRNA_L-elsbetiae_contig5350.13531.1 vs. uniprot
Match: D8LHP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.410e-19
Identity = 101/295 (34.24%), Postives = 147/295 (49.83%), Query Frame = 0
Query:   62 DAGRGGGGVQPAT-VGAVTAPRNTQSRRVSIRGPPGLVENARNALVALVLGREESEVSLRARAAAALGEGSWRKIQE--SSSNVSIISDSSRCSLKVSGPPADVDVCRKELYAMLGAVFRDQFHVVPIPREALHDVANPVDLAAAAXXXXAPGCGRSMTAVAETAEVLGPAGAAAAAAGWVGESSVELLADWPCSCVRVRGDAAAVRVAVEAIYAALSRWSALEVTAAVEDWMVPALFGRQGKAIKKLSQSMGGVVL-KVSGGVCRGRAASAEAAREATR--KLEERVSELRARR 350
            + GRGG G    + + AV +      + + I GP G+V  A++A+ +LV G   +EV +          G W   +        S+  D  R  + V G P +V+  RKE    L ++F   F  VP+PR AL D+A+   L  AA          S   V +  +   P G   A         VEL ADWP SCVR+RG+ A VR A +A+YAAL+ W+ LEV+  V+  +V  L  R G+ +  +S +MG  +L +   GV RGRA + + A+EA R  KL+ +V+ L  RR
Sbjct:  277 EGGRGGAGADAISPLQAVGSATPVGHQDILIWGPAGVVGEAKDAVCSLVSGSASAEVVVGVGRIGRRDRGFWVNCETMPGGGGASLEVDHKRGVVVVRGLPEEVEEGRKEFQDKLASLFPGDFLAVPMPRAALKDLADAQGLTRAA----------SQAGVVDGRDER-PDGCDEA-------GGVELWADWPFSCVRLRGEPATVRRAAKALYAALAVWNTLEVSVTVDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRARNEDEAKEANRVLKLKLKVAALAQRR 553          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5350.13531.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTS7_ECTSI1.360e-12658.86KH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L0D2_9PHAE1.300e-11255.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHP8_ECTSI1.410e-1934.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 329..349
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 348..413
score: 10.106
IPR004087K Homology domainSMARTSM00322kh_6coord: 347..418
e-value: 5.9E-5
score: 32.5
coord: 279..344
e-value: 2.2
score: 12.6
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 353..413
e-value: 3.1E-5
score: 23.7
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 334..423
e-value: 1.8E-7
score: 32.8
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 351..423

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5350contigL-elsbetiae_contig5350:4643..8883 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5350.13531.1mRNA_L-elsbetiae_contig5350.13531.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5350 4643..8885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5350.13531.1 ID=prot_L-elsbetiae_contig5350.13531.1|Name=mRNA_L-elsbetiae_contig5350.13531.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=628bp
RTARLHGCEAEFVAAPPSANGRGGGGGGESGANGGRNSGAVSRAGADKQR
QNSQHSASRRQDAGRGGGGVQPATVGAVTAPRNTQSRRVSIRGPPGLVEN
ARNALVALVLGREESEVSLRARAAAALGEGSWRKIQESSSNVSIISDSSR
CSLKVSGPPADVDVCRKELYAMLGAVFRDQFHVVPIPREALHDVANPVDL
AAAAAAAAAPGCGRSMTAVAETAEVLGPAGAAAAAAGWVGESSVELLADW
PCSCVRVRGDAAAVRVAVEAIYAALSRWSALEVTAAVEDWMVPALFGRQG
KAIKKLSQSMGGVVLKVSGGVCRGRAASAEAAREATRKLEERVSELRARR
AVVRIPPEVASQLKIRGGSSIERLRERARVTIEMENGDGRENAMLEVYIS
GDPSAVAAAKREVDALTRGVTKGEPAAQPHPEDRNTRGARTTSAEPSSLP
SSTLPSSPGVSRNTAVPPPLQPRQHASNGATAYAADDAARQPAFEAAATT
TTTKEKAAGVTMAANTKAGGERSFAEEQERIAQQPPLLPPPPPQSTTVPS
AAGDSRAVRQRPGPSIAPSPGRSSPRDAPCTGSSSAKVEHICFGSFETQA
DDRAGSSGSKSRTGRREPAGFGTAQNNA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR036612KH_dom_type_1_sf