mRNA_L-elsbetiae_contig5341.13522.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5341.13522.1
Unique NamemRNA_L-elsbetiae_contig5341.13522.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5341.13522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5341contigL-elsbetiae_contig5341:7833..10544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5341.13522.1prot_L-elsbetiae_contig5341.13522.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5341 7833..10544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.9732873-CDS-L-elsbetiae_contig5341:7832..78971622816554.9732873-CDS-L-elsbetiae_contig5341:7832..7897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5341 7833..7897 +
1691683644.047544-CDS-L-elsbetiae_contig5341:7832..78971691683644.047544-CDS-L-elsbetiae_contig5341:7832..7897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5341 7833..7897 +
1622816554.9862354-CDS-L-elsbetiae_contig5341:9040..91321622816554.9862354-CDS-L-elsbetiae_contig5341:9040..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5341 9041..9132 +
1691683644.0607905-CDS-L-elsbetiae_contig5341:9040..91321691683644.0607905-CDS-L-elsbetiae_contig5341:9040..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5341 9041..9132 +
1622816554.9977953-CDS-L-elsbetiae_contig5341:10428..105441622816554.9977953-CDS-L-elsbetiae_contig5341:10428..10544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5341 10429..10544 +
1691683644.0708132-CDS-L-elsbetiae_contig5341:10428..105441691683644.0708132-CDS-L-elsbetiae_contig5341:10428..10544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5341 10429..10544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5341.13522.1

>prot_L-elsbetiae_contig5341.13522.1 ID=prot_L-elsbetiae_contig5341.13522.1|Name=mRNA_L-elsbetiae_contig5341.13522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
KAEDAVRTVLQGRTSSLLGRCRRSTIFSWIWQSCLRWATCTAPPPGYYTP
SQARRSLGLLSRGATRLRRKQGSPRHRDVSGSKSTLTSLAG
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mRNA from alignment at L-elsbetiae_contig5341:7833..10544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5341.13522.1 ID=mRNA_L-elsbetiae_contig5341.13522.1|Name=mRNA_L-elsbetiae_contig5341.13522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2712bp|location=Sequence derived from alignment at L-elsbetiae_contig5341:7833..10544+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCCGAAGACGCAGTCAGGACAGTTCTTCAGGGTCGTACGAGTTCCCT
TCTGGGGCGGTGCAGGTGCGTTCTTCGAGCAAGCCGACATCCTTTGTTTT
CTTGTCGCGTTGTCGGAAGGGGTGAGTGGGCAGGCGGAATGGCAGGCGGG
GGTGTGTGAGCATGCCGACTGCAGTTAATAGGAGAAGGAAGCAGGCAAAC
AAACCTCTAGATCGGCAGCGATATCGACATTTGACGCCGCCACATACCGT
AAAAGTGCGTGAGTTCGCACAGGGTCGATAAGATCACACCCCTGTGCGAT
AAAAATGCCAGTTTGAAATGGTTTAATTAGATTTTCGCGCAGGGGTGCGA
ACTCACGTACAAAAAATAAACGAAACGCCACTCCGGGCGTGTGGTTCACG
GGGCGGACACGACGGAGTCTGTGTTCGTATCACAGAGCTCCACTGCCCGC
GTATTGCAGTGTGGCAGTGTGCACACATGAAAATGGGAGTTGCCGCAACT
TGGTACCTAGTACCTTCTCACACGTACCCCTTCCTAGACACGGACCAGTA
GTGAGCAAGCTCGCCGATCTTCGGCCTCTGCACATTCACAACCAAACTCT
CGCATTCTGTGCGCCGGTACCCTAAATATACTTATCCTCTCTTGCCTCTA
TCAAAGTCTACCGGCCGTACACAACGAACGCGGGGGTACTGCTGTAGTAT
TCTATATCGGTTGCAACTACCGAGACTTCAAGCTCGTCGCCTACTGTACC
CCCAACTTCCGGGCCGGCCCATCCATGAGCTCAATATCGCTGTCGTGCTC
CAACAGCTCTACATTGCTGTCGCTTTGATGTGATTTAGTCAGGATCGCAC
ATGTCGGAGATATCACACGAGGGTGTGCGCTAGAGGAGCAGAACCAAAGA
TTTAAACAGGTTTCCGCGCAGGGGTCGCTAAGTTCGCACAGGGTCGGCGA
GTTCGCACACATGTGCGATAAAAATAACCGTTTGATATGATTCAAAGATC
GATCGCACCCCTGTGCGAACTCACGCACTTTTACGGTATCATCTCATCTC
GCCAGCACGATACCCAAACCCTATATATCCCGCCGCCTATGGTCCTTGAT
GGCCTCGCCCCACTGTCTGAGTTTCCCTGTATCGCCGCGGCCACACTCGG
ATCCGACCCGACCCGGAACTCAGTCCGGTCCTGCCCATCCCCCGACGATA
CCTCGCAGGCGATCGACGATATTTTCATGGATCTGGCAAAGCTGCCTACG
TTGGGCAACTTGCACGGCGCCCCCGCCAGGCTATTATACCCCATCACAAG
GTGAAAAACACGGCAAACTAGTTTTTAAATGACAAATTTCTGAGTTTTGT
TGAATCGAGTGGCGATTTTTATGCACCCATTTCGGACTACGTTACCTTCG
TTGTACTAGGAGTTGCGTATCTCGGGGGTGTGCTGCTACGGGGAGACAAA
GAGACGTGGTTTGATTACGCGAGAATACGTGTATCTTGCTCAAGATTGGC
AGGCCCATAAGGTGGAAGCGGGATGTATCTGCTAGCTTCTAGTAAAACCG
CGAGGCAAGCATGGAGGACAATTCAAACACTCAGGGCACATTAAACAGCC
CTGTGCGGTAAACGTCGCCACCATCAGCCCCCTCGTGTCATCACCTTTTC
CATTAGGAAGTGGTGCTGTCGGTTGACTTTGGGCAGAGCTGTTGGTAGGA
TCTTCTCCGACTCTCACGTTTCAGTGCAGTTAGTTTCGTCGCGGACGGAA
CTGCCCGCGTCGTCCTCTAATTGGTGCTAGTAACGGCTTGTCGCGGACTG
GAAATCCCACTCATAAAAGGATGTACCTTTTTTCTAGGCGTTCGAAATCC
GAGGGAATTGGGGGGAGAATCAACAGGAGAGGGCCCGAACCGACACCTGG
CGGTGTTTTGCTGTCATACCCCACGTAGATCTCTCTCCAGCTGTCTTTTC
GCACCGAAAAATCGGCGGCTGTGCGTTCAAACGACAGTGTTTCTTAAGAT
GACCGAGCCAATGCGTGGGGTTGGCTATCTTCAGGTAGGTAGAGCTGTTG
CTAACAGAGCAGAGACGGGATCTTCGGCTTAGTGCCTCTTATCAGACCCT
CGAAGGAACATAGTCGGAGCACAGCAACATCCGTGCACACGGTGACGTTC
GATCTGGAGAACTAGGTGTGTTGAAATCTCTTCAAAATACGCCCTATTTT
ATCTCGATCTGGTCGGGCTTTGCTTCACGAAACAAAACTCACACGCCGTG
AGAAAATAACAGACACGCGAAGATACCCAAGAAACTTCCCTTCAAGATAA
AGGTGTAAGACAGGACAGCGGAACGGGCTGCCCCCCCGCCCAGAAATGAC
GATGCCGAACACATGTCTTTTTTGTACTGATTTCGAAGAAAATACACTTA
GAACCAGCAATCCATTCCCCGCCACGTGGTACAGCCTTACATATACCCCC
GTTATCTGCGGCTCGACGTGCTCGTTTTAATCCTTCCCTCCCCCGTCCGT
CCGTGCCTGACTATTTACTTTTATATTTACCCCCCTATTTGCCCCTTCCT
CTGTACCTGCTTCCCTACCTGCTCCTCTGATCACGTGCGTCGTTAGCGCG
GAGGTCACTAGGCCTCCTTTCCCGAGGGGCGACGCGACTGAGAAGAAAAC
AAGGGTCGCCTCGCCACCGAGATGTGTCAGGTTCTAAGAGCACCCTCACC
AGCCTAGCCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5341:7833..10544+

>mRNA_L-elsbetiae_contig5341.13522.1 ID=mRNA_L-elsbetiae_contig5341.13522.1|Name=mRNA_L-elsbetiae_contig5341.13522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig5341:7833..10544+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCCGAAGACGCAGTCAGGACAGTTCTTCAGGGTCGTACGAGTTCCCT
TCTGGGGCGGTGCAGAAGGCCGAAGACGCAGTCAGGACAGTTCTTCAGGG
TCGTACGAGTTCCCTTCTGGGGCGGTGCAGGCGATCGACGATATTTTCAT
GGATCTGGCAAAGCTGCCTACGTTGGGCAACTTGCACGGCGCCCCCGCCA
GGCTATTATACCCCATCACAAGGCGATCGACGATATTTTCATGGATCTGG
CAAAGCTGCCTACGTTGGGCAACTTGCACGGCGCCCCCGCCAGGCTATTA
TACCCCATCACAAGCGCGGAGGTCACTAGGCCTCCTTTCCCGAGGGGCGA
CGCGACTGAGAAGAAAACAAGGGTCGCCTCGCCACCGAGATGTGTCAGGT
TCTAAGAGCACCCTCACCAGCCTAGCCGGACGCGGAGGTCACTAGGCCTC
CTTTCCCGAGGGGCGACGCGACTGAGAAGAAAACAAGGGTCGCCTCGCCA
CCGAGATGTGTCAGGTTCTAAGAGCACCCTCACCAGCCTAGCCGGA
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