Homology
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
A0A6H5L8T9_9PHAE (Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8T9_9PHAE)
HSP 1 Score: 317 bits (813), Expect = 2.270e-102
Identity = 179/250 (71.60%), Postives = 194/250 (77.60%), Query Frame = 3
Query: 27 ESKMMATEE---AGWD-----EGEEPLNGRAAGAVATKAGRGPPPP-QKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGEFSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLFSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHVFSFLLLTVV 749
E KMMAT E AGWD G+ L PPPP KISMCGLLS+Q+YQPYFDV+TSEVK +LLQA WP+RKT+S FL EG+SS+ DLYGPVWV ATLIFL+SVA NARR MT DAS GEF +VSTSAY VLAYLA+G+ GLWAFFR H VPLS +EALSVYGYSLTPFLAAAPLCL SWPFRS GLA ASL+AAIFVLRSSWPRL EHMPEKS LLL AVATYHV FLLLTVV
Sbjct: 46 ELKMMATVERDPAGWDPEDSQSGQNLLGKNGGXXXXXXXXXXPPPPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTAS-FLGEGDSSK-VDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFDDVSTSAYSVLAYLAIGTGGLWAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLLTVV 293
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
M4B6U3_HYAAE (Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6U3_HYAAE)
HSP 1 Score: 95.1 bits (235), Expect = 2.630e-18
Identity = 74/215 (34.42%), Postives = 114/215 (53.02%), Query Frame = 3
Query: 108 ATKAGRGPPPPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARR----GMTSDASAGEFSEVSTSAYCVLAYLAVGSAGL-WAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCL-----FSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
AT G P + +S+CG S+ FYQPYFDV+TS+V++RL+QA P+++ F E S D YGP+W+S TLIF ++ +N G D A +FS ++ SAY ++ +G L W + VP++ + +YGYS F+ AA LC+ W LAMA L F+L + W + EH+ ++ +LA ++ H+
Sbjct: 50 ATFGGDSKQPGRPVSLCGCFSLSFYQPYFDVDTSDVQLRLMQALLPLKR-EPVFAELAVKSP--DAYGPLWLSTTLIFCLASCSNVASFLDYGGNRDEWAYDFSRLA-SAYTLVEIFLLGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCISPIDAMDWVVML--LAMAWSL--FFLLNNLWRVISEHLTKEKMLPVLAVISGTHM 256
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
A0A8J2SR10_9STRA (Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SR10_9STRA)
HSP 1 Score: 94.0 bits (232), Expect = 2.870e-18
Identity = 79/244 (32.38%), Postives = 117/244 (47.95%), Query Frame = 3
Query: 36 MMATEEAGWDEGEEPLNGRAAGAVATKAGRGPPPPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASA---GEFSEVSTSAYCVLAYLAVGSAGLWAFF----RAHDVPLSSSEALSVYGYSLTPFLAAAPLCLF---SWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHVFSFLL 737
M ++ G + E+ L G+ AG A C LSV +Y+PYFDV+T EV RL A + + + L + D YGP WV+ TL+F ++V ++ R + ++A +FS V+ +A + Y+A+ +A WAF + H PL+ L V GYSL P+LAAAP C +WP + A SL F L+++ P + H EK A A +FLL
