prot_L-elsbetiae_contig534.13517.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig534.13517.1
Unique Nameprot_L-elsbetiae_contig534.13517.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length101
Homology
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BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Match: D7G393_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G393_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 8.080e-33
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 0 
Query:    2 SRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYTLNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRS 86
            SR D +RART VYNIV+D+LSSRK+ RWQEAF LLETMQERGVT D+YTLNS LKACGS+GQV+LLLALLRE+RSS+R  DDS S
Sbjct:  127 SRDDGERARTRVYNIVMDILSSRKSSRWQEAFLLLETMQERGVTTDLYTLNSTLKACGSAGQVKLLLALLREMRSSSRSNDDSGS 211
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BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.540e-31
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 0 
Query:    2 SRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYTLNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRS 86
            SR D +RART VYNIV+D+LSSR + RWQEAF LLETMQERGVT D+YTLNS LKACGS+GQVELLLALL E+RSS+R  DDS S
Sbjct:  219 SRDDGERARTRVYNIVMDILSSRNSSRWQEAFMLLETMQERGVTTDLYTLNSALKACGSAGQVELLLALLTEMRSSSRSNDDSGS 303
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13517.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G393_ECTSI8.080e-3377.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYW8_9PHAE2.540e-3176.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..97
e-value: 1.6E-14
score: 56.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 14..47
e-value: 6.1E-4
score: 17.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 11..58
e-value: 9.0E-11
score: 41.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 47..81
score: 8.057
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 10..46
score: 9.219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig534contigL-elsbetiae_contig534:30269..34370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig534.13517.1mRNA_L-elsbetiae_contig534.13517.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig534 30269..34371 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig534.13517.1 ID=prot_L-elsbetiae_contig534.13517.1|Name=mRNA_L-elsbetiae_contig534.13517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
TSRGDADRARTMVYNIVLDLLSSRKNRRWQEAFSLLETMQERGVTADMYT
LNSVLKACGSSGQVELLLALLREVRSSNRGTDDSRSSGSNGSSSGSRSGD
G
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat