mRNA_L-elsbetiae_contig5340.13521.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5340.13521.1
Unique NamemRNA_L-elsbetiae_contig5340.13521.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: D8LKB4_ECTSI (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB4_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 5.490e-59
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAPGPA 309
            PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGA GPA
Sbjct:   11 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAAGPA 113          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A6V1RK43_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RK43_HETAK)

HSP 1 Score: 132 bits (333), Expect = 2.150e-35
Identity = 62/81 (76.54%), Postives = 75/81 (92.59%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLD 243
            PPQAC+QR++K+VLPDN+QIGKDAKAAF+R+AGIFIMYLTACANDFCRE+KRQTI+  DVM AI ELEF +L EPLK++L+
Sbjct:   38 PPQACIQRIVKAVLPDNIQIGKDAKAAFARAAGIFIMYLTACANDFCRESKRQTITGPDVMMAISELEFHDLVEPLKDFLE 118          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A7S2SN07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN07_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.230e-33
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAA 288
            PPQACVQR+IKS LPDN QI K++KAAFS++AGIFI+YLT CANDFC+E KR TIS+ DVM A++ELEF +L  PL+E+L  YR++AS KK   AA
Sbjct:   73 PPQACVQRIIKSALPDNCQITKESKAAFSKAAGIFIIYLTTCANDFCKENKRSTISSADVMSAMRELEFHDLMGPLEEFLTNYRKDASTKKDGVAA 168          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A7S2DWQ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWQ9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 8.380e-30
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQ 276
            PP ACVQR+IK VLPD+ QI K++K AFS++AGIFI+YLT CANDFC+E KR TIS+ DV+ A++ELEF +L  PL+E+L  YR++ +AKK+
Sbjct:   26 PPMACVQRIIKGVLPDSCQITKESKTAFSKAAGIFIIYLTTCANDFCKEGKRSTISSADVLAALRELEFHDLIGPLEEFLAHYRQDTNAKKE 117          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A7S3HH50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH50_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.020e-27
Identity = 52/91 (57.14%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKK 273
            PP ACV RV+K+ LP+N+ + KDA+AAF R+AGIFI YLT C+NDFCRE+KR TI  QDVM A++EL F + E+PL+E+L+ Y++++  +K
Sbjct:   18 PPMACVSRVMKAALPENILLTKDARAAFVRAAGIFIFYLTHCSNDFCRESKRATIFPQDVMAALRELGFEDFEKPLEEFLEAYKKDSEQRK 108          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A7S2WSI8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WSI8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.720e-27
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMG 294
            PP ACV+R++KS LP +  +GKDA +AF+R+ GIF++YLTACANDF RE KRQTI+A D+M +IKEL+F E    L  +L+Q+R+E   K++ K A G
Sbjct:   35 PPLACVRRLLKSSLPTSTNVGKDASSAFARACGIFVIYLTACANDFARENKRQTITANDIMASIKELDFDEFTPQLTGFLEQHRKEEKEKRERKKASG 132          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A1E7FAU9_9STRA (CBFD_NFYB_HMF domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAU9_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.720e-26
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    4 PQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKA 285
            P ACV+R++K  LP +  +GKDA AAF+R++GIFI+YLTACANDF RE +RQTI+A DV+ AIKELEF E    L  +L+ YR     KK  KA
Sbjct:    1 PVACVRRILKKTLPSSSNVGKDAVAAFARASGIFIIYLTACANDFARENRRQTITANDVLAAIKELEFDEFSPELTSFLEGYREAEKNKKDVKA 94          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A7S1UNS2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNS2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.860e-26
Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAA 288
            PP AC++R++K  LP +  +GKDA AAF+R+ GIF++Y+TACANDF  E +RQTI+A DV+ A+KEL+F E    LK +L+ YR    +K+++KAA
Sbjct:   22 PPLACIRRILKHALPSSTNVGKDASAAFARACGIFVIYITACANDFAHENRRQTITANDVLAALKELDFDEFTPQLKTFLENYRAAEKSKREAKAA 117          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A6U9ZNZ1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9ZNZ1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.200e-26
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAA 288
            PP ACV+R++K  LP +  +GKDA AAF+R++GIFI+YLTACANDF RE +RQTI+A DV+ AIKELEF E    L  +L++YR     KK +KAA
Sbjct:   47 PPVACVRRILKQTLPSSSNVGKDAVAAFARASGIFIIYLTACANDFARENRRQTITANDVLAAIKELEFDEFAPELSTFLERYRELEKNKKDAKAA 142          
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Match: A0A7S1D791_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D791_CYCTE)

HSP 1 Score: 108 bits (271), Expect = 8.580e-26
Identity = 49/95 (51.58%), Postives = 74/95 (77.89%), Query Frame = 1
Query:    1 PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKA 285
            PP ACV+R++K+ LP +  +GKDA AAF+R+ GIF++Y+TACANDF RE++RQTI+A DV+ ++KEL+F E    L+ +LD++R    +K+ +KA
Sbjct:   34 PPLACVRRILKNALPSSTNVGKDASAAFARACGIFVIYITACANDFARESRRQTITANDVLASVKELDFDEFSPHLEAFLDRHRAAEKSKRDAKA 128          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5340.13521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKB4_ECTSI5.490e-5999.03CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
A0A6V1RK43_HETAK2.150e-3576.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SN07_9STRA3.230e-3366.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DWQ9_9STRA8.380e-3061.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3HH50_9STRA1.020e-2757.14Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2WSI8_9STRA8.720e-2755.10Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7FAU9_9STRA4.720e-2657.45CBFD_NFYB_HMF domain-containing protein (Fragment)... [more]
A0A7S1UNS2_9STRA4.860e-2652.08Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U9ZNZ1_9STRA6.200e-2658.33Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1D791_CYCTE8.580e-2651.58Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5340contigL-elsbetiae_contig5340:10426..12150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.1
Seed ortholog evalue2.2e-48
Seed eggNOG ortholog2880.D8LKB4
Preferred namePOLE3
KEGG rclassRC02795
KEGG koko:K02326
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000123,GO:0000228,GO:0000278,GO:0000731,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005671,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006272,GO:0006281,GO:0006301,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008622,GO:0008623,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019985,GO:0022402,GO:0022607,GO:0022616,GO:0031010,GO:0031055,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032502,GO:0032991,GO:0033260,GO:0033554,GO:0034061,GO:0034080,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0036211,GO:0040029,GO:0042276,GO:0042575,GO:0042766,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043596,GO:0043933,GO:0043966,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0061641,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070603,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090399,GO:0097159,GO:0097549,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902292,GO:1902315,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsKOG0870@1,KOG0870@2759
EC2.7.7.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Ec32 ortholog descriptionDPB4 class protein with histone-like transcription factor (NF-YB subunit) domain
Ec32 orthologEc-01_009630.1
Exons4
Model size696
Cds size696
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5340.13521.1prot_L-elsbetiae_contig5340.13521.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5340 10426..12150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.9060683-CDS-L-elsbetiae_contig5340:10425..105811622816554.9060683-CDS-L-elsbetiae_contig5340:10425..10581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 10426..10581 -
1691683644.0021458-CDS-L-elsbetiae_contig5340:10425..105811691683644.0021458-CDS-L-elsbetiae_contig5340:10425..10581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 10426..10581 -
1622816554.9160903-CDS-L-elsbetiae_contig5340:10680..109741622816554.9160903-CDS-L-elsbetiae_contig5340:10680..10974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 10681..10974 -
1691683644.0180938-CDS-L-elsbetiae_contig5340:10680..109741691683644.0180938-CDS-L-elsbetiae_contig5340:10680..10974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 10681..10974 -
1622816554.9294164-CDS-L-elsbetiae_contig5340:11668..118041622816554.9294164-CDS-L-elsbetiae_contig5340:11668..11804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 11669..11804 -
1691683644.0276606-CDS-L-elsbetiae_contig5340:11668..118041691683644.0276606-CDS-L-elsbetiae_contig5340:11668..11804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 11669..11804 -
1622816554.9395947-CDS-L-elsbetiae_contig5340:12040..121501622816554.9395947-CDS-L-elsbetiae_contig5340:12040..12150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 12041..12150 -
1691683644.0377111-CDS-L-elsbetiae_contig5340:12040..121501691683644.0377111-CDS-L-elsbetiae_contig5340:12040..12150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 12041..12150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5340.13521.1

>prot_L-elsbetiae_contig5340.13521.1 ID=prot_L-elsbetiae_contig5340.13521.1|Name=mRNA_L-elsbetiae_contig5340.13521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
PPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREA
KRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAP
GPAAAKKEETGGDMMEEPDADDGEAAEGVVGGDDTAGGREGRIGSTASTA
ATSAAAQQQPAGAQGSVAVAAAAAATTDMSHQHQHPQHPPPQQQQPLQQQ
PPAGPVPMDEDGTAPAPLPAAVAGAGDSVIG*
back to top

mRNA from alignment at L-elsbetiae_contig5340:10426..12150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5340.13521.1 ID=mRNA_L-elsbetiae_contig5340.13521.1|Name=mRNA_L-elsbetiae_contig5340.13521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1725bp|location=Sequence derived from alignment at L-elsbetiae_contig5340:10426..12150- (Laminarionema elsbetiae ELsaHSoW15)
CCTCCCCAGGCATGTGTGCAGCGAGTGATCAAGTCCGTTCTCCCGGACAA CGTCCAGATCGGAAAGGATGCCAAGGCAGCTTTCTCGCGGAGCGCCGGCA TCTTCATCATGTGGGTAGATTCCGTCAAGCGTCCATGATTTCGCGACTGC TGTGTTCCAGTAAGGAGAGGACGGCTGTGAGGCCAGGCGATGTTTTCCCT GCTTTTATACTCCCCCGTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCCGGCAGTAAAGCTGTGCCTGTGCTGTGTT GTCTAGTTCGCGAGAGGTTTTGACGCGAAGTTCGTGTGCGTGACAGGTAC CTCACGGCATGTGCGAACGACTTTTGCCGAGAAGCGAAACGGCAAACGAT CAGCGCCCAGGACGTGATGCAAGCAATCAAGGAGTTAGAATTTGGGGAGC TGGAGGAGCCGCTCAAGGAGTACCTTGATCAGGTGTGACTGATGTTCACG TGCGCCTATTTGGATCGGAACGGTAGCTAGCTCACCAAGCTAATTTGAAT CTTGTTATAGAGCAGTGGCGTTTTTGTGCCAATCTCTACGTGTGCATCGA AGCACGAGCCCGGGTTTCTGTTACAACAGCATGTTGTCGTGTAGGGCGGC CATGACGTCCTTGAGGGTTAGTCCGTGCCGGTCGTCCTGGTGGTCTGTTT GGTATCCCCGAACACCTTCTAGCAGGCAGGTCAAGGGTTCGAAACCCGGC GGGAGCGACTTTTTCCTGCAAAGTTAGTTTTTTCTCTCGCTTCCACCCCT GTCAGCGAAGAACGCTTAGCGTGTACACACAAACTTCGACCTCACCGTCG GCGAGGGAAAGGGACGGCTGAACCCTTCTCGCGACAAAAAAACTTAGGCC GTAGAAGGGGGGAGTGGGGGCCTCGGGGAAAGGAATCCTTCTGTGTGACA ACGGTTCAGTACCCTGGCAAGATGCCCTCGTGACAAAGAGCCCATCGAGC ACTGGAAATAAATGTGAAAATTGAAATAAATGTGAAAATTGATAAAAAAT AAAATAATCCCGCAGAAGGGCTGCATGTACCTCAACGACAGCGGCGATTC TCAACACAAGGTGTTGGCCGGCATGCATCGGCGCCCCCCCCCCCCCCCCC TCCCGCCCGCCCTCCTCAAAATAAAGTACCGTCGTGAGGCCAGCGCCAAG AAACAGAGCAAGGCAGCAATGGGAGCCCCCGGGCCAGCCGCAGCGAAGAA GGAAGAGACGGGCGGCGACATGATGGAGGAGCCAGACGCCGACGACGGAG AGGCAGCAGAGGGCGTTGTTGGCGGTGACGACACGGCAGGAGGCAGGGAA GGGAGAATCGGCTCGACTGCCTCTACCGCCGCCACCTCCGCCGCTGCTCA ACAACAACCGGCAGGTGCGCAGGGGAGCGTGGCGGTAGCGGCTGCGGCTG CGGCCACGACCGATATGAGCGTTGACCGGCGGGAACCGGCCGAAACGCCG CCACAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGTACCCGCAGCACCAACACCAGCACCCGCAGCACCCGCCGC CGCAGCAGCAGCAGCCGCTGCAGCAGCAGCCTCCGGCGGGGCCGGTTCCA ATGGATGAGGACGGGACGGCGCCGGCACCTTTACCCGCTGCGGTGGCCGG TGCGGGCGATAGTGTTATAGGCTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5340:10426..12150-

>mRNA_L-elsbetiae_contig5340.13521.1 ID=mRNA_L-elsbetiae_contig5340.13521.1|Name=mRNA_L-elsbetiae_contig5340.13521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig5340:10426..12150- (Laminarionema elsbetiae ELsaHSoW15)
CCTCCCCAGGCATGTGTGCAGCGAGTGATCAAGTCCGTTCTCCCGGACAA
CGTCCAGATCGGAAAGGATGCCAAGGCAGCTTTCTCGCGGAGCGCCGGCA
TCTTCATCATCCTCCCCAGGCATGTGTGCAGCGAGTGATCAAGTCCGTTC
TCCCGGACAACGTCCAGATCGGAAAGGATGCCAAGGCAGCTTTCTCGCGG
AGCGCCGGCATCTTCATCATGTACCTCACGGCATGTGCGAACGACTTTTG
CCGAGAAGCGAAACGGCAAACGATCAGCGCCCAGGACGTGATGCAAGCAA
TCAAGGAGTTAGAATTTGGGGAGCTGGAGGAGCCGCTCAAGGAGTACCTT
GATCAGGTACCTCACGGCATGTGCGAACGACTTTTGCCGAGAAGCGAAAC
GGCAAACGATCAGCGCCCAGGACGTGATGCAAGCAATCAAGGAGTTAGAA
TTTGGGGAGCTGGAGGAGCCGCTCAAGGAGTACCTTGATCAGTACCGTCG
TGAGGCCAGCGCCAAGAAACAGAGCAAGGCAGCAATGGGAGCCCCCGGGC
CAGCCGCAGCGAAGAAGGAAGAGACGGGCGGCGACATGATGGAGGAGCCA
GACGCCGACGACGGAGAGGCAGCAGAGGGCGTTGTTGGCGGTGACGACAC
GGCAGGAGGCAGGGAAGGGAGAATCGGCTCGACTGCCTCTACCGCCGCCA
CCTCCGCCGCTGCTCAACAACAACCGGCAGGTGCGCAGGGGAGCGTGGCG
GTAGCGGCTGCGGCTGCGGCCACGACCGATATGAGCTACCGTCGTGAGGC
CAGCGCCAAGAAACAGAGCAAGGCAGCAATGGGAGCCCCCGGGCCAGCCG
CAGCGAAGAAGGAAGAGACGGGCGGCGACATGATGGAGGAGCCAGACGCC
GACGACGGAGAGGCAGCAGAGGGCGTTGTTGGCGGTGACGACACGGCAGG
AGGCAGGGAAGGGAGAATCGGCTCGACTGCCTCTACCGCCGCCACCTCCG
CCGCTGCTCAACAACAACCGGCAGGTGCGCAGGGGAGCGTGGCGGTAGCG
GCTGCGGCTGCGGCCACGACCGATATGAGCCACCAACACCAGCACCCGCA
GCACCCGCCGCCGCAGCAGCAGCAGCCGCTGCAGCAGCAGCCTCCGGCGG
GGCCGGTTCCAATGGATGAGGACGGGACGGCGCCGGCACCTTTACCCGCT
GCGGTGGCCGGTGCGGGCGATAGTGTTATAGGCTAGCACCAACACCAGCA
CCCGCAGCACCCGCCGCCGCAGCAGCAGCAGCCGCTGCAGCAGCAGCCTC
CGGCGGGGCCGGTTCCAATGGATGAGGACGGGACGGCGCCGGCACCTTTA
CCCGCTGCGGTGGCCGGTGCGGGCGATAGTGTTATAGGCTAG
back to top