Sbjct: 1 MRDEDDHGGPDDEDGLLGQNAGGAAP------------GYCACLSVAYYRPYFDVDTDEVAARLRAALFFCNEPFGATLRG-----KPDAYGPWWVATTLVFAVAVTSHVRGLLGAEAGVIYEFDFSAVTFAAATIYGYVALAAATNWAFLNYSLKVHQRPLA---CLCVVGYSLVPYLAAAPACALPYLAWPAVLAACAAQSL----FALKAARPAVEPHPREKVLAFAGATCALNAGLAFLL 220
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
A0A8K1CS43_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS43_PYTOL)
HSP 1 Score: 93.2 bits (230), Expect = 1.300e-17
Identity = 64/197 (32.49%), Postives = 105/197 (53.30%), Query Frame = 3
Query: 147 ISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGE----FSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLFSWPFRSSGLAMASLLAAI-FVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
+ MC S+ FYQPYFDV+TS+V+ RL++A P +K S SF E ++ D YGPVW+S TLIF ++ +N + + E FS V+++ V +L LW + ++P+ S + +YGYS T F+ A +C+ + + S+ ++ FVL + W + EH+ ++ LL +A H+
Sbjct: 66 MGMCSCFSLAFYQPYFDVDTSDVQERLVRALLPFKK-SPSFNEL--VTKAPDAYGPVWLSTTLIFCLASCSNVASYLDFEGDRKEWSYDFSRVASACTIVEIFLVALPVLLWLVGKYVNIPMRLSSLVCLYGYSTTIFIPATFICIAPIDAVDWVVILLSMSWSLYFVLANLWTAITEHLSKEKMLPLLGFIAASHL 259
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
A0A0P1A6N6_PLAHL (Protein YIPF n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6N6_PLAHL)
HSP 1 Score: 89.7 bits (221), Expect = 1.810e-16
Identity = 63/205 (30.73%), Postives = 107/205 (52.20%), Query Frame = 3
Query: 135 PPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGEFS---EVSTSAYCVLAYLAVG-SAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCL-----FSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
P + +CG ++ FYQPYFDV+TS+V+ R+++A P +K +F E + Q D YGP W+S+TLIF ++ +NA M + +A E+S SAY ++ +G +W + VP++ + +YGYS F+ AA LC+ W + A + F+L + W + EH+ ++ +LA ++ H+
Sbjct: 55 PARPPGLCGCFTLSFYQPYFDVDTSDVQQRIVRALLPFKK-EPAFAEL--ALQSPDAYGPFWLSSTLIFCLASCSNAASFMDYEGNADEWSYDFSRLASAYTLVEIFLLGLPISIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCIAPVDAVDWVV----MLFAMTWSLFFLLTNLWHVISEHLTKEKMLPVLAVISGAHM 252
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
A0A1V9ZA87_9STRA (Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZA87_9STRA)
HSP 1 Score: 89.4 bits (220), Expect = 2.410e-16
Identity = 64/208 (30.77%), Postives = 106/208 (50.96%), Query Frame = 3
Query: 147 ISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDAS-----AGEFSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSL-----TPFLAAAPLCLFSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHVFSFLLL 740
+ +CG ++ FYQPYF+V+T ++++RL +A P +K S + + D YGP W+SATLIF ++ +N + + + +FS V+TS V YL LW+ + VPL S + +YGYS+ T F+ AP W +A + L F+L + W + E++P++ LL+ + T H+ +LL
Sbjct: 57 LGLCGCFTLGFYQPYFNVDTVDIQVRLTRALIPFKKDPSF---KDLALTNPDAYGPFWISATLIFCMASCSNIASWLDYEGEDPSKWSYDFSYVATSMTMVGIYLLALPFALWSVGKYISVPLPLSFLVCLYGYSMVIFIPTMFVCTAPSDAADWVMMLFAMAWSLL----FLLSNMWGYIAEYLPKEKLLPLLSFIGTTHLIWVVLL 257
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
A0A7S0SX75_9STRA (Protein YIPF (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX75_9STRA)
HSP 1 Score: 88.2 bits (217), Expect = 4.340e-16
Identity = 65/219 (29.68%), Postives = 114/219 (52.05%), Query Frame = 3
Query: 78 PLNGRAAGAVATKA---GRGPPPPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAG-----EFSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLF-----SWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLL 695
PL + AGA + + P + CG LS+ +YQP+FDV+T+++ RL A + R+ ++F++ S + D YGP W+S TL+F ++V ++ R G S AG +F + +++ + + + +W + +D + + VYGYSL F+ A+ LCLF SW L + + L+++F+LRS P ++ + + S LL
Sbjct: 27 PLISKVAGAATQQLLGNNKSTKNPNDMPFCGCLSISYYQPFFDVDTTDIIKRLSLAVFYCRR-ETNFIDI--ISDKPDAYGPFWISTTLVFTLAVTSHIR-GWLSSWMAGTTWVYDFQSIISASSLIYGFASFVPFLVWIILKQYDGNVKLITMICVYGYSLFMFIPASLLCLFPSEVVSWLI----LLVTACLSSLFILRSLGPLIIASVKQDSIMLL 237
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
H3GVJ5_PHYRM (Protein YIPF n=25 Tax=Phytophthora TaxID=4783 RepID=H3GVJ5_PHYRM)
HSP 1 Score: 88.6 bits (218), Expect = 4.760e-16
Identity = 65/217 (29.95%), Postives = 110/217 (50.69%), Query Frame = 3
Query: 99 GAVATKAGRGPPPPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGEFS---EVSTSAYCVLAYLAVGSAGL-WAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCL-----FSWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
G+ + G P + + +CG S+ FYQPYFDV+TS+V+ RL++A P +K +F E + + D YGP W+S TLIF ++ +N + + + E+S SAY ++ +G L W + VP++ + +YGYS F+ AA LC+ W + MA + F+L + W + EH+ ++ +LA ++ H+
Sbjct: 46 GSKSAAYGEDGKPARPMGLCGCFSLAFYQPYFDVDTSDVQQRLMRALVPFKK-DPTFAEL--ALKAPDAYGPFWLSTTLIFCLASCSNVASYLDYEGNTDEWSYDFSRLASAYTLVEIFLMGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCISPLDGMDWVV----MLMAMAWSLFFLLNNLWHVISEHLTKEKMLPVLAVISGAHM 255
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
A0A662XNT8_9STRA (Protein YIPF n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNT8_9STRA)
HSP 1 Score: 87.4 bits (215), Expect = 7.010e-16
Identity = 65/200 (32.50%), Postives = 111/200 (55.50%), Query Frame = 3
Query: 147 ISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGM--TSDAS--AGEFSEVSTSAYCVLAYLAVGSAGL-WAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLFSWPFRSSG---LAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
+ MCG L++ +Y+PYFDV+T++V++RL++A P +K SF E +S D YGP W+S TLIF ++ +N + T D S + +FS ++ SAY ++ +G L W + VP++ + +YGYS+ F+ AA LC + P + L +A + F+L + W + EH+ ++ +LA + H+
Sbjct: 26 MGMCGCLTLAYYKPYFDVDTTDVQLRLMRALVPFKK-EPSFAELAMASP--DAYGPFWLSTTLIFCLASCSNVASFLDYTGDTSEWSYDFSRLA-SAYTLVEIFLLGLPVLIWLVGKYFQVPMTLLFLVCLYGYSMMMFIPAAILC--TIPIDAMDWVVLLLAMTWSLFFLLSNLWSVISEHLTKEKMLPVLAVIRYAHL 219
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Match:
A0A3F2RX72_9STRA (Protein YIPF n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RX72_9STRA)
HSP 1 Score: 86.7 bits (213), Expect = 2.220e-15
Identity = 58/205 (28.29%), Postives = 107/205 (52.20%), Query Frame = 3
Query: 135 PPQKISMCGLLSVQFYQPYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATLIFLISVAANARRGMTSDASAGE----FSEVSTSAYCVLAYLAVGSAGLWAFFRAHDVPLSSSEALSVYGYSLTPFLAAAPLCLF-----SWPFRSSGLAMASLLAAIFVLRSSWPRLVEHMPEKSKGLLLAAVATYHV 722
P + + +CG ++ +YQP FDV+T++V++RL++A P +K +F E + + D YGP W+S TLIF ++ +NA + + E FS ++++ V +L +W + VP++ + +YGYS+ F+ AA C+F W L +A + F+L + W + EH+ ++ +LA ++ H+
Sbjct: 59 PQRPMGLCGCFTLAYYQPLFDVDTTDVQLRLMRALVPFKK-EPTFAEL--ALKAPDAYGPFWLSTTLIFCLASCSNAASFLDYEGDMNEWSYDFSRLASACTLVEIFLLGLPTLIWLVGKYFQVPMTLLFLVCLYGYSMIMFIPAAIFCVFPADAVDWVV----LLLAMSWSLFFLLNNLWSVIAEHLTKEKMLPVLAVISASHM 256
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13515.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 2.27e-102 / Id = 71.60 Expect = 2.63e-18 / Id = 34.42 Expect = 2.87e-18 / Id = 32.38 Expect = 1.30e-17 / Id = 32.49 Expect = 1.81e-16 / Id = 30.73 Expect = 2.41e-16 / Id = 30.77 Expect = 4.34e-16 / Id = 29.68 Expect = 4.76e-16 / Id = 29.95 Expect = 7.01e-16 / Id = 32.50 Expect = 2.22e-15 / Id = 28.29 Sequence A0A6H5L8T9_9PHAE M4B6U3_HYAAE A0A8J2SR10_9STRA A0A8K1CS43_PYTOL A0A0P1A6N6_PLAHL A0A1V9ZA87_9STRA A0A7S0SX75_9STRA H3GVJ5_PHYRM A0A662XNT8_9STRA A0A3F2RX72_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 322.0
Seed ortholog evalue 2.3e-85
Seed eggNOG ortholog 2880.D7FQK8
Preferred name YIPF3
KEGG ko ko:K00688,ko:K15149
KEGG Reaction R02111
KEGG Pathway ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
Hectar predicted targeting category other localisation
GOs GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708
EggNOG free text desc. Rab GTPase binding
EggNOG OGs KOG3114@1,KOG3114@2759
EC 2.4.1.1
COG Functional cat. S
CAZy GT35
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko01000,ko03021
Ec32 ortholog description Yip1 domain
Ec32 ortholog Ec-01_009070.1
Exons 4
Model size 1490
Cds size 717
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816554.5763013-UTR-L-elsbetiae_contig534:24438..24473 1622816554.5763013-UTR-L-elsbetiae_contig534:24438..24473 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig534 24439..24473 +
1691683643.74124-UTR-L-elsbetiae_contig534:24438..24473 1691683643.74124-UTR-L-elsbetiae_contig534:24438..24473 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig534 24439..24473 +
1622816554.6363974-UTR-L-elsbetiae_contig534:26479..27217 1622816554.6363974-UTR-L-elsbetiae_contig534:26479..27217 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig534 26480..27217 +
1691683643.827979-UTR-L-elsbetiae_contig534:26479..27217 1691683643.827979-UTR-L-elsbetiae_contig534:26479..27217 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig534 26480..27217 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816554.5885835-CDS-L-elsbetiae_contig534:24473..24507 1622816554.5885835-CDS-L-elsbetiae_contig534:24473..24507 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig534 24474..24507 +
1691683643.7690835-CDS-L-elsbetiae_contig534:24473..24507 1691683643.7690835-CDS-L-elsbetiae_contig534:24473..24507 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig534 24474..24507 +
1622816554.6001036-CDS-L-elsbetiae_contig534:24789..25040 1622816554.6001036-CDS-L-elsbetiae_contig534:24789..25040 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig534 24790..25040 +
1691683643.7816405-CDS-L-elsbetiae_contig534:24789..25040 1691683643.7816405-CDS-L-elsbetiae_contig534:24789..25040 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig534 24790..25040 +
1622816554.611366-CDS-L-elsbetiae_contig534:25631..25823 1622816554.611366-CDS-L-elsbetiae_contig534:25631..25823 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig534 25632..25823 +
1691683643.794592-CDS-L-elsbetiae_contig534:25631..25823 1691683643.794592-CDS-L-elsbetiae_contig534:25631..25823 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig534 25632..25823 +
1622816554.6217225-CDS-L-elsbetiae_contig534:26239..26479 1622816554.6217225-CDS-L-elsbetiae_contig534:26239..26479 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig534 26240..26479 +
1691683643.8154922-CDS-L-elsbetiae_contig534:26239..26479 1691683643.8154922-CDS-L-elsbetiae_contig534:26239..26479 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig534 26240..26479 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig534.13515.1
>prot_L-elsbetiae_contig534.13515.1 ID=prot_L-elsbetiae_contig534.13515.1|Name=mRNA_L-elsbetiae_contig534.13515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
MMATEEAGWDEGEEPLNGRAAGAVATKAGRGPPPPQKISMCGLLSVQFYQ PYFDVNTSEVKMRLLQAAWPVRKTSSSFLEEGESSQQADLYGPVWVSATL IFLISVAANARRGMTSDASAGEFSEVSTSAYCVLAYLAVGSAGLWAFFRA HDVPLSSSEALSVYGYSLTPFLAAAPLCLFSWPFRSSGLAMASLLAAIFV LRSSWPRLVEHMPEKSKGLLLAAVATYHVFSFLLLTVV* back to top mRNA from alignment at L-elsbetiae_contig534:24439..27217+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig534.13515.1 ID=mRNA_L-elsbetiae_contig534.13515.1|Name=mRNA_L-elsbetiae_contig534.13515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2779bp|location=Sequence derived from alignment at L-elsbetiae_contig534:24439..27217+ (Laminarionema elsbetiae ELsaHSoW15)GGCTCAGGCATCTGGTAGGCACGACTGAAAGCAAG ATGATGGCCACAGAG
GAAGCAGGCTGGGATGAAG GTGCGTTGTACGAGAGTGAGCCTGCATCTCT
GCGTTTAATACAGCAGTAGACTGATCTGTGTAGCAAAAAATAGGAACCTT
TCTCGTTCCGTGCGGGGAGACGATGAACTCTGTCACTCGGCAGGAGATAT
ATACACTTTCCCAACCCCCGCCTCCCTCTCTATCCCCAACACCCGAACCG
GACCGCGTCGCGCTCATCGCCCGGTTCGCACTGTGCTGTGGTTTGCATAA
ACGCCGGTTTTTGTCGCGATTTGTTTCTCCAACATCGCGATACATACACA
GGAGAGGAACCGTTGAACGGCCGGGCCGCAGGGGCAGTCGCGACGAAGGC
AGGCAGAGGTCCCCCACCGCCTCAAAAGATAAGCATGTGCGGTCTTCTCT
CCGTGCAGTTTTACCAGCCCTACTTCGATGTCAACACGAGCGAAGTGAAA
ATGAGGCTGTTGCAGGCCGCATGGCCGGTACGCAAGACGAGTTCGAGCTT
CCTTGAAGAGGGGGAGAGCTCACAACAGGCCGACCTCTACGGGCCGGTTT
GG GTGAGCAATCACAGATCGAGTTTCCACAGCATCCGGTACCGGAAGTAA
TGGAAGCGCGTGCCAAGCAGTCGATACCTCTCTGCCGCTGCAGCTTGTTG
CCTCGCTGGTTTGCCTGCTCTTGTGTGTTGTGTGTGCGTGTGTGTGTTGT
GTGTCCCTATATGTGATTCCCAGCTACCACTCCACATGCCACGCGGGGGA
AGGCTATAGTAATGGTCACCAACAGAAGGTTAGGTTACATACCTACCGAC
CGGGTGTGCCATCTCGCTCCCCCCATCCACATTGGTCTAAATCGATCGGT
GCAACTGGGCGCATAGAGTAGTAGAACACTCACACCCACAACAGTAGACT
ACGCTCACACCCACGGCTCTACCGCCAAATTGGAGCAAGGAATGAACGGT
ATACTGTAAGTACATACAAATTGTCCATTCATAAAAGCCCTTGCGGCAGA
GAGGCTTTCTTGCCCCATTGGTTATGCCAGGGCTACCCGCACCACATCGC
GCAATCACCTTGTTCTCCGTTTTGAACCCCCTCCCTCAACAGCAGTTCTA
CCACGACTTGGTATTGACTCAATTTGACCTTTGGCGTATGCAGGTCTCTG
CGACCCTGATCTTTTTGATTTCCGTGGCGGCCAACGCGCGGCGAGGGATG
ACGAGTGATGCCTCCGCTGGGGAGTTCAGTGAGGTTTCCACGAGCGCGTA
TTGTGTGCTTGCCTACCTCGCCGTCGGATCTGCCGGGCTTTGGGCATTCT
TCAGGGCACACGATGTGCCATTGTCCTCTTCTGAG GTATGGCGCCTTCCG
TGTATGATGCTGAGCCAACACGGTTGTTTTTCGTGTCTGCGGTGGCGTGC
ATAGACCATCCGTTCGCGCGAAGCACTTCTATCCCACACGGCGGTCGCTT
CTGCTGAGCTCAACGAGAACCTGCCATAGGGGTGTCTCTTTTATTCGTGC
GTCCCACAGCAATACTCGTACAGCAGTAGTTGGAGCATAACCGGAAACCG
CGCTCTGACTTATGATCCTTTCTTCCTTCCTCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTGGCCGTCCCCCTCTGTC
CCCCCTCCNNNNNNNNNNAAAATCCGAAACACCCCTTGAATATATACTCC
TTTTTTTCTCCCCCCCCCCCCCCCCCCCCCCCCCGGCTTGCCTGCTGGTA
GGCCCTGAGTGTTTACGGTTACTCACTCACCCCGTTCCTGGCGGCGGCGC
CGCTCTGCCTGTTCTCATGGCCGTTCCGATCGTCCGGCCTTGCAATGGCG
AGTCTCTTGGCGGCGATCTTCGTGCTCCGGAGTTCGTGGCCCAGGCTGGT
GGAGCACATGCCGGAGAAGTCGAAGGGGCTGCTCCTTGCTGCGGTTGCAA
CATACCACGTGTTTTCGTTCCTTCTGCTCACGGTTGTTTAG AGGAAGGCG
GCGCGACAATTTGCTCCTGTTGGGTTGGTTCTGTACGCGTACCTACATTT
TGCGTTTTTCTAATCGTTTTCATCTTTTTAGGTTTGTAGTGTTTTGCTTT
GTTTTTTGCGCTGCGTTGCATTATGTAGCGTAGCTGGGGGGTTGGTTGTG
CATGAATTGACGTTGAGCTAGGATGATAAATTCATTGTTAACGAAGAGAC
GGCTCTTCTGAAGAGTGCACAACCTGTGTTCGATGTTGTCCAGTCCATTG
TTCCCAGGTCTTGGTTACAAGGACGTTGCAGGCAGCAGACCCCCGCCGTT
CGTATACTCCTACTTCCGTCTGTATATAAGTACGACGATATGTAGGCCTG
CCGTAAATCTCACACGTGGTACTTATTGACTCTTTTGAAAACAAGAGTTC
TCGCTTAGCCTTCCTGGCTCCCAAACAGTTCAGAGGGCTGTGTGGCGCGC
CCCACCGCGCTCGTAGCACACCGTCCGGTTTGTTGGGAATACGCGAAGCA
TGACCAAGATAGTGTGAAGGTAGTGCGCAGAACTCTTCTGCCCGGGAGTA
GCAGACCTCTGGGATATGGGTTTCCCGTGTGACATAGGGCGTGTTTGTGT
GGATCCCGTTGGTGACTTGTGACTTGAGGCCGACTCTCACTCTCTCCCTC
TCTCTCCTGAGATCCTCCTCCCCCTTACCCCTCGGGCGCTCCTCACGGGA
GCGCACCGGGAGAATAATACAAGCGATCT back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig534:24439..27217+
>mRNA_L-elsbetiae_contig534.13515.1 ID=mRNA_L-elsbetiae_contig534.13515.1|Name=mRNA_L-elsbetiae_contig534.13515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig534:24439..27217+ (Laminarionema elsbetiae ELsaHSoW15) ATGATGGCCACAGAGGAAGCAGGCTGGGATGAAGATGATGGCCACAGAGG AAGCAGGCTGGGATGAAGGAGAGGAACCGTTGAACGGCCGGGCCGCAGGG GCAGTCGCGACGAAGGCAGGCAGAGGTCCCCCACCGCCTCAAAAGATAAG CATGTGCGGTCTTCTCTCCGTGCAGTTTTACCAGCCCTACTTCGATGTCA ACACGAGCGAAGTGAAAATGAGGCTGTTGCAGGCCGCATGGCCGGTACGC AAGACGAGTTCGAGCTTCCTTGAAGAGGGGGAGAGCTCACAACAGGCCGA CCTCTACGGGCCGGTTTGGGAGAGGAACCGTTGAACGGCCGGGCCGCAGG GGCAGTCGCGACGAAGGCAGGCAGAGGTCCCCCACCGCCTCAAAAGATAA GCATGTGCGGTCTTCTCTCCGTGCAGTTTTACCAGCCCTACTTCGATGTC AACACGAGCGAAGTGAAAATGAGGCTGTTGCAGGCCGCATGGCCGGTACG CAAGACGAGTTCGAGCTTCCTTGAAGAGGGGGAGAGCTCACAACAGGCCG ACCTCTACGGGCCGGTTTGGGTCTCTGCGACCCTGATCTTTTTGATTTCC GTGGCGGCCAACGCGCGGCGAGGGATGACGAGTGATGCCTCCGCTGGGGA GTTCAGTGAGGTTTCCACGAGCGCGTATTGTGTGCTTGCCTACCTCGCCG TCGGATCTGCCGGGCTTTGGGCATTCTTCAGGGCACACGATGTGCCATTG TCCTCTTCTGAGGTCTCTGCGACCCTGATCTTTTTGATTTCCGTGGCGGC CAACGCGCGGCGAGGGATGACGAGTGATGCCTCCGCTGGGGAGTTCAGTG AGGTTTCCACGAGCGCGTATTGTGTGCTTGCCTACCTCGCCGTCGGATCT GCCGGGCTTTGGGCATTCTTCAGGGCACACGATGTGCCATTGTCCTCTTC TGAGGCCCTGAGTGTTTACGGTTACTCACTCACCCCGTTCCTGGCGGCGG CGCCGCTCTGCCTGTTCTCATGGCCGTTCCGATCGTCCGGCCTTGCAATG GCGAGTCTCTTGGCGGCGATCTTCGTGCTCCGGAGTTCGTGGCCCAGGCT GGTGGAGCACATGCCGGAGAAGTCGAAGGGGCTGCTCCTTGCTGCGGTTG CAACATACCACGTGTTTTCGTTCCTTCTGCTCACGGTTGTTTAGGCCCTG AGTGTTTACGGTTACTCACTCACCCCGTTCCTGGCGGCGGCGCCGCTCTG CCTGTTCTCATGGCCGTTCCGATCGTCCGGCCTTGCAATGGCGAGTCTCT TGGCGGCGATCTTCGTGCTCCGGAGTTCGTGGCCCAGGCTGGTGGAGCAC ATGCCGGAGAAGTCGAAGGGGCTGCTCCTTGCTGCGGTTGCAACATACCA CGTGTTTTCGTTCCTTCTGCTCACGGTTGTTTAG back to top